Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 3.5e-59 231.5 121 100.0
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 3.4e-46 188.3 123 80.5
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 4.4e-46 188.0 120 80.0
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 4.8e-45 184.5 120 79.2
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 1.1e-44 183.3 120 79.2
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 1.4e-44 183.0 121 80.2
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.8e-44 182.6 121 79.3
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.6e-43 179.5 121 74.4
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 1.0e-42 176.8 113 77.9
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 1.0e-42 176.8 121 74.4
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.0e-42 176.8 121 74.4
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 1.3e-42 176.4 119 74.8
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 2.2e-42 175.6 119 74.8
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 2.2e-42 175.6 117 78.6
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 6.5e-42 174.1 121 76.0
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 6.5e-42 174.1 121 76.0
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 6.5e-42 174.1 121 73.6
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 8.5e-42 173.7 113 78.8
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 1.5e-41 172.9 121 75.2
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 1.9e-41 172.6 121 76.0
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 2.5e-41 172.2 116 77.6
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 2.5e-41 172.2 121 72.7
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 4.2e-41 171.4 119 76.5
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 4.2e-41 171.4 119 72.3
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 5.5e-41 171.0 117 75.2
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 5.5e-41 171.0 121 75.2
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 7.2e-41 170.6 121 76.0
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 7.2e-41 170.6 121 76.0
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 7.2e-41 170.6 121 72.7
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 7.2e-41 170.6 110 79.1
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 2.1e-40 169.1 121 72.7
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 2.1e-40 169.1 122 73.0
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 2.1e-40 169.1 119 73.1
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 6.1e-40 167.5 111 74.8
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 6.1e-40 167.5 118 76.3
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 6.1e-40 167.5 119 73.1
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.8e-39 166.0 119 70.6
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 1.8e-39 166.0 111 73.9
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.8e-39 166.0 121 74.4
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.8e-39 166.0 118 72.9
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 2.3e-39 165.6 116 74.1
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 4.0e-39 164.9 123 70.7
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 4.0e-39 164.9 126 69.0
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 4.0e-39 164.9 110 73.6
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 5.2e-39 164.5 111 73.9
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 5.2e-39 164.5 119 71.4
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 6.8e-39 164.1 119 69.7
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 6.8e-39 164.1 123 69.9
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 8.8e-39 163.7 122 69.7
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.2e-38 163.3 116 73.3
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 1.2e-38 163.3 123 69.9
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 1.2e-38 163.3 116 72.4
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.5e-38 162.9 121 71.9
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 2.0e-38 162.5 120 70.8
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 2.0e-38 162.5 120 70.8
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 2.6e-38 162.2 119 69.7
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.6e-38 162.2 115 74.8
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 2.6e-38 162.2 109 76.1
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 3.4e-38 161.8 124 69.4
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 3.4e-38 161.8 119 70.6
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 3.4e-38 161.8 121 71.1
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 4.4e-38 161.4 119 70.6
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 4.4e-38 161.4 123 69.1
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 7.5e-38 160.6 111 72.1
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 7.5e-38 160.6 120 70.0
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 7.5e-38 160.6 118 72.9
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 7.5e-38 160.6 118 72.9
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 9.8e-38 160.2 121 71.1
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 1.3e-37 159.8 108 73.1
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 1.3e-37 159.8 113 74.3
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 1.3e-37 159.8 108 74.1
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.3e-37 159.8 114 72.8
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 1.7e-37 159.5 108 73.1
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 1.7e-37 159.5 120 70.0
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 1.7e-37 159.5 121 68.6
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.7e-37 159.5 113 75.2
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.7e-37 159.5 113 75.2
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.2e-37 159.1 101 78.2
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 2.8e-37 158.7 111 70.3
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 4.9e-37 157.9 121 67.8
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 6.3e-37 157.5 100 78.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 6.3e-37 157.5 100 78.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 6.3e-37 157.5 100 78.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 6.3e-37 157.5 100 78.0
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 6.3e-37 157.5 117 67.5
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 8.3e-37 157.1 114 73.7
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 8.3e-37 157.1 114 73.7
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 8.3e-37 157.1 114 73.7
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.4e-36 156.4 113 70.8
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.4e-36 156.4 114 71.1
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 1.8e-36 156.0 103 77.7
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 1.8e-36 156.0 106 72.6
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 1.8e-36 156.0 114 74.6
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.8e-36 156.0 102 75.5
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.8e-36 156.0 113 71.7
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 2.4e-36 155.6 102 76.5
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 2.4e-36 155.6 103 74.8
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 2.4e-36 155.6 100 77.0
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 3.1e-36 155.2 101 76.2
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 3.1e-36 155.2 113 72.6
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 4.1e-36 154.8 116 70.7
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 9.2e-36 153.7 116 68.1
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 1.2e-35 153.3 106 73.6
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 1.6e-35 152.9 103 72.8
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 2.7e-35 152.1 111 71.2
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 4.5e-35 151.4 98 76.5
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 5.9e-35 151.0 122 64.8
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 7.8e-35 150.6 118 67.8
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 1.3e-34 149.8 119 67.2
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 1.7e-34 149.4 104 73.1
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 2.3e-34 149.1 121 66.9
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 3.8e-34 148.3 109 67.0
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 3.8e-34 148.3 119 66.4
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 5.6e-33 144.4 126 65.1
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 8.0e-32 140.6 112 65.2
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 3.0e-31 138.7 120 59.2
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 5.2e-31 137.9 101 71.3
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 6.8e-31 137.5 103 71.8
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 8.9e-31 137.1 109 66.1
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 8.9e-31 137.1 94 72.3
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.7e-29 131.7 85 76.5
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 6.4e-29 131.0 107 64.5
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 4.3e-25 118.2 85 74.1
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.6e-24 116.3 87 66.7
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 6.2e-24 114.4 111 55.9
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 1.2e-22 110.2 110 50.9
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 2.6e-22 109.0 92 65.2
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 2.6e-22 109.0 92 65.2
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 3.4e-22 108.6 98 55.1
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 2.9e-21 105.5 69 73.9
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 9.2e-20 100.5 64 71.9
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 2.0e-19 99.4 69 71.0
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 6.0e-19 97.8 67 71.6
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 7.8e-19 97.4 65 72.3
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 9.5e-17 90.5 67 65.7
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 1.8e-15 86.3 116 49.1
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 8.9e-15 84.0 56 75.0
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 3.4e-14 82.0 103 46.6
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.3e-13 80.1 57 68.4
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 1.7e-13 79.7 87 50.6
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 3.7e-13 78.6 115 42.6
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 4.9e-13 78.2 72 56.9
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 4.1e-12 75.1 83 51.8
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.6e-11 73.2 71 54.9
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.0e-10 70.5 66 57.6
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 3.0e-10 68.9 121 38.8
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 5.1e-10 68.2 50 70.0
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 5.1e-10 68.2 59 54.2
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 9.5e-09 63.9 54 66.7
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 9.5e-09 63.9 56 60.7
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 1.6e-08 63.2 53 60.4
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 8.1e-08 60.8 91 45.1
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.8e-07 59.7 44 68.2
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 3.1e-07 58.9 80 45.0
SGA_v2.0_scaffold13G06711 Striga asiatica HOM05D001997 ORTHO05D005560 3.4e-06 55.5 31 80.6


User provided reference genes

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