Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 1.8e-125 452.6 223 100.0
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 7.2e-111 404.1 221 90.0
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 9.4e-103 377.1 221 85.1
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 2.1e-94 349.4 220 80.9
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 4.4e-92 341.7 217 78.8
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 7.0e-90 334.3 219 77.6
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 1.2e-89 333.6 219 78.5
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 2.7e-89 332.4 217 77.0
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 2.9e-88 328.9 220 77.7
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.9e-87 326.2 221 73.8
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 6.1e-86 321.2 219 76.3
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 8.0e-86 320.9 223 71.3
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.4e-85 320.1 223 73.1
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 1.8e-85 319.7 222 74.3
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 8.8e-85 317.4 220 74.1
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 3.4e-84 315.5 203 79.8
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 4.1e-82 308.5 217 71.4
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 9.1e-82 307.4 219 71.7
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 1.6e-81 306.6 222 70.7
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.6e-81 306.6 217 72.8
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.6e-81 306.6 219 69.9
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 2.7e-81 305.8 216 72.7
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 2.7e-81 305.8 209 72.7
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 4.5e-81 305.1 221 73.8
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 7.7e-81 304.3 221 71.0
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 7.7e-81 304.3 220 71.4
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 3.8e-80 302.0 236 66.9
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 5.0e-80 301.6 219 71.2
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 5.0e-80 301.6 219 71.2
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 1.9e-79 299.7 215 71.6
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.5e-79 299.3 219 70.8
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 4.2e-79 298.5 227 67.8
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 4.2e-79 298.5 215 71.6
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 7.2e-79 297.7 222 72.1
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 7.2e-79 297.7 215 72.1
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 9.4e-79 297.4 215 71.6
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 1.2e-78 297.0 219 70.8
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 2.1e-78 296.2 216 72.2
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 2.3e-77 292.7 220 69.1
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 2.3e-77 292.7 217 71.9
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 4.4e-76 288.5 210 71.0
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 4.4e-76 288.5 211 71.6
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 4.4e-76 288.5 220 67.7
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 5.7e-76 288.1 196 76.0
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 5.7e-76 288.1 219 70.3
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 5.7e-76 288.1 218 70.6
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 1.3e-75 287.0 217 71.0
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 1.8e-74 283.1 196 75.0
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 3.1e-74 282.3 219 67.1
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 2.7e-73 279.3 186 76.9
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.9e-73 278.1 216 67.1
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 5.9e-73 278.1 213 70.0
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 7.7e-73 277.7 217 66.4
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 1.0e-72 277.3 208 71.6
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.3e-72 276.9 216 67.1
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 1.7e-72 276.6 220 67.3
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 2.3e-72 276.2 216 66.7
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 5.0e-72 275.0 207 68.6
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 6.6e-72 274.6 217 67.3
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 3.3e-71 272.3 177 78.5
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 9.5e-71 270.8 213 69.0
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.2e-70 270.4 222 65.3
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 2.1e-70 269.6 222 64.9
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.1e-70 269.6 223 66.4
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 2.8e-70 269.2 238 63.9
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 3.6e-70 268.9 224 65.2
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 3.6e-70 268.9 213 66.7
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 6.1e-70 268.1 228 61.4
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.0e-69 267.3 223 65.5
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.0e-69 267.3 221 63.3
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 1.4e-69 266.9 235 63.0
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.8e-69 266.5 201 69.7
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 3.0e-69 265.8 209 69.9
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 4.0e-69 265.4 223 65.9
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 5.2e-69 265.0 221 66.1
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 5.2e-69 265.0 177 77.4
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 6.8e-69 264.6 227 61.7
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 2.0e-68 263.1 223 65.9
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 2.0e-68 263.1 259 59.1
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 4.4e-68 261.9 220 64.5
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 2.2e-67 259.6 227 63.9
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 3.7e-67 258.8 224 61.2
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 6.4e-67 258.1 206 65.5
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 6.4e-67 258.1 206 65.5
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 2.4e-66 256.1 229 61.6
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 3.2e-66 255.8 213 65.7
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 3.2e-66 255.8 213 65.7
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.2e-65 253.8 226 60.6
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 2.7e-65 252.7 177 74.0
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.3e-64 250.4 223 60.5
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.3e-64 249.6 226 62.4
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.5e-63 246.1 208 63.5
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 2.5e-63 246.1 225 60.0
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 3.3e-63 245.7 204 65.2
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 4.3e-63 245.4 235 60.0
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 2.1e-62 243.0 225 59.6
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 2.1e-62 243.0 226 59.3
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 3.6e-62 242.3 202 60.9
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 8.0e-62 241.1 226 60.6
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 1.0e-61 240.7 224 59.4
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 1.0e-61 240.7 224 59.4
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 2.3e-61 239.6 224 58.9
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 2.3e-61 239.6 224 58.9
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 4.0e-61 238.8 208 62.0
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 5.2e-61 238.4 177 72.3
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 7.5e-60 234.6 221 60.6
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 1.3e-59 233.8 220 58.2
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 2.2e-59 233.0 188 63.8
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 3.7e-59 232.3 223 60.5
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 6.4e-59 231.5 221 57.0
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 4.6e-57 225.3 212 59.4
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.7e-56 223.4 223 54.3
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 2.3e-56 223.0 180 60.6
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.9e-55 219.9 194 60.8
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 1.2e-54 217.2 238 50.8
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 2.1e-54 216.5 234 53.8
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 2.8e-54 216.1 235 55.3
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 6.2e-54 214.9 235 54.9
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 8.1e-54 214.5 225 54.2
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 3.1e-53 212.6 239 51.0
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 1.2e-52 210.7 211 56.4
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 2.0e-52 209.9 237 54.0
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 5.8e-52 208.4 177 66.1
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 7.5e-52 208.0 196 59.7
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 1.4e-50 203.8 180 56.1
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 6.0e-49 198.4 172 60.5
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 3.0e-48 196.1 197 57.9
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 4.3e-47 192.2 162 61.1
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 9.5e-47 191.0 141 68.8
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.4e-45 187.2 139 75.5
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 3.1e-45 186.0 196 53.6
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 5.2e-45 185.3 139 75.5
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 2.6e-44 183.0 143 62.2
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 7.6e-44 181.4 226 47.8
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 7.8e-41 171.4 185 51.9
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.3e-40 169.9 177 54.2
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.9e-39 166.8 134 69.4
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 5.6e-39 165.2 200 48.0
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.8e-37 160.2 89 76.4
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 2.2e-35 153.3 164 57.9
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 4.9e-35 152.1 156 60.9
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 1.1e-34 151.0 141 64.5
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.6e-33 147.1 140 67.1
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 4.6e-33 145.6 149 63.1
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 3.0e-32 142.9 133 66.9
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.5e-31 139.8 120 60.0
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 7.3e-31 138.3 165 44.8
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.3e-30 137.5 158 49.4
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 2.8e-30 136.3 76 75.0
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.6e-30 136.0 76 77.6
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 1.1e-26 124.4 239 38.9
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 6.7e-24 115.2 148 53.4
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 5.6e-23 112.1 206 40.8
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 3.6e-22 109.4 67 73.1
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 6.2e-22 108.6 159 39.0
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 6.9e-21 105.1 100 67.0
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 4.5e-20 102.4 103 45.6
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 7.6e-20 101.7 120 40.8
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 2.9e-19 99.8 136 50.7
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 9.3e-18 94.7 96 56.2
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 1.6e-17 94.0 117 52.1
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 8.7e-16 88.2 119 42.9
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 1.1e-15 87.8 111 55.0
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 2.0e-12 77.0 47 68.1
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 8.4e-11 71.6 41 75.6
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 8.4e-11 71.6 48 64.6
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.3e-08 64.3 50 56.0
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 2.3e-08 63.5 90 43.3
arahy.Tifrunner.gnm1.ann1.F7NEFJ Arachis hypogaea HOM05D004084 ORTHO05D004662 3.9e-08 62.8 72 58.3
arahy.Tifrunner.gnm1.ann1.K0L3ZW Arachis hypogaea HOM05D004084 ORTHO05D004662 3.9e-08 62.8 72 58.3
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 5.1e-08 62.4 90 42.2
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 8.7e-08 61.6 48 56.2
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.1e-07 61.2 42 69.0
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 5.7e-07 58.9 62 43.5
MBI14_g20318_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D017722 2.8e-06 56.6 37 64.9
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 6.3e-06 55.5 28 82.1


User provided reference genes

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