Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2026 Acer truncatum HOM05D001676 ORTHO05D001539 0.0e+00 1161.7 643 100.0
Ciclev10004168m.g Citrus clementina HOM05D001676 ORTHO05D001539 1.4e-196 690.3 822 53.3
QL06p018506 Quercus lobata HOM05D001676 ORTHO05D001539 2.6e-169 599.7 818 48.8
Dinv29846 Davidia involucrata HOM05D001676 ORTHO05D001539 1.0e-165 587.8 821 48.0
CiPaw.02G110700 Carya illinoinensis HOM05D001676 ORTHO05D001539 1.6e-163 580.5 816 47.3
TWI09G0719 Tripterygium wilfordii HOM05D001676 ORTHO05D001539 1.6e-163 580.5 826 47.3
Thecc.04G257700 Theobroma cacao HOM05D001676 ORTHO05D001539 4.7e-163 578.9 820 47.1
Prupe.1G041100 Prunus persica HOM05D001676 ORTHO05D001539 1.4e-162 577.4 817 48.2
Duzib151G0984 Durio zibethinus HOM05D001676 ORTHO05D001539 8.8e-162 574.7 817 46.8
Manes.03G163000 Manihot esculenta HOM05D001676 ORTHO05D001539 1.5e-161 573.9 827 47.6
Cfa014719 Carpinus fangiana HOM05D001676 ORTHO05D001539 1.4e-159 567.4 818 47.4
Potri.010G070200 Populus trichocarpa HOM05D001676 ORTHO05D001539 1.4e-159 567.4 822 46.7
Duzib212G0588 Durio zibethinus HOM05D001676 ORTHO05D001539 1.9e-156 557.0 824 46.5
Potri.008G168300 Populus trichocarpa HOM05D001676 ORTHO05D001539 3.3e-156 556.2 821 47.7
Sabra10G0037100 Salix brachista HOM05D001676 ORTHO05D001539 8.9e-154 548.1 822 46.0
MD13G1215700 Malus domestica HOM05D001676 ORTHO05D001539 5.7e-153 545.4 807 45.4
Duzib052G0282 Durio zibethinus HOM05D001676 ORTHO05D001539 2.9e-152 543.1 822 45.7
RcHm_v2.0_Chr4g0393911 Rosa chinensis HOM05D001676 ORTHO05D001539 8.3e-152 541.6 812 45.8
Dinv27064 Davidia involucrata HOM05D001676 ORTHO05D001539 1.4e-151 540.8 810 45.3
MD16G1220700 Malus domestica HOM05D001676 ORTHO05D001539 8.6e-149 531.6 807 45.0
Cpa.g.sc380.6 Carica papaya HOM05D001676 ORTHO05D001539 1.0e-146 524.6 826 46.1
Gohir.D09G230200 Gossypium hirsutum HOM05D001676 ORTHO05D001539 1.8e-146 523.9 814 45.7
COL.COLO4_15893 Corchorus olitorius HOM05D001676 ORTHO05D001539 1.2e-145 521.2 754 46.0
Haze_11401 Corylus avellana HOM05D001676 ORTHO05D001539 2.0e-145 520.4 762 46.5
FAN12G4001 Fragaria x ananassa HOM05D001676 ORTHO05D001539 2.6e-145 520.0 813 45.5
Gorai.006G252900 Gossypium raimondii HOM05D001676 ORTHO05D001539 3.4e-145 519.6 814 45.5
GSVIVG01027840001 Vitis vinifera HOM05D001676 ORTHO05D001539 1.3e-144 517.7 794 45.7
FAN17G1280 Fragaria x ananassa HOM05D001676 ORTHO05D001539 6.4e-144 515.4 806 45.4
CSS0046642 Camellia sinensis var. sinensis HOM05D001676 ORTHO05D001539 8.3e-144 515.0 822 44.4
CANSAT78G2335 Cannabis sativa HOM05D001676 ORTHO05D001539 1.1e-140 504.6 787 46.3
FvH4_4g03880 Fragaria vesca HOM05D001676 ORTHO05D001539 1.2e-137 494.6 759 45.6
FAN22G0824 Fragaria x ananassa HOM05D001676 ORTHO05D001539 2.0e-137 493.8 866 42.5
TAR633G1347 Trochodendron aralioides HOM05D001676 ORTHO05D001539 7.1e-135 485.3 829 42.2
Sabra08G0128300 Salix brachista HOM05D001676 ORTHO05D001539 1.1e-132 478.0 764 44.4
TAR362G0282 Trochodendron aralioides HOM05D001676 ORTHO05D001539 5.6e-132 475.7 828 41.7
Actinidia20816 Actinidia chinensis HOM05D001676 ORTHO05D001539 1.1e-130 471.5 819 42.1
Gohir.D02G046100 Gossypium hirsutum HOM05D001676 ORTHO05D001539 3.1e-130 469.9 805 42.0
Gohir.A02G040000 Gossypium hirsutum HOM05D001676 ORTHO05D001539 1.7e-128 464.2 811 41.8
Glyma.10G182300 Glycine max HOM05D001676 ORTHO05D001539 2.9e-128 463.4 817 41.2
Actinidia35795 Actinidia chinensis HOM05D001676 ORTHO05D001539 1.4e-127 461.1 814 41.2
Gohir.A09G229166 Gossypium hirsutum HOM05D001676 ORTHO05D001539 7.1e-127 458.8 791 42.9
Lalb_Chr02g0150231 Lupinus albus HOM05D001676 ORTHO05D001539 1.6e-126 457.6 812 40.9
arahy.Tifrunner.gnm1.ann1.7F0WTK Arachis hypogaea HOM05D001676 ORTHO05D001539 7.8e-126 455.3 800 41.4
Ca_09855_v3 Cicer arietinum L. HOM05D001676 ORTHO05D001539 2.1e-123 447.2 807 41.5
VMungo0720G1476 Vigna mungo HOM05D001676 ORTHO05D001539 2.4e-122 443.7 819 39.2
Psat6g117680 Pisum sativum HOM05D001676 ORTHO05D001539 3.4e-121 439.9 795 42.1
Rhsim04G0177100 Rhododendron simsii HOM05D001676 ORTHO05D001539 4.9e-120 436.0 844 39.8
vmacro08509 Vaccinium macrocarpon HOM05D001676 ORTHO05D001539 1.4e-119 434.5 823 40.2
Medtr1g075740 Medicago truncatula HOM05D001676 ORTHO05D001539 2.4e-119 433.7 787 42.2
Lj5g0006991 Lotus japonicus HOM05D001676 ORTHO05D001539 3.0e-117 426.8 818 40.0
Lj6C633G10 Lonicera japonica HOM05D001676 ORTHO05D001539 5.1e-117 426.0 739 42.4
Nn1g02892 Nelumbo nucifera HOM05D001676 ORTHO05D001539 1.1e-116 424.9 833 39.7
Gorai.005G050900 Gossypium raimondii HOM05D001676 ORTHO05D001539 3.3e-116 423.3 746 41.3
Lj6g0007164 Lotus japonicus HOM05D001676 ORTHO05D001539 5.6e-116 422.5 789 40.2
Glyma.20G207700 Glycine max HOM05D001676 ORTHO05D001539 7.3e-116 422.2 753 40.0
Eucgr.H00149 Eucalyptus grandis HOM05D001676 ORTHO05D001539 4.8e-115 419.5 812 38.8
Phvul.010G067273 Phaseolus vulgaris HOM05D001676 ORTHO05D001539 6.2e-115 419.1 813 39.4
CiPaw.01G182500 Carya illinoinensis HOM05D001676 ORTHO05D001539 1.1e-114 418.3 673 45.2
Sed0015305 Sechium edule HOM05D001676 ORTHO05D001539 1.1e-114 418.3 825 38.7
PGR004G1623 Punica granatum HOM05D001676 ORTHO05D001539 5.8e-113 412.5 806 40.9
Glyma.02G004200 Glycine max HOM05D001676 ORTHO05D001539 9.9e-113 411.8 785 40.3
CSS0010928 Camellia sinensis var. sinensis HOM05D001676 ORTHO05D001539 4.9e-112 409.5 875 39.2
Glyma.10G004100 Glycine max HOM05D001676 ORTHO05D001539 1.6e-110 404.4 788 39.6
Sed0010483 Sechium edule HOM05D001676 ORTHO05D001539 3.5e-110 403.3 820 38.2
Oeu028209.2 Olea europaea HOM05D001676 ORTHO05D001539 6.0e-110 402.5 834 37.8
Cc03_g05670 Coffea canephora HOM05D001676 ORTHO05D001539 2.3e-109 400.6 814 38.6
MELO3C023009.2 Cucumis melo HOM05D001676 ORTHO05D001539 1.5e-108 397.9 813 39.6
MBI07_g31098_MAGBIO Magnolia biondii HOM05D001676 ORTHO05D001539 3.1e-106 390.2 832 38.0
Nitab4.5_0000778g0070 Nicotiana tabacum HOM05D001676 ORTHO05D001539 7.6e-105 385.6 789 38.9
ClCG06G007080 Citrullus lanatus HOM05D001676 ORTHO05D001539 9.9e-105 385.2 845 36.0
CAN.G220.6 Capsicum annuum HOM05D001676 ORTHO05D001539 1.1e-103 381.7 810 38.6
Aqoxy5G00197 Aquilegia oxysepala HOM05D001676 ORTHO05D001539 7.9e-102 375.6 817 37.1
Peaxi162Scf00041g02416 Petunia axillaris HOM05D001676 ORTHO05D001539 3.0e-101 373.6 809 38.7
Solyc09g090270.3 Solanum lycopersicum HOM05D001676 ORTHO05D001539 1.1e-100 371.7 811 37.7
Oeu005088.4 Olea europaea HOM05D001676 ORTHO05D001539 1.3e-99 368.2 775 36.0
SalBow3G4141 Salvia bowleyana HOM05D001676 ORTHO05D001539 4.8e-99 366.3 803 36.1
Lalb_Chr06g0169151 Lupinus albus HOM05D001676 ORTHO05D001539 6.2e-99 365.9 898 34.1
PGSC0003DMG400017216 Solanum tuberosum HOM05D001676 ORTHO05D001539 6.2e-99 365.9 811 37.4
Nitab4.5_0000044g0420 Nicotiana tabacum HOM05D001676 ORTHO05D001539 2.4e-98 364.0 750 38.5
Sopen09g033170 Solanum pennellii HOM05D001676 ORTHO05D001539 1.5e-97 361.3 811 37.7
PSO832G0756 Papaver somniferum HOM05D001676 ORTHO05D001539 3.2e-95 353.6 821 34.8
PSO210G1446 Papaver somniferum HOM05D001676 ORTHO05D001539 7.1e-95 352.4 822 34.9
MSTRG.24670 Avicennia marina HOM05D001676 ORTHO05D001539 2.1e-94 350.9 795 35.6
arahy.Tifrunner.gnm1.ann1.JB2S8U Arachis hypogaea HOM05D001676 ORTHO05D001539 1.1e-92 345.1 872 34.3
Phvul.007G277200 Phaseolus vulgaris HOM05D001676 ORTHO05D001539 1.4e-90 338.2 789 37.4
AT5G43310 Arabidopsis thaliana HOM05D001676 ORTHO05D001539 1.8e-90 337.8 785 36.6
Manes.15G042200 Manihot esculenta HOM05D001676 ORTHO05D001539 8.4e-88 328.9 553 42.0
arahy.Tifrunner.gnm1.ann1.MJS5SD Arachis hypogaea HOM05D001676 ORTHO05D001539 2.5e-87 327.4 870 33.6
C07p25900 Brassica napus HOM05D001676 ORTHO05D001539 3.2e-87 327.0 776 38.3
Ca_12150_v3 Cicer arietinum L. HOM05D001676 ORTHO05D001539 5.5e-87 326.2 646 38.9
VMungo0720G2815 Vigna mungo HOM05D001676 ORTHO05D001539 5.5e-87 326.2 714 37.7
MSTRG.21919 Avicennia marina HOM05D001676 ORTHO05D001539 7.2e-87 325.9 810 36.5
Migut.N00283 Erythranthe guttata HOM05D001676 ORTHO05D001539 9.3e-87 325.5 784 35.5
Medtr1g041465 Medicago truncatula HOM05D001676 ORTHO05D001539 9.3e-87 325.5 801 35.3
AL8G17080 Arabidopsis lyrata HOM05D001676 ORTHO05D001539 3.5e-86 323.6 786 36.1
THA.LOC104801554 Tarenaya hassleriana HOM05D001676 ORTHO05D001539 5.1e-85 319.7 818 36.4
Carub.0008s0535 Capsella rubella HOM05D001676 ORTHO05D001539 5.7e-84 316.2 782 35.9
TPR.G25163 Trifolium pratense HOM05D001676 ORTHO05D001539 9.7e-84 315.5 784 35.5
A06p47920 Brassica napus HOM05D001676 ORTHO05D001539 2.2e-83 314.3 777 37.5
BraA06t27662Z Brassica rapa HOM05D001676 ORTHO05D001539 2.2e-83 314.3 777 37.5
MBI10_g13802_MAGBIO Magnolia biondii HOM05D001676 ORTHO05D001539 1.8e-82 311.2 834 35.3
Hund11899 Selenicereus undatus HOM05D001676 ORTHO05D001539 9.0e-82 308.9 817 33.7
Sp2g08120 Schrenkiella parvula HOM05D001676 ORTHO05D001539 2.6e-81 307.4 789 36.4
DCAR_002314 Daucus carota HOM05D001676 ORTHO05D001539 4.5e-81 306.6 751 36.6
TPR.G10081 Trifolium pratense HOM05D001676 ORTHO05D001539 7.7e-81 305.8 663 37.7
BcaC06g31710 Brassica carinata HOM05D001676 ORTHO05D001539 1.3e-80 305.1 780 36.9
CsaV3_2G012670 Cucumis sativus L. HOM05D001676 ORTHO05D001539 3.8e-80 303.5 582 38.1
BcaC06g34663 Brassica carinata HOM05D001676 ORTHO05D001539 1.1e-79 302.0 776 37.1
BolC7t43111H Brassica oleracea HOM05D001676 ORTHO05D001539 1.1e-79 302.0 776 37.1
CARHR180420 Cardamine hirsuta HOM05D001676 ORTHO05D001539 1.0e-77 295.4 780 35.5
SGA_v2.0_scaffold43G16224 Striga asiatica HOM05D001676 ORTHO05D001539 1.0e-77 295.4 797 33.4
Migut.G00505 Erythranthe guttata HOM05D001676 ORTHO05D001539 2.8e-75 287.3 756 34.7
Lsat_1_v5_gn_5_73160 Lactuca sativa HOM05D001676 ORTHO05D001539 3.1e-74 283.9 738 36.0
AUR62002154 Chenopodium quinoa HOM05D001676 ORTHO05D001539 8.5e-72 275.8 826 32.1
AUR62015553 Chenopodium quinoa HOM05D001676 ORTHO05D001539 5.5e-71 273.1 822 32.1
ECA233G1832 Erigeron canadensis HOM05D001676 ORTHO05D001539 1.2e-70 271.9 755 35.2
A02p27760 Brassica napus HOM05D001676 ORTHO05D001539 2.1e-70 271.2 844 34.1
BraA02t07817Z Brassica rapa HOM05D001676 ORTHO05D001539 2.1e-70 271.2 844 34.1
EL10Ac3g04990 Beta vulgaris HOM05D001676 ORTHO05D001539 1.0e-69 268.9 813 32.7
BolC2t10432H Brassica oleracea HOM05D001676 ORTHO05D001539 2.3e-69 267.7 841 34.0
ATR0736G045 Amborella trichopoda HOM05D001676 ORTHO05D001539 8.8e-69 265.8 829 32.3
Lj3C691T9 Lonicera japonica HOM05D001676 ORTHO05D001539 2.6e-65 254.2 859 31.8
Psat6g244160 Pisum sativum HOM05D001676 ORTHO05D001539 8.5e-64 249.2 715 33.3
BcaC03g16572 Brassica carinata HOM05D000411 ORTHO05D001539 1.6e-62 245.0 806 32.9
Aa31LG5G3810 Aethionema arabicum HOM05D001676 ORTHO05D001539 2.4e-58 231.1 731 33.5
BcaB07g30585 Brassica carinata HOM05D001676 ORTHO05D001539 4.1e-58 230.3 831 32.7
Sc13g0005790 Simmondsia chinensis HOM05D001676 ORTHO05D001539 9.1e-58 229.2 842 29.7
Thhalv10003134m.g Eutrema salsugineum HOM05D001676 ORTHO05D001539 4.2e-55 220.3 574 35.4
Os03g0861100 Oryza sativa ssp. japonica HOM05D001676 ORTHO05D001539 6.8e-53 213.0 793 30.3
Lj3A690G34 Lonicera japonica HOM05D001676 ORTHO05D001539 3.8e-48 197.2 611 33.2
unitig_0.g2241 Utricularia gibba HOM05D001676 ORTHO05D001539 1.2e-46 192.2 774 29.1
Zm00001eb065300 Zea mays HOM05D001676 ORTHO05D001539 5.7e-44 183.3 783 29.6
Sc25g0003680 Simmondsia chinensis HOM05D001676 ORTHO05D001539 9.8e-44 182.6 564 33.3
TPR.G18488 Trifolium pratense HOM05D001676 ORTHO05D001539 9.2e-42 176.0 177 58.8
C02p54960 Brassica napus HOM05D001676 ORTHO05D001539 4.9e-35 153.7 397 39.0
Os07g0445600 Oryza sativa ssp. japonica HOM05D001676 ORTHO05D001539 3.6e-30 137.5 314 35.4
Zm00001eb306260 Zea mays HOM05D001676 ORTHO05D001539 4.7e-30 137.1 399 31.1
HanXRQChr17g0565931 Helianthus annuus HOM05D001676 ORTHO05D001539 1.0e-29 136.0 714 29.6
Aqoxy2G03699 Aquilegia oxysepala HOM05D001676 ORTHO05D001539 1.2e-28 132.5 417 32.4
HPP92_008598 Vanilla planifolia HOM05D001676 ORTHO05D001539 1.1e-21 109.4 662 28.5
CDE05G0956 Ceratophyllum demersum HOM05D001676 ORTHO05D001539 1.2e-20 105.9 616 26.9
RhsimUnG0080800 Rhododendron simsii HOM05D001676 ORTHO05D001539 2.0e-20 105.1 175 42.3
PGSC0003DMG400005037 Solanum tuberosum HOM05D001676 ORTHO05D001539 2.6e-20 104.8 137 46.0
Rhsim07G0183600 Rhododendron simsii HOM05D001982 ORTHO05D001539 1.7e-19 102.1 172 40.7
CDE07G1795 Ceratophyllum demersum HOM05D001676 ORTHO05D001539 1.1e-18 99.4 414 28.5
CDE04G2803 Ceratophyllum demersum HOM05D001676 ORTHO05D001539 2.4e-18 98.2 482 28.6
SEGI_01268 Sequoiadendron giganteum HOM05D001676 ORTHO05D001539 1.6e-06 58.9 446 24.2


User provided reference genes

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