Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1970 Acer truncatum HOM05D004737 ORTHO05D005623 4.3e-92 341.3 168 100.0
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 3.8e-88 328.2 168 96.4
Atru.chr7.1971 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-46 189.9 174 56.3
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 7.0e-18 94.7 133 42.9
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 1.0e-16 90.9 166 34.9
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 1.3e-16 90.5 166 33.7
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 2.3e-16 89.7 168 32.1
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 2.3e-16 89.7 168 33.3
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 2.9e-16 89.4 168 32.7
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 8.6e-16 87.8 166 32.5
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 1.9e-15 86.7 171 33.3
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 2.5e-15 86.3 167 33.5
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 3.3e-15 85.9 166 31.9
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 7.3e-15 84.7 166 31.3
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 7.3e-15 84.7 167 32.3
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 9.5e-15 84.3 166 31.9
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 1.2e-14 84.0 171 33.9
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 1.2e-14 84.0 166 31.9
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 2.1e-14 83.2 166 31.3
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 2.8e-14 82.8 177 34.5
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 2.8e-14 82.8 166 31.3
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 3.6e-14 82.4 167 32.9
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 4.7e-14 82.0 166 31.3
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 4.7e-14 82.0 134 34.3
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 4.7e-14 82.0 134 34.3
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 4.7e-14 82.0 166 30.1
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 4.7e-14 82.0 167 30.5
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 6.1e-14 81.6 166 31.9
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 1.8e-13 80.1 166 33.1
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 1.8e-13 80.1 168 31.5
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 2.3e-13 79.7 177 28.8
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 2.3e-13 79.7 177 28.8
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 2.3e-13 79.7 166 30.1
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 3.0e-13 79.3 151 37.1
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 3.0e-13 79.3 168 32.7
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 3.0e-13 79.3 135 34.8
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 3.0e-13 79.3 135 34.8
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 3.0e-13 79.3 166 30.7
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 3.0e-13 79.3 166 30.7
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 3.0e-13 79.3 132 35.6
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 4.0e-13 79.0 135 33.3
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 5.2e-13 78.6 167 31.1
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 5.2e-13 78.6 134 35.8
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 6.8e-13 78.2 174 31.6
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 8.9e-13 77.8 134 34.3
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 8.9e-13 77.8 167 30.5
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 1.5e-12 77.0 167 31.7
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 1.5e-12 77.0 166 32.5
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 2.6e-12 76.3 168 31.5
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 4.4e-12 75.5 167 30.5
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 5.7e-12 75.1 134 32.1
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 7.5e-12 74.7 166 29.5
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 7.5e-12 74.7 168 29.8
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 9.8e-12 74.3 132 34.1
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 9.8e-12 74.3 167 31.1
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 9.8e-12 74.3 201 28.9
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 1.3e-11 73.9 166 28.9
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 1.7e-11 73.6 161 31.1
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 2.2e-11 73.2 172 26.7
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 3.7e-11 72.4 159 30.2
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 3.7e-11 72.4 167 28.7
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 3.7e-11 72.4 166 28.3
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 4.9e-11 72.0 168 31.0
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 4.9e-11 72.0 169 30.2
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 6.4e-11 71.6 172 26.7
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 8.3e-11 71.2 130 32.3
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 8.3e-11 71.2 172 26.2
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 1.1e-10 70.9 131 33.6
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 1.1e-10 70.9 177 30.5
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 1.4e-10 70.5 164 30.5
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 1.4e-10 70.5 168 29.8
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-10 70.1 138 29.0
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 3.2e-10 69.3 167 28.7
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 5.4e-10 68.6 167 28.7
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 7.0e-10 68.2 167 28.7
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-09 67.4 117 36.8
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 1.2e-09 67.4 169 29.6
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 5.9e-09 65.1 134 27.6
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 5.9e-09 65.1 113 31.0
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 5.9e-09 65.1 167 28.1
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-08 63.9 132 31.1
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 1.3e-08 63.9 166 30.7
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 1.7e-08 63.5 167 28.1
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 1.7e-08 63.5 177 26.6
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 3.9e-08 62.4 141 29.8
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 1.5e-07 60.5 104 35.6
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 1.9e-07 60.1 134 29.9
Atru.chr4.1966 Acer truncatum HOM05D004737 ORTHO05D052072 1.2e-06 57.4 79 41.8
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 2.8e-06 56.2 166 27.1
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 4.7e-06 55.5 183 25.1
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 6.2e-06 55.1 139 28.8


User provided reference genes

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