Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1444 Acer truncatum HOM05D004144 ORTHO05D004902 1.5e-175 619.4 305 100.0
Atru.chr1.1960 Acer truncatum HOM05D004144 ORTHO05D004902 3.5e-132 475.3 307 81.4
Ciclev10002120m.g Citrus clementina HOM05D004144 ORTHO05D004902 2.6e-119 432.6 305 71.8
CiPaw.04G048600 Carya illinoinensis HOM05D004144 ORTHO05D004902 6.2e-105 384.8 315 65.7
Gorai.001G122400 Gossypium raimondii HOM05D004144 ORTHO05D004902 1.1e-98 364.0 314 64.3
Gohir.D07G114100 Gossypium hirsutum HOM05D004144 ORTHO05D004902 4.3e-98 362.1 314 64.0
Cc07_g12990 Coffea canephora HOM05D004144 ORTHO05D004902 5.6e-98 361.7 318 63.2
Gohir.A07G110500 Gossypium hirsutum HOM05D004144 ORTHO05D004902 1.2e-97 360.5 314 64.0
Duzib170G0191 Durio zibethinus HOM05D004144 ORTHO05D004902 2.1e-97 359.8 314 63.4
Gohir.A11G203400 Gossypium hirsutum HOM05D004144 ORTHO05D004902 3.6e-97 359.0 314 63.7
Lalb_Chr20g0117051 Lupinus albus HOM05D004144 ORTHO05D004902 8.1e-97 357.8 317 62.8
Thecc.09G283000 Theobroma cacao HOM05D004144 ORTHO05D004902 3.1e-96 355.9 311 64.0
Eucgr.J01628 Eucalyptus grandis HOM05D004144 ORTHO05D004902 4.0e-96 355.5 281 67.6
VMungo1383G1060 Vigna mungo HOM05D004144 ORTHO05D004902 6.8e-96 354.8 313 62.3
Lalb_Chr18g0053671 Lupinus albus HOM05D004144 ORTHO05D004902 1.5e-95 353.6 317 62.5
Glyma.18G043100 Glycine max HOM05D004144 ORTHO05D004902 9.8e-95 350.9 317 61.8
Phvul.001G227800 Phaseolus vulgaris HOM05D004144 ORTHO05D004902 9.8e-95 350.9 305 62.0
Haze_14304 Corylus avellana HOM05D004144 ORTHO05D004902 1.3e-94 350.5 336 59.2
Cfa007770 Carpinus fangiana HOM05D004144 ORTHO05D004902 2.2e-94 349.7 317 62.1
Glyma.11G213600 Glycine max HOM05D004144 ORTHO05D004902 3.7e-94 349.0 317 61.2
RcHm_v2.0_Chr3g0452351 Rosa chinensis HOM05D004144 ORTHO05D004902 6.4e-94 348.2 312 63.5
TAR629G3342 Trochodendron aralioides HOM05D004144 ORTHO05D004902 6.4e-94 348.2 317 61.2
SalBow3G3518 Salvia bowleyana HOM05D004144 ORTHO05D004902 1.4e-93 347.1 307 62.9
Prupe.7G012700 Prunus persica HOM05D004144 ORTHO05D004902 1.9e-93 346.7 313 62.9
RcHm_v2.0_Chr1g0359421 Rosa chinensis HOM05D004144 ORTHO05D004902 2.4e-93 346.3 312 63.1
Peaxi162Scf00525g00621 Petunia axillaris HOM05D004144 ORTHO05D004902 3.2e-93 345.9 320 60.9
ClCG07G009570 Citrullus lanatus HOM05D004144 ORTHO05D004902 1.2e-92 344.0 261 69.3
Hund18774 Selenicereus undatus HOM05D004144 ORTHO05D004902 1.6e-92 343.6 260 68.1
SGA_v2.0_scaffold108G30989 Striga asiatica HOM05D004144 ORTHO05D004902 1.6e-92 343.6 307 61.6
MD07G1041100 Malus domestica HOM05D004144 ORTHO05D004902 2.1e-92 343.2 283 65.0
Prupe.3G281100 Prunus persica HOM05D004144 ORTHO05D004902 2.7e-92 342.8 313 62.0
MD02G1272100 Malus domestica HOM05D004144 ORTHO05D004902 3.5e-92 342.4 283 64.7
THA.LOC104815917 Tarenaya hassleriana HOM05D004144 ORTHO05D004902 4.6e-92 342.0 312 60.6
MELO3C017589.2 Cucumis melo HOM05D004144 ORTHO05D004902 7.8e-92 341.3 296 61.5
PGR042G3225 Punica granatum HOM05D004144 ORTHO05D004902 7.8e-92 341.3 306 63.1
CSS0050506 Camellia sinensis var. sinensis HOM05D004144 ORTHO05D004902 2.3e-91 339.7 259 70.7
Sed0013521 Sechium edule HOM05D004144 ORTHO05D004902 2.3e-91 339.7 260 69.2
TWI23G0771 Tripterygium wilfordii HOM05D004144 ORTHO05D004902 2.3e-91 339.7 319 59.6
AL1G11770 Arabidopsis lyrata HOM05D004144 ORTHO05D004902 3.0e-91 339.3 247 71.3
Lj4A255T25 Lonicera japonica HOM05D004144 ORTHO05D004902 3.0e-91 339.3 262 67.9
vmacro18517 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 3.0e-91 339.3 302 61.6
Hma1.2p1_0034F.1_g021300 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 3.9e-91 339.0 272 66.9
PGR102G3261 Punica granatum HOM05D004144 ORTHO05D004902 3.9e-91 339.0 318 60.7
arahy.Tifrunner.gnm1.ann1.87SQNY Arachis hypogaea HOM05D004144 ORTHO05D004902 5.1e-91 338.6 316 60.1
MSTRG.15643 Avicennia marina HOM05D004144 ORTHO05D004902 6.6e-91 338.2 319 59.2
arahy.Tifrunner.gnm1.ann1.U9M4C7 Arachis hypogaea HOM05D004144 ORTHO05D004902 1.1e-90 337.4 316 60.1
Thhalv10008363m.g Eutrema salsugineum HOM05D004144 ORTHO05D004902 1.1e-90 337.4 291 62.9
Lj6g0015186 Lotus japonicus HOM05D004144 ORTHO05D004902 1.1e-90 337.4 317 61.2
Sed0015810 Sechium edule HOM05D004144 ORTHO05D004902 1.9e-90 336.7 271 67.5
AT1G02410 Arabidopsis thaliana HOM05D004144 ORTHO05D004902 2.5e-90 336.3 247 70.4
A09p68730 Brassica napus HOM05D004144 ORTHO05D004902 3.3e-90 335.9 228 74.6
CARHR001740 Cardamine hirsuta HOM05D004144 ORTHO05D004902 3.3e-90 335.9 247 70.4
Lsat_1_v5_gn_3_67200 Lactuca sativa HOM05D004144 ORTHO05D004902 3.3e-90 335.9 224 74.6
BcaC07g42317 Brassica carinata HOM05D004144 ORTHO05D004902 4.3e-90 335.5 228 74.6
Carub.0001s0149 Capsella rubella HOM05D004144 ORTHO05D004902 4.3e-90 335.5 247 70.4
Nitab4.5_0013309g0010 Nicotiana tabacum HOM05D004144 ORTHO05D004902 4.3e-90 335.5 306 61.8
Sp1g01500 Schrenkiella parvula HOM05D004144 ORTHO05D004902 4.3e-90 335.5 288 63.2
Sopen05g007260 Solanum pennellii HOM05D004144 ORTHO05D004902 5.6e-90 335.1 306 61.8
BcaC07g42390 Brassica carinata HOM05D004144 ORTHO05D004902 1.2e-89 334.0 228 74.1
C08p53300 Brassica napus HOM05D004144 ORTHO05D004902 1.2e-89 334.0 228 74.1
BolC8t52845H Brassica oleracea HOM05D004144 ORTHO05D004902 1.2e-89 334.0 228 74.1
GSVIVG01024421001 Vitis vinifera HOM05D004144 ORTHO05D004902 1.2e-89 334.0 321 59.2
Aa31LG1G10050 Aethionema arabicum HOM05D004144 ORTHO05D004902 2.8e-89 332.8 225 74.2
CAN.G616.15 Capsicum annuum HOM05D004144 ORTHO05D004902 2.8e-89 332.8 320 59.7
Medtr3g053650 Medicago truncatula HOM05D004144 ORTHO05D004902 8.1e-89 331.3 317 59.9
ECA238G1245 Erigeron canadensis HOM05D004144 ORTHO05D004902 1.4e-88 330.5 238 69.7
Migut.H02241 Erythranthe guttata HOM05D004144 ORTHO05D004902 1.4e-88 330.5 217 77.9
Nn1g04486 Nelumbo nucifera HOM05D004144 ORTHO05D004902 5.2e-88 328.6 316 59.8
Sc18g0000970 Simmondsia chinensis HOM05D004144 ORTHO05D004902 5.2e-88 328.6 226 73.5
BcaC05g24628 Brassica carinata HOM05D004144 ORTHO05D004902 6.8e-88 328.2 228 72.4
PSO170G2172 Papaver somniferum HOM05D004144 ORTHO05D004902 8.9e-88 327.8 312 60.3
BraA09t42212Z Brassica rapa HOM05D004144 ORTHO05D004902 1.2e-87 327.4 237 71.3
HanXRQChr16g0532751 Helianthus annuus HOM05D004144 ORTHO05D004902 1.2e-87 327.4 248 68.1
EL10Ac1g00114 Beta vulgaris HOM05D004144 ORTHO05D004902 1.5e-87 327.0 225 75.1
Psat5g142040 Pisum sativum HOM05D004144 ORTHO05D004902 2.0e-87 326.6 323 57.9
unitig_32.g10726 Utricularia gibba HOM05D004144 ORTHO05D004902 2.0e-87 326.6 304 60.9
A08p37680 Brassica napus HOM05D004144 ORTHO05D004902 2.6e-87 326.2 296 61.8
BraA08t35664Z Brassica rapa HOM05D004144 ORTHO05D004902 2.6e-87 326.2 296 61.8
CDE04G3693 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 3.4e-87 325.9 252 67.1
MBI16_g12479_MAGBIO Magnolia biondii HOM05D004144 ORTHO05D004902 5.8e-87 325.1 256 67.6
Oeu062160.1 Olea europaea HOM05D004144 ORTHO05D004902 7.6e-87 324.7 226 73.0
C03p00140 Brassica napus HOM05D004144 ORTHO05D004902 9.9e-87 324.3 229 72.9
COL.COLO4_19858 Corchorus olitorius HOM05D004144 ORTHO05D004902 1.7e-86 323.6 351 55.6
Manes.16G049900 Manihot esculenta HOM05D004144 ORTHO05D004902 2.2e-86 323.2 235 69.8
TPR.G26653 Trifolium pratense HOM05D004144 ORTHO05D004902 3.8e-86 322.4 318 59.1
A10p01190 Brassica napus HOM05D004144 ORTHO05D004902 4.9e-86 322.0 247 67.6
Ca_17077_v3 Cicer arietinum L. HOM05D004144 ORTHO05D004902 6.4e-86 321.6 220 74.1
SGA_v2.0_scaffold2G00964 Striga asiatica HOM05D004144 ORTHO05D004902 6.4e-86 321.6 306 59.5
vmacro19339 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 2.4e-85 319.7 280 62.5
CiPaw.03G077800 Carya illinoinensis HOM05D004144 ORTHO05D004902 7.1e-85 318.2 305 60.0
BcaB01g06136 Brassica carinata HOM05D004144 ORTHO05D004902 1.2e-84 317.4 228 71.9
BolC3t12580H Brassica oleracea HOM05D004144 ORTHO05D004902 1.2e-84 317.4 228 71.9
C05p01210 Brassica napus HOM05D004144 ORTHO05D004902 2.7e-84 316.2 308 58.8
BolC5t28904H Brassica oleracea HOM05D004144 ORTHO05D004902 4.6e-84 315.5 233 69.5
ATR0626G272 Amborella trichopoda HOM05D004144 ORTHO05D004902 1.0e-83 314.3 254 65.7
FAN06G4796 Fragaria x ananassa HOM05D004144 ORTHO05D004902 1.0e-83 314.3 313 58.1
FAN01G2657 Fragaria x ananassa HOM05D004144 ORTHO05D004902 1.7e-83 313.5 301 59.5
arahy.Tifrunner.gnm1.ann1.F8HJNJ Arachis hypogaea HOM05D004144 ORTHO05D004902 5.1e-83 312.0 369 50.9
Duzib168G0342 Durio zibethinus HOM05D004144 ORTHO05D004902 5.1e-83 312.0 236 72.5
FAN10G1720 Fragaria x ananassa HOM05D004144 ORTHO05D004902 5.1e-83 312.0 251 66.1
FAN10G4152 Fragaria x ananassa HOM05D004144 ORTHO05D004902 5.1e-83 312.0 301 59.5
CsaV3_UNG144100 Cucumis sativus L. HOM05D004144 ORTHO05D004902 1.5e-82 310.5 273 62.6
SEGI_01185 Sequoiadendron giganteum HOM05D004144 ORTHO05D004902 1.9e-82 310.1 232 68.1
BraA10t42397Z Brassica rapa HOM05D004144 ORTHO05D004902 3.3e-82 309.3 252 65.1
HPP92_002286 Vanilla planifolia HOM05D004144 ORTHO05D004902 4.3e-82 308.9 228 69.3
Potri.001G078500 Populus trichocarpa HOM05D004144 ORTHO05D004902 5.6e-82 308.5 198 78.8
Zm00001eb055360 Zea mays HOM05D004144 ORTHO05D004902 9.6e-82 307.8 220 69.1
CsaV3_4G004740 Cucumis sativus L. HOM05D004144 ORTHO05D004902 8.1e-81 304.7 228 69.3
BcaNung06859 Brassica carinata HOM05D004144 ORTHO05D004902 1.1e-80 304.3 228 68.0
Actinidia28789 Actinidia chinensis HOM05D004144 ORTHO05D004902 6.9e-80 301.6 227 69.2
Os03g0718600 Oryza sativa ssp. japonica HOM05D004144 ORTHO05D004902 1.2e-79 300.8 212 69.8
Lj2A513G59 Lonicera japonica HOM05D004144 ORTHO05D004902 5.8e-79 298.5 256 62.5
Oeu048969.2 Olea europaea HOM05D004144 ORTHO05D004902 1.3e-78 297.4 341 51.3
BcaB03g13513 Brassica carinata HOM05D004144 ORTHO05D004902 2.2e-78 296.6 234 66.7
Aqoxy3G04002 Aquilegia oxysepala HOM05D004144 ORTHO05D004902 1.6e-76 290.4 229 65.1
Dinv19068 Davidia involucrata HOM05D004144 ORTHO05D000107 1.9e-74 283.5 301 55.8
C04p03290 Brassica napus HOM05D004144 ORTHO05D004902 7.3e-74 281.6 282 57.1
Solyc05g012440.4 Solanum lycopersicum HOM05D004144 ORTHO05D004902 1.8e-72 276.9 187 74.9
BcaB01g06133 Brassica carinata HOM05D004144 ORTHO05D004902 2.4e-72 276.6 287 56.1
SMO169G0145 Selaginella moellendorffii HOM05D004144 ORTHO05D004902 4.5e-71 272.3 211 64.0
Mapoly0070s0059 Marchantia polymorpha HOM05D004144 ORTHO05D004902 2.2e-70 270.0 257 56.8
FAN03G0820 Fragaria x ananassa HOM05D004144 ORTHO05D004902 6.4e-70 268.5 180 75.6
PSO782G2695 Papaver somniferum HOM05D004144 ORTHO05D004902 6.4e-70 268.5 230 63.0
QL02p060046 Quercus lobata HOM05D004144 ORTHO05D004902 6.0e-68 261.9 225 66.7
Medtr3g064810 Medicago truncatula HOM05D004144 ORTHO05D004902 5.6e-66 255.4 219 63.5
Sabra01G0055800 Salix brachista HOM05D004144 ORTHO05D004902 2.1e-65 253.4 394 42.6
CANSAT35G0424 Cannabis sativa HOM05D004144 ORTHO05D004902 8.1e-65 251.5 225 62.7
AagrBONN_evm.TU.Sc2ySwM_228.342 Anthoceros agrestis HOM05D004144 ORTHO05D004902 1.1e-64 251.1 217 60.8
CBR_g51986 Chara braunii HOM05D004144 ORTHO05D004902 1.5e-63 247.3 234 55.1
Rhsim05G0054900 Rhododendron simsii HOM05D004144 ORTHO05D004902 3.5e-60 236.1 233 57.9
Nitab4.5_0000905g0140 Nicotiana tabacum HOM05D004144 ORTHO05D004902 7.9e-60 235.0 227 58.1
Rhsim08G0020500 Rhododendron simsii HOM05D004144 ORTHO05D004902 6.7e-59 231.9 293 48.1
AUR62023515 Chenopodium quinoa HOM05D004144 ORTHO05D004902 1.1e-58 231.1 209 59.3
AUR62037409 Chenopodium quinoa HOM05D004144 ORTHO05D004902 1.2e-55 221.1 131 84.0
MCO11G668 Micromonas commoda HOM05D004144 ORTHO05D004902 3.8e-54 216.1 209 52.2
SHI20752 Sapria himalayana HOM05D004144 ORTHO05D004902 7.1e-53 211.8 137 75.2
Cre01.g055550 Chlamydomonas reinhardtii HOM05D004144 ORTHO05D004902 8.7e-51 204.9 295 42.7
Hma1.2p1_0158F.1_g069830 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 1.3e-46 191.0 232 51.7
PRCOL_00006103 Prasinoderma coloniale HOM05D004144 ORTHO05D004902 1.5e-42 177.6 217 47.0
BcaNung07044 Brassica carinata HOM05D004144 ORTHO05D004902 1.0e-38 164.9 102 79.4
Haze_26263 Corylus avellana HOM05D004144 ORTHO05D004902 5.0e-38 162.5 218 39.9
BcaB03g15782 Brassica carinata HOM05D004144 ORTHO05D004902 3.2e-37 159.8 149 57.7
CsaV3_UNG141080 Cucumis sativus L. HOM05D004144 ORTHO05D004902 1.2e-36 157.9 106 75.5
CsaV3_UNG216460 Cucumis sativus L. HOM05D004144 ORTHO05D004902 1.2e-36 157.9 106 75.5
Haze_26986 Corylus avellana HOM05D004144 ORTHO05D004902 2.2e-33 147.1 211 37.0
Gohir.A10G080150 Gossypium hirsutum HOM05D004144 ORTHO05D004902 1.5e-31 141.0 105 72.4
DCAR_025183 Daucus carota HOM05D002069 ORTHO05D004902 2.0e-31 140.6 77 88.3
Pp3c16_1230 Physcomitrium patens HOM05D004144 ORTHO05D004902 1.7e-30 137.5 93 73.1
Cfa022599 Carpinus fangiana HOM05D004144 ORTHO05D004902 2.5e-29 133.7 177 43.5
BcaB03g13511 Brassica carinata HOM05D004144 ORTHO05D004902 5.5e-29 132.5 210 43.8
BcaB08g36056 Brassica carinata HOM05D004144 ORTHO05D004902 1.2e-28 131.3 126 60.3
TAR002G0001 Trochodendron aralioides HOM05D004144 ORTHO05D004902 2.7e-28 130.2 166 48.8
BcaNung06862 Brassica carinata HOM05D004144 ORTHO05D004902 2.8e-25 120.2 91 69.2
Dinv36681 Davidia involucrata HOM05D004144 ORTHO05D004902 8.2e-25 118.6 107 57.9
BolC9t57687H Brassica oleracea HOM05D004144 ORTHO05D004902 9.1e-24 115.2 122 57.4
BcaC02g12462 Brassica carinata HOM05D004144 ORTHO05D004902 1.0e-22 111.7 141 48.9
AUR62038774 Chenopodium quinoa HOM05D004144 ORTHO05D004902 5.0e-22 109.4 64 82.8
C09p48370 Brassica napus HOM05D004144 ORTHO05D004902 5.2e-19 99.4 85 63.5
Gohir.A08G125401 Gossypium hirsutum HOM05D004144 ORTHO05D004902 2.6e-18 97.1 138 44.9
arahy.Tifrunner.gnm1.ann1.GZZ31L Arachis hypogaea HOM05D001327 ORTHO05D004902 1.7e-17 94.4 67 68.7
BcaNung06861 Brassica carinata HOM05D004144 ORTHO05D004902 2.2e-17 94.0 66 69.7
BcaC04g20051 Brassica carinata HOM05D004144 ORTHO05D004902 4.8e-17 92.8 126 46.8
Oeu009435.1 Olea europaea HOM05D004144 ORTHO05D004902 1.8e-16 90.9 48 89.6
HanXRQChr03g0088171 Helianthus annuus HOM05D004144 ORTHO05D004902 1.6e-15 87.8 50 80.0
HanXRQChr13g0395861 Helianthus annuus HOM05D004144 ORTHO05D004902 1.6e-15 87.8 50 80.0
BcaC05g24626 Brassica carinata HOM05D004144 ORTHO05D004902 2.7e-15 87.0 53 79.2
CDE06G2511 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 4.5e-15 86.3 146 43.8
arahy.Tifrunner.gnm1.ann1.9TQH81 Arachis hypogaea HOM05D001327 ORTHO05D001271 1.1e-13 81.6 62 66.1
arahy.Tifrunner.gnm1.ann1.X1YH8V Arachis hypogaea HOM05D004144 ORTHO05D038922 4.0e-11 73.2 63 61.9
Oeu009434.1 Olea europaea HOM05D004144 ORTHO05D004902 1.3e-09 68.2 36 88.9


User provided reference genes

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