Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1784 Acer truncatum HOM05D004941 ORTHO05D005624 3.2e-34 147.9 76 100.0
Atru.chr4.1786 Acer truncatum HOM05D004941 ORTHO05D005624 6.0e-33 143.7 76 97.4
Duzib212G1033 Durio zibethinus HOM05D004941 ORTHO05D005624 9.5e-31 136.3 76 88.2
COL.COLO4_34078 Corchorus olitorius HOM05D004941 ORTHO05D005624 1.2e-30 136.0 76 88.2
Thecc.04G211200 Theobroma cacao HOM05D004941 ORTHO05D005624 1.6e-30 135.6 76 86.8
TPR.G10093 Trifolium pratense HOM05D004941 ORTHO05D005624 1.6e-30 135.6 76 88.2
Eucgr.H00092 Eucalyptus grandis HOM05D004941 ORTHO05D005624 2.1e-30 135.2 76 86.8
FvH4_4g05880 Fragaria vesca HOM05D004941 ORTHO05D005624 2.1e-30 135.2 76 86.8
FAN12G1018 Fragaria x ananassa HOM05D004941 ORTHO05D005624 2.1e-30 135.2 76 86.8
FAN22G1917 Fragaria x ananassa HOM05D004941 ORTHO05D005624 2.1e-30 135.2 76 86.8
Cfa021915 Carpinus fangiana HOM05D004941 ORTHO05D005624 2.8e-30 134.8 76 86.8
Haze_11557 Corylus avellana HOM05D004941 ORTHO05D005624 2.8e-30 134.8 76 86.8
QL06p023335 Quercus lobata HOM05D004941 ORTHO05D005624 2.8e-30 134.8 75 86.7
arahy.Tifrunner.gnm1.ann1.4W8SKF Arachis hypogaea HOM05D004941 ORTHO05D005624 3.6e-30 134.4 76 85.5
CiPaw.01G126200 Carya illinoinensis HOM05D004941 ORTHO05D005624 3.6e-30 134.4 76 85.5
Potri.001G052100 Populus trichocarpa HOM05D004941 ORTHO05D005624 3.6e-30 134.4 76 86.8
Prupe.1G061100 Prunus persica HOM05D004941 ORTHO05D005624 3.6e-30 134.4 76 86.8
Cpa.g.c36552 Carica papaya HOM05D004941 ORTHO05D005624 4.7e-30 134.0 76 84.2
MD16G1235900 Malus domestica HOM05D004941 ORTHO05D005624 4.7e-30 134.0 76 86.8
Manes.15G050400 Manihot esculenta HOM05D004941 ORTHO05D005624 4.7e-30 134.0 76 85.5
TWI73G0643 Tripterygium wilfordii HOM05D004941 ORTHO05D005624 4.7e-30 134.0 76 85.5
CANSAT78G1419 Cannabis sativa HOM05D004941 ORTHO05D005624 6.2e-30 133.7 76 86.8
Gohir.D09G052984 Gossypium hirsutum HOM05D004941 ORTHO05D005624 6.2e-30 133.7 76 85.5
PGR142G1301 Punica granatum HOM05D004941 ORTHO05D005624 6.2e-30 133.7 76 85.5
Manes.03G152200 Manihot esculenta HOM05D004941 ORTHO05D005624 8.0e-30 133.3 74 86.5
PGR083G0368 Punica granatum HOM05D004941 ORTHO05D005624 8.0e-30 133.3 76 85.5
MELO3C006336.2 Cucumis melo HOM05D004941 ORTHO05D005624 1.1e-29 132.9 76 85.5
CsaV3_3G011260 Cucumis sativus L. HOM05D004941 ORTHO05D005624 1.1e-29 132.9 76 85.5
Duzib212G0897 Durio zibethinus HOM05D004941 ORTHO05D005624 1.1e-29 132.9 76 85.5
Sabra01G0036700 Salix brachista HOM05D004941 ORTHO05D005624 1.1e-29 132.9 76 84.2
GSVIVG01029054001 Vitis vinifera HOM05D004941 ORTHO05D005624 1.1e-29 132.9 76 84.2
Psat6g047760 Pisum sativum HOM05D004941 ORTHO05D005624 1.4e-29 132.5 76 85.5
FAN07G0685 Fragaria x ananassa HOM05D004941 ORTHO05D005624 1.8e-29 132.1 76 85.5
Lj6g0004918 Lotus japonicus HOM05D004941 ORTHO05D005624 1.8e-29 132.1 76 85.5
ClCG05G003570 Citrullus lanatus HOM05D004941 ORTHO05D005624 2.3e-29 131.7 76 84.2
Gorai.006G055700 Gossypium raimondii HOM05D004941 ORTHO05D005624 2.3e-29 131.7 74 86.5
Phvul.007G236700 Phaseolus vulgaris HOM05D004941 ORTHO05D005624 2.3e-29 131.7 76 84.2
VMungo0720G0486 Vigna mungo HOM05D004941 ORTHO05D005624 2.3e-29 131.7 76 84.2
FAN17G1669 Fragaria x ananassa HOM05D004941 ORTHO05D005624 3.1e-29 131.3 76 85.5
RcHm_v2.0_Chr4g0396981 Rosa chinensis HOM05D004941 ORTHO05D005624 3.1e-29 131.3 76 82.9
AL1G14400 Arabidopsis lyrata HOM05D004941 ORTHO05D005624 4.0e-29 131.0 76 81.6
Gohir.A09G052900 Gossypium hirsutum HOM05D004941 ORTHO05D005624 4.0e-29 131.0 76 85.5
SalBow2G0113 Salvia bowleyana HOM05D004941 ORTHO05D005624 4.0e-29 131.0 74 85.1
AT1G04690 Arabidopsis thaliana HOM05D004941 ORTHO05D005624 5.2e-29 130.6 76 81.6
CARHR004070 Cardamine hirsuta HOM05D004941 ORTHO05D005624 5.2e-29 130.6 76 80.3
BcaC07g36888 Brassica carinata HOM05D004941 ORTHO05D005624 6.8e-29 130.2 76 81.6
A08p36750 Brassica napus HOM05D004941 ORTHO05D005624 6.8e-29 130.2 76 81.6
A10p03120 Brassica napus HOM05D004941 ORTHO05D005624 6.8e-29 130.2 76 81.6
C05p02890 Brassica napus HOM05D004941 ORTHO05D005624 6.8e-29 130.2 76 81.6
C08p01390 Brassica napus HOM05D004941 ORTHO05D005624 6.8e-29 130.2 76 81.6
BolC5t29070H Brassica oleracea HOM05D004941 ORTHO05D005624 6.8e-29 130.2 76 81.6
BolC8t46947H Brassica oleracea HOM05D004941 ORTHO05D005624 6.8e-29 130.2 76 81.6
BraA08t35577Z Brassica rapa HOM05D004941 ORTHO05D005624 6.8e-29 130.2 76 81.6
BraA10t42585Z Brassica rapa HOM05D004941 ORTHO05D005624 6.8e-29 130.2 76 81.6
Duzib151G0226 Durio zibethinus HOM05D004941 ORTHO05D005624 6.8e-29 130.2 76 84.2
Thhalv10008181m.g Eutrema salsugineum HOM05D004941 ORTHO05D005624 6.8e-29 130.2 76 81.6
Glyma.20G077200 Glycine max HOM05D004941 ORTHO05D005624 6.8e-29 130.2 76 82.9
Sp1g03530 Schrenkiella parvula HOM05D004941 ORTHO05D005624 6.8e-29 130.2 76 81.6
Sed0000115 Sechium edule HOM05D004941 ORTHO05D005624 6.8e-29 130.2 76 85.5
SGA_v2.0_scaffold57G20152 Striga asiatica HOM05D004941 ORTHO05D005624 6.8e-29 130.2 76 81.6
Carub.0001s0394 Capsella rubella HOM05D004941 ORTHO05D005624 8.9e-29 129.8 76 80.3
Oeu022332.1 Olea europaea HOM05D004941 ORTHO05D005624 8.9e-29 129.8 76 81.6
THA.LOC104826109 Tarenaya hassleriana HOM05D004941 ORTHO05D005624 8.9e-29 129.8 76 81.6
Oeu006717.1 Olea europaea HOM05D004941 ORTHO05D005624 1.2e-28 129.4 76 81.6
TAR636G2508 Trochodendron aralioides HOM05D004941 ORTHO05D005624 1.2e-28 129.4 76 84.2
unitig_32.g11683 Utricularia gibba HOM05D004941 ORTHO05D005624 1.2e-28 129.4 76 82.9
unitig_748.g7345 Utricularia gibba HOM05D004941 ORTHO05D005624 1.2e-28 129.4 76 82.9
Actinidia34635 Actinidia chinensis HOM05D004941 ORTHO05D005624 1.5e-28 129.0 74 82.4
Aa31LG1G20190 Aethionema arabicum HOM05D004941 ORTHO05D005624 1.5e-28 129.0 76 78.9
BcaB03g13476 Brassica carinata HOM05D004941 ORTHO05D005624 1.5e-28 129.0 74 82.4
Ah.12g061340 Amaranthus hybridus HOM05D004941 ORTHO05D005624 2.0e-28 128.6 76 82.9
MSTRG.9834 Avicennia marina HOM05D004941 ORTHO05D005624 2.0e-28 128.6 76 81.6
Glyma.10G124800 Glycine max HOM05D004941 ORTHO05D005624 2.0e-28 128.6 76 81.6
THA.LOC104801049 Tarenaya hassleriana HOM05D004941 ORTHO05D005624 2.0e-28 128.6 76 80.3
Actinidia35949 Actinidia chinensis HOM05D004941 ORTHO05D005624 2.6e-28 128.3 76 80.3
CSS0021875 Camellia sinensis var. sinensis HOM05D004941 ORTHO05D005624 2.6e-28 128.3 76 82.9
Nn1g03138 Nelumbo nucifera HOM05D004941 ORTHO05D005624 3.4e-28 127.9 76 81.6
TWI09G1152 Tripterygium wilfordii HOM05D004941 ORTHO05D005624 3.4e-28 127.9 74 83.8
Ciclev10005408m.g Citrus clementina HOM05D004941 ORTHO05D005624 4.4e-28 127.5 76 81.6
vmacro15503 Vaccinium macrocarpon HOM05D004941 ORTHO05D005624 4.4e-28 127.5 76 80.3
EL10Ac2g02402 Beta vulgaris HOM05D004941 ORTHO05D005624 5.8e-28 127.1 76 81.6
MBI07_g19562_MAGBIO Magnolia biondii HOM05D004941 ORTHO05D005624 9.8e-28 126.3 76 80.3
MD13G1231200 Malus domestica HOM05D004941 ORTHO05D005624 9.8e-28 126.3 76 82.9
HPP92_020758 Vanilla planifolia HOM05D004941 ORTHO05D005624 9.8e-28 126.3 76 80.3
CiPaw.02G068500 Carya illinoinensis HOM05D004941 ORTHO05D005624 1.3e-27 125.9 74 82.4
Lalb_Chr01g0010801 Lupinus albus HOM05D004941 ORTHO05D005624 1.3e-27 125.9 76 80.3
CDE06G1864 Ceratophyllum demersum HOM05D004941 ORTHO05D005624 1.7e-27 125.6 76 80.3
Medtr1g047250 Medicago truncatula HOM05D004941 ORTHO05D005624 1.7e-27 125.6 76 81.6
Peaxi162Scf00817g00217 Petunia axillaris HOM05D004941 ORTHO05D005624 1.7e-27 125.6 76 78.9
Solyc12g098150.2 Solanum lycopersicum HOM05D004941 ORTHO05D005624 1.7e-27 125.6 76 81.6
Sopen12g032980 Solanum pennellii HOM05D004941 ORTHO05D005624 1.7e-27 125.6 76 81.6
PGSC0003DMG400016870 Solanum tuberosum HOM05D004941 ORTHO05D005624 1.7e-27 125.6 76 81.6
CAN.G706.24 Capsicum annuum HOM05D004941 ORTHO05D005624 2.2e-27 125.2 76 80.3
Nn3g19897 Nelumbo nucifera HOM05D004941 ORTHO05D005624 2.2e-27 125.2 76 80.3
Lsat_1_v5_gn_1_72461 Lactuca sativa HOM05D004941 ORTHO05D005624 2.9e-27 124.8 76 80.3
Migut.G00623 Erythranthe guttata HOM05D004941 ORTHO05D005624 3.7e-27 124.4 76 77.6
Lalb_Chr03g0036651 Lupinus albus HOM05D004941 ORTHO05D005624 3.7e-27 124.4 76 80.3
SGA_v2.0_scaffold155G37216 Striga asiatica HOM05D004941 ORTHO05D005624 3.7e-27 124.4 76 78.9
TAR365G1102 Trochodendron aralioides HOM05D004941 ORTHO05D005624 3.7e-27 124.4 75 78.7
MSTRG.4206 Avicennia marina HOM05D004941 ORTHO05D005624 4.9e-27 124.0 76 78.9
Dinv29557 Davidia involucrata HOM05D004941 ORTHO05D005624 4.9e-27 124.0 76 78.9
AUR62020272 Chenopodium quinoa HOM05D004941 ORTHO05D005624 6.4e-27 123.6 76 80.3
AUR62037730 Chenopodium quinoa HOM05D004941 ORTHO05D005624 6.4e-27 123.6 76 80.3
Cc03_g07250 Coffea canephora HOM05D004941 ORTHO05D005624 8.3e-27 123.2 76 78.9
THA.LOC104816018 Tarenaya hassleriana HOM05D004941 ORTHO05D005624 8.3e-27 123.2 73 79.5
ATR0787G155 Amborella trichopoda HOM05D004941 ORTHO05D005624 1.4e-26 122.5 76 78.9
Dinv38278 Davidia involucrata HOM05D004941 ORTHO05D005624 1.4e-26 122.5 76 77.6
Lj6C612G1 Lonicera japonica HOM05D004941 ORTHO05D005624 2.4e-26 121.7 76 76.3
DCAR_024319 Daucus carota HOM05D004941 ORTHO05D005624 3.2e-26 121.3 76 77.6
DCAR_027374 Daucus carota HOM05D004941 ORTHO05D005624 3.2e-26 121.3 76 78.9
HanXRQChr11g0342701 Helianthus annuus HOM05D004941 ORTHO05D005624 3.2e-26 121.3 76 76.3
HanXRQChr14g0435051 Helianthus annuus HOM05D004941 ORTHO05D005624 4.1e-26 120.9 76 75.0
TAR362G1130 Trochodendron aralioides HOM05D004941 ORTHO05D005624 4.1e-26 120.9 76 75.0
Zm00001eb258940 Zea mays HOM05D004941 ORTHO05D005624 5.4e-26 120.6 76 77.6
Os02g0817500 Oryza sativa ssp. japonica HOM05D004941 ORTHO05D005624 7.0e-26 120.2 76 76.3
Aqoxy2G03791 Aquilegia oxysepala HOM05D004941 ORTHO05D005624 1.2e-25 119.4 76 76.3
Lsat_1_v5_gn_2_43301 Lactuca sativa HOM05D004941 ORTHO05D005624 1.6e-25 119.0 74 77.0
Lj3A584G54 Lonicera japonica HOM05D004941 ORTHO05D005624 1.6e-25 119.0 76 73.7
ECA238G2545 Erigeron canadensis HOM05D004941 ORTHO05D005624 3.5e-25 117.9 75 74.7
Hund25548 Selenicereus undatus HOM05D004941 ORTHO05D005624 3.5e-25 117.9 76 76.3
PSO170G0276 Papaver somniferum HOM05D004941 ORTHO05D005624 6.0e-25 117.1 76 73.7
PSO764G0052 Papaver somniferum HOM05D004941 ORTHO05D005624 3.9e-24 114.4 76 72.4
CiPaw.01G126300 Carya illinoinensis HOM05D004941 ORTHO05D005624 1.1e-23 112.8 66 81.8
Mapoly0072s0010 Marchantia polymorpha HOM05D004941 ORTHO05D005624 1.2e-22 109.4 76 69.7
Nitab4.5_0009699g0010 Nicotiana tabacum HOM05D004941 ORTHO05D005624 1.8e-21 105.5 76 72.4
COL.COLO4_34077 Corchorus olitorius HOM05D004941 ORTHO05D005624 3.1e-21 104.8 76 71.1
SMO119G0453 Selaginella moellendorffii HOM05D004941 ORTHO05D005624 5.2e-21 104.0 74 68.9
SEGI_23376 Sequoiadendron giganteum HOM05D004941 ORTHO05D005624 5.8e-20 100.5 63 74.6
Pp3c9_7970 Physcomitrium patens HOM05D004941 ORTHO05D005624 6.0e-17 90.5 64 67.2
CBR_g12335 Chara braunii HOM05D004941 ORTHO05D005624 5.6e-15 84.0 66 62.1
Pp3c15_3990 Physcomitrium patens HOM05D004941 ORTHO05D005624 2.8e-14 81.6 70 55.7
Nitab4.5_0005337g0010 Nicotiana tabacum HOM05D004941 ORTHO05D005624 5.2e-13 77.4 76 57.9
arahy.Tifrunner.gnm1.ann1.9BGX48 Arachis hypogaea HOM05D004941 ORTHO05D005624 6.4e-11 70.5 39 87.2
Cpa.g.sc59.94 Carica papaya HOM05D004941 ORTHO05D005624 6.4e-11 70.5 39 87.2
Zm00001eb191380 Zea mays HOM05D004941 ORTHO05D005624 1.4e-10 69.3 39 87.2
Cre04.g217916 Chlamydomonas reinhardtii HOM05D000352 ORTHO05D005624 1.6e-09 65.9 61 50.8
CSS0034559 Camellia sinensis var. sinensis HOM05D004941 ORTHO05D005624 2.7e-09 65.1 39 76.9
AagrBONN_evm.TU.Sc2ySwM_228.3127 Anthoceros agrestis HOM05D004941 ORTHO05D005624 5.1e-08 60.8 44 65.9
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 6.6e-08 60.5 36 83.3


User provided reference genes

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