Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 7.2e-116 420.6 218 100.0
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 8.1e-59 231.1 194 64.4
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 8.4e-56 221.1 202 56.9
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 9.3e-55 217.6 189 61.4
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.1e-54 216.5 156 68.6
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.0e-53 214.2 145 72.4
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 1.0e-53 214.2 160 66.9
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 3.9e-53 212.2 187 62.6
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 8.7e-53 211.1 209 58.9
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 8.7e-53 211.1 146 72.6
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 1.1e-52 210.7 147 70.1
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 1.3e-51 207.2 210 56.2
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.6e-51 206.8 216 53.7
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 2.8e-51 206.1 153 66.7
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 3.7e-51 205.7 220 56.8
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 3.7e-51 205.7 203 56.7
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 4.8e-51 205.3 156 65.4
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 4.8e-51 205.3 147 70.7
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 6.2e-51 204.9 150 68.0
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.4e-50 203.8 148 68.2
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 1.8e-50 203.4 141 68.8
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.8e-50 203.4 148 67.6
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 3.1e-50 202.6 143 69.2
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 4.5e-49 198.7 153 62.1
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 7.6e-49 198.0 141 72.3
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 2.2e-48 196.4 233 51.9
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 6.5e-48 194.9 147 63.3
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 1.1e-47 194.1 144 65.3
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 2.5e-47 193.0 146 64.4
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 5.5e-47 191.8 142 68.3
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 1.6e-46 190.3 146 62.3
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 6.0e-46 188.3 158 62.0
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 7.9e-46 188.0 185 57.8
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 7.9e-46 188.0 159 61.6
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 7.9e-46 188.0 158 62.0
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 1.3e-45 187.2 147 63.3
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.3e-45 186.4 146 61.6
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 5.1e-45 185.3 138 67.4
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 8.7e-45 184.5 146 63.7
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 4.8e-43 178.7 159 57.9
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 6.3e-43 178.3 203 50.2
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 1.4e-42 177.2 207 47.8
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 5.3e-42 175.3 167 54.5
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.0e-41 173.3 156 59.6
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 2.0e-41 173.3 212 47.2
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 7.6e-41 171.4 140 64.3
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 2.2e-40 169.9 124 68.5
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 5.0e-40 168.7 151 57.6
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 2.5e-39 166.4 152 57.9
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 2.7e-38 162.9 205 49.3
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 4.6e-38 162.2 161 55.9
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 7.9e-38 161.4 194 46.9
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 1.3e-37 160.6 161 55.3
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 2.3e-37 159.8 161 55.3
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 3.0e-37 159.5 228 43.0
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 3.9e-37 159.1 146 61.0
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 5.1e-37 158.7 147 60.5
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 3.3e-36 156.0 158 54.4
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 2.2e-35 153.3 121 66.1
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 3.7e-35 152.5 204 45.1
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 8.2e-35 151.4 141 57.4
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 1.5e-33 147.1 159 52.2
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 3.4e-33 146.0 141 56.0
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.0e-32 144.4 223 46.2
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 1.0e-32 144.4 109 64.2
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 3.8e-32 142.5 127 58.3
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 5.0e-32 142.1 127 58.3
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 7.2e-31 138.3 102 62.7
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 6.1e-30 135.2 140 49.3
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 3.0e-29 132.9 125 52.8
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 1.1e-26 124.4 154 45.5
QL93p1902_0792 Quercus lobata HOM05D003796 ORTHO05D004486 1.4e-26 124.0 96 62.5
Sabra13G0104400 Salix brachista HOM05D003796 ORTHO05D004486 1.4e-26 124.0 119 56.3
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 1.2e-25 120.9 124 46.0
QL10p054570 Quercus lobata HOM05D003796 ORTHO05D004486 1.2e-25 120.9 96 61.5
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 2.0e-25 120.2 140 45.0
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 3.4e-25 119.4 132 45.5
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 7.7e-25 118.2 160 44.4
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 5.0e-24 115.5 80 70.0
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.9e-23 113.6 145 49.0
FAN07G1083 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.1e-22 110.2 117 53.8
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 3.9e-21 105.9 114 46.5
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 6.7e-21 105.1 142 41.5
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 1.1e-20 104.4 133 39.8
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 2.0e-20 103.6 188 36.2
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.0e-20 103.6 93 60.2
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 5.7e-20 102.1 186 34.9
ClCG06G001080 Citrullus lanatus HOM05D003796 ORTHO05D004486 9.7e-20 101.3 134 45.5
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 1.7e-19 100.5 129 41.9
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 2.2e-19 100.1 129 40.3
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 2.8e-19 99.8 129 40.3
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 2.8e-19 99.8 142 38.0
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 3.7e-19 99.4 104 43.3
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 6.3e-19 98.6 119 42.0
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 1.4e-18 97.4 142 38.0
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.8e-18 97.1 66 71.2
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.8e-18 97.1 143 37.8
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 3.1e-18 96.3 143 37.1
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 3.1e-18 96.3 118 43.2
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 4.1e-18 95.9 132 37.9
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 4.1e-18 95.9 117 41.9
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 4.1e-18 95.9 204 30.9
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 4.1e-18 95.9 154 37.7
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 7.0e-18 95.1 140 37.9
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 7.0e-18 95.1 143 36.4
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 9.1e-18 94.7 161 36.6
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 9.1e-18 94.7 114 42.1
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 1.2e-17 94.4 106 43.4
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 2.0e-17 93.6 113 42.5
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 2.6e-17 93.2 148 33.8
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 2.6e-17 93.2 140 36.4
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 2.6e-17 93.2 135 36.3
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 3.5e-17 92.8 130 39.2
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 3.5e-17 92.8 151 35.8
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 4.5e-17 92.4 130 38.5
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 4.5e-17 92.4 114 38.6
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 4.5e-17 92.4 110 39.1
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 4.5e-17 92.4 150 35.3
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 4.5e-17 92.4 126 38.1
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 5.9e-17 92.0 104 41.3
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 5.9e-17 92.0 121 43.0
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 7.7e-17 91.7 105 42.9
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 7.7e-17 91.7 154 35.1
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 7.7e-17 91.7 173 33.5
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 1.0e-16 91.3 111 38.7
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 1.0e-16 91.3 141 39.0
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.7e-16 90.5 144 37.5
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.7e-16 90.5 142 36.6
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.7e-16 90.5 142 36.6
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 2.9e-16 89.7 141 36.2
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 2.9e-16 89.7 141 34.8
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 3.8e-16 89.4 141 35.5
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 3.8e-16 89.4 146 36.3
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 3.8e-16 89.4 134 36.6
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 5.0e-16 89.0 140 37.1
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 6.5e-16 88.6 162 33.3
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 6.5e-16 88.6 146 36.3
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 8.5e-16 88.2 111 36.9
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 8.5e-16 88.2 147 34.0
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 1.5e-15 87.4 132 34.8
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 1.9e-15 87.0 139 36.0
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 1.9e-15 87.0 133 36.1
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 3.2e-15 86.3 135 33.3
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 4.2e-15 85.9 142 35.2
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 4.2e-15 85.9 111 39.6
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 4.2e-15 85.9 116 34.5
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 5.5e-15 85.5 159 35.2
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 1.6e-14 84.0 171 31.6
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 6.1e-14 82.0 146 32.9
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.8e-13 80.5 124 33.9
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 5.2e-13 79.0 150 31.3
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 6.7e-13 78.6 142 35.9
Nitab4.5_0000856g0240 Nicotiana tabacum HOM05D003796 ORTHO05D004486 6.7e-13 78.6 84 53.6
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.5e-12 77.4 244 25.4
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.5e-12 77.4 134 32.8
QL10p054574 Quercus lobata HOM05D003796 ORTHO05D004486 3.3e-12 76.3 53 73.6
QL93p1902_0789 Quercus lobata HOM05D003796 ORTHO05D004486 3.3e-12 76.3 53 73.6
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 7.5e-12 75.1 139 30.9
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 7.5e-12 75.1 81 44.4
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 2.2e-11 73.6 108 34.3
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.4e-10 70.1 210 28.6
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 2.4e-10 70.1 121 33.1
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 2.2e-08 63.5 166 26.5
Haze_01371 Corylus avellana HOM05D003796 ORTHO05D004486 4.2e-07 59.3 111 36.9
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 5.5e-07 58.9 142 28.9
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 4.7e-06 55.8 77 37.7


User provided reference genes

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