Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1455 Acer truncatum HOM05D007605 ORTHO05D009572 9.6e-26 119.4 61 100.0
CANSAT01G0287 Cannabis sativa HOM05D007605 ORTHO05D009572 1.1e-21 105.9 59 88.1
Haze_00851 Corylus avellana HOM05D007605 ORTHO05D009572 1.4e-21 105.5 60 85.0
FAN05G0946 Fragaria x ananassa HOM05D007605 ORTHO05D009572 2.5e-21 104.8 59 86.4
FAN05G3507 Fragaria x ananassa HOM05D007605 ORTHO05D009572 2.5e-21 104.8 59 86.4
RcHm_v2.0_Chr4g0405791 Rosa chinensis HOM05D007605 ORTHO05D009572 3.2e-21 104.4 59 86.4
Cfa015674 Carpinus fangiana HOM05D007605 ORTHO05D009572 4.2e-21 104.0 60 83.3
Ciclev10023247m.g Citrus clementina HOM05D007605 ORTHO05D009572 7.2e-21 103.2 61 80.3
FvH4_6g21131 Fragaria vesca HOM05D007605 ORTHO05D009572 7.2e-21 103.2 59 84.7
FAN14G0446 Fragaria x ananassa HOM05D007605 ORTHO05D009572 7.2e-21 103.2 59 84.7
Atru.chr12.2308 Acer truncatum HOM05D007605 ORTHO05D009572 1.6e-20 102.1 61 85.2
RcHm_v2.0_Chr7g0232231 Rosa chinensis HOM05D007605 ORTHO05D009572 1.6e-20 102.1 59 84.7
SGA_v2.0_scaffold25G11005 Striga asiatica HOM05D000384 ORTHO05D009572 1.6e-20 102.1 59 83.1
CSS0027032 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 2.7e-20 101.3 57 86.0
CSS0028313 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 2.7e-20 101.3 57 86.0
DCAR_030842 Daucus carota HOM05D007605 ORTHO05D009572 3.6e-20 100.9 60 81.7
CiPaw.01G168900 Carya illinoinensis HOM05D007605 ORTHO05D009572 6.1e-20 100.1 59 83.1
MD03G1210800 Malus domestica HOM05D007605 ORTHO05D009572 6.1e-20 100.1 59 83.1
Nn1g09550 Nelumbo nucifera HOM05D007605 ORTHO05D009572 7.9e-20 99.8 59 81.4
MELO3C011854.2 Cucumis melo HOM05D007605 ORTHO05D009572 1.0e-19 99.4 60 78.3
Prupe.4G204500 Prunus persica HOM05D007605 ORTHO05D009572 1.3e-19 99.0 59 81.4
arahy.Tifrunner.gnm1.ann1.FBG7WK Arachis hypogaea HOM05D007605 ORTHO05D009572 1.8e-19 98.6 59 81.4
arahy.Tifrunner.gnm1.ann1.MPL0H7 Arachis hypogaea HOM05D007605 ORTHO05D009572 1.8e-19 98.6 59 81.4
PGR142G0642 Punica granatum HOM05D007605 ORTHO05D009572 1.8e-19 98.6 56 82.1
Rhsim09G0008600 Rhododendron simsii HOM05D007605 ORTHO05D009572 1.8e-19 98.6 59 86.4
Sc13g0006890 Simmondsia chinensis HOM05D007605 ORTHO05D009572 1.8e-19 98.6 59 83.1
Carub.0004s2631 Capsella rubella HOM05D007605 ORTHO05D009572 2.3e-19 98.2 55 87.3
MD11G1225700 Malus domestica HOM05D007605 ORTHO05D009572 2.3e-19 98.2 58 84.5
Potri.019G096500 Populus trichocarpa HOM05D007605 ORTHO05D009572 3.0e-19 97.8 57 82.5
Potri.019G096700 Populus trichocarpa HOM05D007605 ORTHO05D009572 3.0e-19 97.8 57 82.5
Lj6g0006319 Lotus japonicus HOM05D007605 ORTHO05D009572 3.9e-19 97.4 59 79.7
Lj6g0016727 Lotus japonicus HOM05D007605 ORTHO05D009572 3.9e-19 97.4 59 79.7
VMungo1383G0010 Vigna mungo HOM05D003647 ORTHO05D004182 3.9e-19 97.4 59 79.7
Ah.07g202920 Amaranthus hybridus HOM05D007605 ORTHO05D009572 5.1e-19 97.1 57 80.7
Medtr7g091060 Medicago truncatula HOM05D007605 ORTHO05D009572 5.1e-19 97.1 59 78.0
SalBow6G4154 Salvia bowleyana HOM05D007605 ORTHO05D009572 5.1e-19 97.1 59 78.0
Ca_08431_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 6.7e-19 96.7 59 78.0
Ca_14651_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 6.7e-19 96.7 59 78.0
COL.COLO4_38114 Corchorus olitorius HOM05D007605 ORTHO05D009572 6.7e-19 96.7 58 81.0
Thecc.04G164300 Theobroma cacao HOM05D007605 ORTHO05D009572 6.7e-19 96.7 58 81.0
AL4G42650 Arabidopsis lyrata HOM05D007605 ORTHO05D009572 8.7e-19 96.3 55 85.5
Duzib212G0337 Durio zibethinus HOM05D007605 ORTHO05D009572 8.7e-19 96.3 58 81.0
Sed0018718 Sechium edule HOM05D007605 ORTHO05D009572 8.7e-19 96.3 60 76.7
Migut.N03059 Erythranthe guttata HOM05D007605 ORTHO05D009572 1.1e-18 95.9 59 79.7
Glyma.08G364500 Glycine max HOM05D007605 ORTHO05D009572 1.1e-18 95.9 57 80.7
Manes.05G136900 Manihot esculenta HOM05D007605 ORTHO05D009572 1.1e-18 95.9 61 75.4
Manes.08G010900 Manihot esculenta HOM05D007605 ORTHO05D009572 1.1e-18 95.9 61 75.4
Sabra19G0108500 Salix brachista HOM05D000005 ORTHO05D000012 1.1e-18 95.9 57 80.7
THA.LOC104802329 Tarenaya hassleriana HOM05D007605 ORTHO05D009572 1.1e-18 95.9 55 85.5
Glyma.18G297600 Glycine max HOM05D007605 ORTHO05D009572 1.5e-18 95.5 59 78.0
Lj1g0002800 Lotus japonicus HOM05D007605 ORTHO05D009572 1.5e-18 95.5 59 78.0
Lj1g0021920 Lotus japonicus HOM05D007605 ORTHO05D009572 1.5e-18 95.5 59 78.0
AT2G43780 Arabidopsis thaliana HOM05D007605 ORTHO05D009572 1.9e-18 95.1 55 85.5
Cpa.g.sc9.378 Carica papaya HOM05D007605 ORTHO05D009572 1.9e-18 95.1 59 78.0
Eucgr.H04449 Eucalyptus grandis HOM05D007605 ORTHO05D009572 1.9e-18 95.1 58 81.0
Sabra13G0106700 Salix brachista HOM05D007605 ORTHO05D009572 1.9e-18 95.1 57 80.7
Psat3g074320 Pisum sativum HOM05D007605 ORTHO05D009572 2.5e-18 94.7 59 78.0
TWI63G1406 Tripterygium wilfordii HOM05D007605 ORTHO05D009572 2.5e-18 94.7 59 81.4
Lalb_Chr04g0257371 Lupinus albus HOM05D007605 ORTHO05D009572 3.3e-18 94.4 57 80.7
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 5.7e-18 93.6 55 83.6
EL10Ac3g06103 Beta vulgaris HOM05D007605 ORTHO05D009572 5.7e-18 93.6 59 78.0
AUR62002411 Chenopodium quinoa HOM05D007605 ORTHO05D009572 5.7e-18 93.6 56 76.8
Phvul.008G005000 Phaseolus vulgaris HOM05D007605 ORTHO05D009572 7.4e-18 93.2 59 78.0
Gohir.A10G144600 Gossypium hirsutum HOM05D007605 ORTHO05D009572 9.7e-18 92.8 58 79.3
CARHR138960 Cardamine hirsuta HOM05D007605 ORTHO05D009572 1.3e-17 92.4 55 83.6
Os12g0611700 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 1.3e-17 92.4 54 81.5
TPR.G18242 Trifolium pratense HOM05D007605 ORTHO05D009572 1.3e-17 92.4 56 78.6
Peaxi162Scf00579g00018 Petunia axillaris HOM05D007605 ORTHO05D009572 1.6e-17 92.0 59 74.6
PGSC0003DMG400016297 Solanum tuberosum HOM05D007605 ORTHO05D009572 1.6e-17 92.0 59 74.6
Sopen06g018580 Solanum pennellii HOM05D007605 ORTHO05D009572 2.2e-17 91.7 59 72.9
MBI07_g11492_MAGBIO Magnolia biondii HOM05D007605 ORTHO05D009572 2.8e-17 91.3 53 83.0
Sp4g25850 Schrenkiella parvula HOM05D007605 ORTHO05D009572 2.8e-17 91.3 55 81.8
Nitab4.5_0004700g0030 Nicotiana tabacum HOM05D001130 ORTHO05D001052 3.7e-17 90.9 60 71.7
Nitab4.5_0007474g0060 Nicotiana tabacum HOM05D007605 ORTHO05D009572 3.7e-17 90.9 60 71.7
ECA248G2718 Erigeron canadensis HOM05D007605 ORTHO05D009572 6.3e-17 90.1 52 80.8
Glyma.19G073500 Glycine max HOM05D007605 ORTHO05D009572 6.3e-17 90.1 57 75.4
BcaB05g23281 Brassica carinata HOM05D007605 ORTHO05D009572 8.2e-17 89.7 55 80.0
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 1.1e-16 89.4 55 78.2
Aqoxy4G02871 Aquilegia oxysepala HOM05D007605 ORTHO05D009572 1.4e-16 89.0 53 81.1
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 1.4e-16 89.0 56 76.8
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 1.4e-16 89.0 56 76.8
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 1.4e-16 89.0 56 76.8
Lsat_1_v5_gn_1_21060 Lactuca sativa HOM05D007605 ORTHO05D009572 1.4e-16 89.0 54 77.8
BcaB01g03362 Brassica carinata HOM05D007605 ORTHO05D009572 1.8e-16 88.6 55 78.2
BcaC01g05214 Brassica carinata HOM05D007605 ORTHO05D009572 1.8e-16 88.6 55 78.2
C03p29150 Brassica napus HOM05D007605 ORTHO05D009572 1.8e-16 88.6 55 78.2
BolC3t15267H Brassica oleracea HOM05D007605 ORTHO05D009572 1.8e-16 88.6 55 78.2
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 2.4e-16 88.2 55 78.2
Thhalv10001711m.g Eutrema salsugineum HOM05D007605 ORTHO05D009572 2.4e-16 88.2 58 77.6
PSO573G0041 Papaver somniferum HOM05D007605 ORTHO05D009572 2.4e-16 88.2 54 79.6
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 4.1e-16 87.4 55 78.2
A03p24460 Brassica napus HOM05D007605 ORTHO05D009572 4.1e-16 87.4 55 78.2
BraA03t11655Z Brassica rapa HOM05D007605 ORTHO05D009572 4.1e-16 87.4 55 78.2
Os05g0103800 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 9.0e-16 86.3 52 80.8
Gohir.D10G122400 Gossypium hirsutum HOM05D007605 ORTHO05D009572 1.2e-15 85.9 59 76.3
Gorai.011G134700 Gossypium raimondii HOM05D007605 ORTHO05D009572 1.2e-15 85.9 59 76.3
ATR0743G065 Amborella trichopoda HOM05D007605 ORTHO05D009572 1.5e-15 85.5 57 70.2
ClCG11G013540 Citrullus lanatus HOM05D007605 ORTHO05D009572 7.7e-15 83.2 50 78.0
QL10p056550 Quercus lobata HOM05D007605 ORTHO05D009572 2.9e-14 81.3 54 74.1
CsaV3_5G030160 Cucumis sativus L. HOM05D007605 ORTHO05D009572 3.8e-14 80.9 47 80.9
Glyma.19G030600 Glycine max HOM05D007605 ORTHO05D009572 5.0e-14 80.5 57 73.7
GSVIVG01038176001 Vitis vinifera HOM05D007605 ORTHO05D009572 1.1e-13 79.3 56 71.4
Lsat_1_v5_gn_1_74540 Lactuca sativa HOM05D007605 ORTHO05D009572 7.2e-13 76.6 42 85.7
Lj6C218G0 Lonicera japonica HOM05D000384 ORTHO05D000468 3.6e-12 74.3 42 83.3
Glyma.17G205632 Glycine max HOM05D007605 ORTHO05D009572 4.6e-12 73.9 61 60.7
vmacro23387 Vaccinium macrocarpon HOM05D007605 ORTHO05D009572 7.9e-12 73.2 39 89.7
BcaC05g29066 Brassica carinata HOM05D007605 ORTHO05D009572 1.3e-09 65.9 45 71.1
Mapoly0044s0040 Marchantia polymorpha HOM05D007605 ORTHO05D009572 1.7e-09 65.5 46 71.7
Pp3c9_12740 Physcomitrium patens HOM05D007605 ORTHO05D009572 1.2e-07 59.3 46 60.9


User provided reference genes

Program Settings