Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1769 Acer truncatum HOM05D005324 ORTHO05D001185 2.9e-296 1021.1 522 100.0
Atru.chr7.181 Acer truncatum HOM05D005324 ORTHO05D001185 5.1e-200 701.4 528 65.7
Atru.chr4.959 Acer truncatum HOM05D005324 ORTHO05D001185 7.2e-162 574.7 438 66.0
Atru.chr13.2462 Acer truncatum HOM05D005324 ORTHO05D001185 4.2e-146 522.3 454 63.4
Atru.chr10.1416 Acer truncatum HOM05D005324 ORTHO05D001185 1.6e-137 493.8 492 52.6
Atru.chr5.1763 Acer truncatum HOM05D005324 ORTHO05D001185 4.0e-136 489.2 430 60.0
Atru.chr1.2264 Acer truncatum HOM05D005324 ORTHO05D001185 5.9e-132 475.3 467 53.5
Ca_14742_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.5e-124 449.5 525 43.6
Ca_11659_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.0e-123 448.0 529 42.0
Atru.chr3.3306 Acer truncatum HOM05D000477 ORTHO05D001185 4.0e-120 436.0 513 48.1
Lj2g0007658 Lotus japonicus HOM05D005324 ORTHO05D001185 2.2e-118 430.3 518 42.7
Atru.chr13.2110 Acer truncatum HOM05D005324 ORTHO05D001185 2.4e-117 426.8 257 79.0
Ca_22549_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.1e-112 409.8 476 43.3
Lj3g0022640 Lotus japonicus HOM05D005324 ORTHO05D001185 3.4e-111 406.4 510 42.4
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 9.8e-111 404.8 397 55.9
Ca_14156_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.9e-110 402.5 523 39.2
Atru.chr9.330 Acer truncatum HOM05D005324 ORTHO05D001185 1.0e-107 394.8 298 62.1
Lj6g0006708 Lotus japonicus HOM05D005324 ORTHO05D001185 3.9e-107 392.9 537 40.0
Lj4g0014350 Lotus japonicus HOM05D005324 ORTHO05D001185 4.7e-105 386.0 518 39.2
Atru.chr1.2372 Acer truncatum HOM05D005324 ORTHO05D001185 4.6e-100 369.4 464 44.6
Ca_25846_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.3e-99 367.9 499 37.7
Lj6g0011364 Lotus japonicus HOM05D005324 ORTHO05D001185 1.2e-95 354.8 516 38.0
Thhalv10012231m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.9e-94 350.1 539 36.7
Ca_22528_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.1e-93 345.5 457 39.6
Atru.chr9.596 Acer truncatum HOM05D005324 ORTHO05D001185 3.9e-91 339.7 266 69.2
Thhalv10023188m.g Eutrema salsugineum HOM05D003376 ORTHO05D000002 3.6e-89 333.2 528 36.4
Thhalv10028344m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 4.8e-89 332.8 543 36.3
Ca_24116_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.7e-83 314.3 523 35.4
AL88U10020 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 9.6e-82 308.5 537 35.8
Ca_14763_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.1e-81 307.4 512 34.2
Atru.chr4.310 Acer truncatum HOM05D005324 ORTHO05D001185 4.0e-80 303.1 376 45.5
Atru.chr5.1824 Acer truncatum HOM05D005324 ORTHO05D001185 5.3e-80 302.8 192 68.2
AL6G42760 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 9.0e-80 302.0 536 32.8
Thhalv10003417m.g Eutrema salsugineum HOM05D003376 ORTHO05D000048 9.0e-80 302.0 537 33.0
Thhalv10028343m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.5e-79 301.2 534 32.6
AL1G57140 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.0e-79 300.8 532 32.7
AL8G17320 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 3.4e-79 300.1 530 34.3
Ca_23895_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.7e-73 280.0 525 33.1
Atru.chr3.2329 Acer truncatum HOM05D003326 ORTHO05D001185 8.1e-73 278.9 184 71.7
AL88U10010 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 1.0e-70 271.9 502 34.7
COL.COLO4_29280 Corchorus olitorius HOM05D003376 ORTHO05D001185 2.9e-70 270.4 500 34.4
Ca_23844_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.0e-68 262.7 415 37.1
Ca_30746_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.0e-68 262.7 415 37.1
Thhalv10028029m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.3e-67 261.5 534 31.6
Lj6g0018849 Lotus japonicus HOM05D005324 ORTHO05D001185 1.3e-67 261.5 373 39.1
Ca_14697_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.9e-67 260.0 491 31.8
Atru.chr9.334 Acer truncatum HOM05D005324 ORTHO05D001185 5.1e-67 259.6 162 74.7
Ca_05875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.1e-67 259.6 279 44.8
Ca_14332_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.1e-67 259.6 399 37.1
Thhalv10002230m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.1e-65 254.2 473 34.9
AL6G37690 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 3.7e-65 253.4 500 31.0
Cc00_g34090 Coffea canephora HOM05D005324 ORTHO05D001185 8.2e-65 252.3 534 32.2
AL8G17310 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 3.1e-64 250.4 530 30.8
Glyma.19G076000 Glycine max HOM05D005324 ORTHO05D001185 1.2e-63 248.4 404 35.9
Atru.chr5.1825 Acer truncatum HOM05D005324 ORTHO05D001185 7.6e-63 245.7 162 72.8
A05p12450 Brassica napus HOM05D003376 ORTHO05D001185 4.2e-61 240.0 430 33.3
A09p27420 Brassica napus HOM05D003376 ORTHO05D001185 9.3e-61 238.8 430 32.8
Thhalv10002934m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 9.3e-61 238.8 444 32.4
Lj4g0024804 Lotus japonicus HOM05D005324 ORTHO05D001185 6.7e-59 232.6 521 29.8
Ca_13672_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.7e-58 228.8 191 54.5
Ca_30430_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.7e-58 228.8 191 54.5
Atru.chr13.2474 Acer truncatum HOM05D005324 ORTHO05D001185 1.1e-56 225.3 168 70.8
Ca_05672_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.8e-56 224.6 300 38.7
Ca_22741_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.1e-56 223.8 197 50.3
Ca_30934_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.1e-56 223.8 197 50.3
Ca_03092_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.0e-55 221.1 191 49.2
Ca_15184_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.3e-54 218.4 284 39.4
Ca_19239_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.3e-54 218.4 316 38.6
Ca_23845_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.9e-54 217.2 466 29.8
Thhalv10001272m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.2e-52 211.8 454 30.4
Glyma.11G180400 Glycine max HOM05D005324 ORTHO05D001185 1.6e-52 211.5 523 28.5
Ca_14762_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.0e-51 207.2 169 54.4
Ca_02976_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.7e-51 206.1 193 47.7
Thhalv10003477m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.0e-47 194.5 261 40.2
Thecc.01G138000 Theobroma cacao HOM05D005324 ORTHO05D001185 3.4e-47 193.7 195 50.8
Ca_25326_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.9e-47 193.0 191 46.1
Ca_19341_v3 Cicer arietinum L. HOM05D005324 ORTHO05D000048 1.0e-46 192.2 291 35.7
Atru.chr1.2076 Acer truncatum HOM05D005324 ORTHO05D001185 1.3e-46 191.8 327 37.3
Thhalv10001103m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.5e-45 187.6 285 35.8
CANSAT80G1954 Cannabis sativa HOM05D005324 ORTHO05D001185 4.2e-45 186.8 203 44.8
Glyma.06G234900 Glycine max HOM05D005324 ORTHO05D001185 5.5e-45 186.4 278 36.3
A06p25220 Brassica napus HOM05D003376 ORTHO05D001185 3.6e-44 183.7 285 35.4
Ca_30800_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.6e-44 183.7 492 27.0
Atru.chr4.2110 Acer truncatum HOM05D005324 ORTHO05D001185 4.7e-44 183.3 150 59.3
AL8G17360 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 1.5e-42 178.3 361 32.4
HanXRQChr09g0267851 Helianthus annuus HOM05D003376 ORTHO05D001185 3.3e-42 177.2 279 36.2
HanXRQChr09g0262521 Helianthus annuus HOM05D003376 ORTHO05D001185 7.4e-42 176.0 278 35.6
HanXRQChr09g0262541 Helianthus annuus HOM05D003326 ORTHO05D001185 7.4e-42 176.0 278 35.6
HanXRQChr09g0262491 Helianthus annuus HOM05D003376 ORTHO05D001185 1.3e-41 175.3 278 35.6
HanXRQChr10g0281981 Helianthus annuus HOM05D003376 ORTHO05D001185 2.2e-41 174.5 292 33.6
HanXRQChr09g0262531 Helianthus annuus HOM05D003376 ORTHO05D001185 8.2e-41 172.6 255 36.1
ECA246G2607 Erigeron canadensis HOM05D003326 ORTHO05D001185 1.5e-39 168.3 259 36.7
Ca_24087_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.9e-39 166.4 494 24.3
ECA248G1715 Erigeron canadensis HOM05D005324 ORTHO05D001185 1.3e-38 165.2 190 43.2
ECA236G2931 Erigeron canadensis HOM05D003376 ORTHO05D001185 6.5e-38 162.9 258 37.2
Atru.chr3.2328 Acer truncatum HOM05D005324 ORTHO05D001185 8.5e-38 162.5 108 66.7
Ca_13200_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.2e-37 160.2 183 39.9
Ca_29875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.2e-37 160.2 183 39.9
ECA248G1318 Erigeron canadensis HOM05D003376 ORTHO05D001185 1.6e-36 158.3 252 36.9
Cc00_g28290 Coffea canephora HOM05D003326 ORTHO05D001185 4.7e-36 156.8 450 29.3
Atru.chr11.502 Acer truncatum HOM05D005324 ORTHO05D001185 6.1e-36 156.4 112 73.2
Lj2g0023412 Lotus japonicus HOM05D005324 ORTHO05D018017 1.0e-35 155.6 129 53.5
C07p27990 Brassica napus HOM05D003376 ORTHO05D001185 1.5e-34 151.8 330 32.1
HanXRQChr09g0262551 Helianthus annuus HOM05D003376 ORTHO05D001185 1.5e-34 151.8 192 38.5
Cc00_g17730 Coffea canephora HOM05D003326 ORTHO05D001185 5.7e-34 149.8 197 39.6
ECA236G2821 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.7e-34 149.8 206 37.4
Lj3g0011497 Lotus japonicus HOM05D005324 ORTHO05D001185 1.3e-33 148.7 174 39.7
AL6G41750 Arabidopsis lyrata HOM05D003376 ORTHO05D000002 3.7e-33 147.1 279 32.6
Thhalv10027218m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 5.9e-31 139.8 326 31.9
Thhalv10000496m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 7.7e-31 139.4 196 34.7
BolC1t03802H Brassica oleracea HOM05D003376 ORTHO05D001185 3.8e-30 137.1 277 31.8
PGSC0003DMG400042319 Solanum tuberosum HOM05D019581 ORTHO05D018017 3.6e-28 130.6 186 33.9
C04p09000 Brassica napus HOM05D003376 ORTHO05D001185 6.1e-28 129.8 223 31.8
BolC1t03750H Brassica oleracea HOM05D003376 ORTHO05D001185 1.8e-27 128.3 208 33.7
Ca_04090_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.2e-27 126.7 195 36.4
Lj1g0026229 Lotus japonicus HOM05D005324 ORTHO05D001185 8.8e-27 125.9 452 25.7
Thhalv10000705m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 3.4e-26 124.0 348 29.3
Cc07_g21310 Coffea canephora HOM05D003376 ORTHO05D011089 1.3e-25 122.1 274 30.7
Ca_19340_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.7e-25 121.7 234 39.7
Thecc.07G158200 Theobroma cacao HOM05D005324 ORTHO05D001185 2.8e-25 120.9 184 35.9
ECA234G2242 Erigeron canadensis HOM05D000088 ORTHO05D001030 9.1e-24 115.9 201 36.8
BcaB05g22490 Brassica carinata HOM05D003376 ORTHO05D001185 2.5e-21 107.8 157 36.3
arahy.Tifrunner.gnm1.ann1.BZ6XIA Arachis hypogaea HOM05D003326 ORTHO05D000002 5.5e-21 106.7 87 50.6
Ca_20262_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.7e-20 103.6 175 40.0
BcaB05g23142 Brassica carinata HOM05D003376 ORTHO05D001185 1.4e-19 102.1 127 37.0
Atru.chr11.226 Acer truncatum HOM05D005324 ORTHO05D001185 1.8e-19 101.7 47 89.4
Ca_00995_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.0e-19 100.9 184 39.1
BcaC09g49326 Brassica carinata HOM05D003376 ORTHO05D001185 4.0e-19 100.5 119 40.3
Cc00_g09810 Coffea canephora HOM05D003326 ORTHO05D001185 9.8e-18 95.9 200 31.0
COL.COLO4_27206 Corchorus olitorius HOM05D003326 ORTHO05D001185 1.8e-16 91.7 101 40.6
BcaC06g35708 Brassica carinata HOM05D003376 ORTHO05D001185 4.1e-16 90.5 201 24.9
TAR633G1644 Trochodendron aralioides HOM05D005152 ORTHO05D006162 1.2e-15 89.0 109 38.5
MBI14_g23481_MAGBIO Magnolia biondii HOM05D005324 ORTHO05D001185 1.0e-14 85.9 159 30.2
BolC7t41653H Brassica oleracea HOM05D003376 ORTHO05D001185 1.1e-13 82.4 97 39.2
AL8G17340 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 1.5e-13 82.0 101 36.6
BcaB04g18321 Brassica carinata HOM05D003376 ORTHO05D001185 4.2e-13 80.5 99 37.4
Atru.chr1.2263 Acer truncatum HOM05D005324 ORTHO05D001185 2.1e-12 78.2 43 72.1
Ca_07874_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.1e-12 76.6 79 41.8
Ca_28515_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.1e-12 76.6 72 48.6
MBI03_g38333_MAGBIO Magnolia biondii HOM05D005324 ORTHO05D001185 1.0e-11 75.9 196 33.7
Medtr3g436690 Medicago truncatula HOM05D005324 ORTHO05D001185 6.8e-11 73.2 84 39.3
Ca_11652_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.9e-11 72.8 81 38.3
Ca_05166_v3 Cicer arietinum L. HOM05D005324 ORTHO05D000002 4.4e-10 70.5 102 39.2
C07p11800 Brassica napus HOM05D003376 ORTHO05D001185 1.7e-09 68.6 85 38.8
BraA06t26272Z Brassica rapa HOM05D003376 ORTHO05D001185 2.2e-09 68.2 93 35.5
Carub.0002s1007 Capsella rubella HOM05D003376 ORTHO05D001185 3.7e-09 67.4 179 31.8
Atru.chr11.224 Acer truncatum HOM05D005324 ORTHO05D001185 1.8e-08 65.1 33 93.9
C03p79090 Brassica napus HOM05D003376 ORTHO05D001185 2.4e-08 64.7 85 36.5
Ca_18104_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-07 62.4 85 35.3
BcaC02g10207 Brassica carinata HOM05D003376 ORTHO05D001185 3.5e-07 60.8 67 44.8
Ca_21962_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.8e-07 59.7 74 33.8
PGSC0003DMG400040410 Solanum tuberosum HOM05D016590 ORTHO05D018017 7.8e-07 59.7 124 25.0
Duzib187G1529 Durio zibethinus HOM05D005324 ORTHO05D001185 1.3e-06 58.9 93 33.3
BraA09t38519Z Brassica rapa HOM05D003376 ORTHO05D001185 2.9e-06 57.8 47 53.2
Ca_23425_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.6e-06 56.2 124 29.8
Medtr4g103910 Medicago truncatula HOM05D005324 ORTHO05D001185 8.6e-06 56.2 76 34.2


User provided reference genes

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