Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1350 Acer truncatum HOM05D007459 ORTHO05D009234 7.6e-92 340.5 174 100.0
Ciclev10022478m.g Citrus clementina HOM05D007459 ORTHO05D009234 4.7e-57 224.9 185 64.9
QL10p052586 Quercus lobata HOM05D007459 ORTHO05D009234 1.7e-54 216.5 176 65.3
Haze_01410 Corylus avellana HOM05D007459 ORTHO05D009234 3.7e-54 215.3 174 63.2
Haze_01404 Corylus avellana HOM05D007459 ORTHO05D009234 2.4e-53 212.6 174 62.6
Duzib151G0483 Durio zibethinus HOM05D007459 ORTHO05D009234 9.1e-53 210.7 173 63.0
Cfa015229 Carpinus fangiana HOM05D007459 ORTHO05D009234 2.0e-52 209.5 174 62.1
CiPaw.01G173000 Carya illinoinensis HOM05D007459 ORTHO05D009234 5.9e-52 208.0 177 61.6
MD04G1047100 Malus domestica HOM05D007459 ORTHO05D009234 1.4e-50 203.4 174 62.1
Prupe.1G201700 Prunus persica HOM05D007459 ORTHO05D009234 1.6e-49 199.9 174 62.1
Manes.04G050800 Manihot esculenta HOM05D007459 ORTHO05D009234 2.7e-49 199.1 175 59.4
Thecc.04G171000 Theobroma cacao HOM05D007459 ORTHO05D009234 2.7e-49 199.1 174 60.3
MELO3C017778.2 Cucumis melo HOM05D007459 ORTHO05D009234 1.1e-47 193.7 174 56.9
Gohir.D02G110600 Gossypium hirsutum HOM05D007459 ORTHO05D009234 1.1e-47 193.7 174 60.3
Lalb_Chr22g0352011 Lupinus albus HOM05D007459 ORTHO05D009234 2.0e-47 193.0 175 58.3
Gorai.005G125500 Gossypium raimondii HOM05D007459 ORTHO05D009234 5.7e-47 191.4 174 59.8
Lj3g0013618 Lotus japonicus HOM05D007459 ORTHO05D009234 7.4e-47 191.0 174 59.8
Potri.007G134400 Populus trichocarpa HOM05D007459 ORTHO05D009234 1.3e-46 190.3 178 53.9
PGR142G0909 Punica granatum HOM05D007459 ORTHO05D009234 2.8e-46 189.1 176 58.0
RcHm_v2.0_Chr2g0138101 Rosa chinensis HOM05D007459 ORTHO05D009234 2.8e-46 189.1 171 55.6
Sabra07G0109100 Salix brachista HOM05D007459 ORTHO05D009234 3.7e-46 188.7 178 52.8
Gohir.A02G092500 Gossypium hirsutum HOM05D007459 ORTHO05D009234 4.8e-46 188.3 174 58.6
Thhalv10001662m.g Eutrema salsugineum HOM05D007459 ORTHO05D009234 1.4e-45 186.8 173 56.1
Hma1.2p1_2359F.1_g320593 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 1.8e-45 186.4 175 57.1
C04p70510 Brassica napus HOM05D007459 ORTHO05D009234 2.4e-45 186.0 172 57.0
CARHR138660 Cardamine hirsuta HOM05D007459 ORTHO05D009234 7.0e-45 184.5 173 55.5
FvH4_6g31340 Fragaria vesca HOM05D007459 ORTHO05D009234 7.0e-45 184.5 171 56.1
FAN14G2685 Fragaria x ananassa HOM05D007459 ORTHO05D009234 7.0e-45 184.5 171 56.1
Hma1.2p1_0554F.1_g177940 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 9.1e-45 184.1 175 56.6
A04p32820 Brassica napus HOM05D007459 ORTHO05D009234 1.6e-44 183.3 172 56.4
BraA04t18744Z Brassica rapa HOM05D007459 ORTHO05D009234 1.6e-44 183.3 172 56.4
CANSAT56G1213 Cannabis sativa HOM05D007459 ORTHO05D009234 2.0e-44 183.0 173 56.6
COL.COLO4_28394 Corchorus olitorius HOM05D007459 ORTHO05D009234 3.5e-44 182.2 175 56.6
Haze_01399 Corylus avellana HOM05D007459 ORTHO05D009234 3.5e-44 182.2 173 55.5
FAN05G5726 Fragaria x ananassa HOM05D007459 ORTHO05D009234 3.5e-44 182.2 171 55.0
AL4G42340 Arabidopsis lyrata HOM05D007459 ORTHO05D009234 7.7e-44 181.0 172 55.8
BcaB06g29324 Brassica carinata HOM05D007459 ORTHO05D009234 7.7e-44 181.0 172 55.8
CsaV3_4G002640 Cucumis sativus L. HOM05D007459 ORTHO05D009234 7.7e-44 181.0 165 54.5
BcaC02g07169 Brassica carinata HOM05D007459 ORTHO05D009234 1.3e-43 180.3 172 55.8
BcaC02g07170 Brassica carinata HOM05D007459 ORTHO05D009234 1.3e-43 180.3 172 55.8
BolC4t28553H Brassica oleracea HOM05D007459 ORTHO05D009234 1.3e-43 180.3 172 55.8
CSS0017730 Camellia sinensis var. sinensis HOM05D007459 ORTHO05D009234 2.2e-43 179.5 176 54.5
Lj6A129T18 Lonicera japonica HOM05D007459 ORTHO05D009234 2.2e-43 179.5 175 56.0
Carub.0004s2600 Capsella rubella HOM05D007459 ORTHO05D009234 2.9e-43 179.1 177 53.7
Dinv44169 Davidia involucrata HOM05D007459 ORTHO05D009234 2.9e-43 179.1 174 55.7
Sp4g25650 Schrenkiella parvula HOM05D007459 ORTHO05D009234 6.5e-43 177.9 176 54.0
Sed0000488 Sechium edule HOM05D007459 ORTHO05D009234 1.1e-42 177.2 174 53.4
Ca_01236_v3 Cicer arietinum L. HOM05D007459 ORTHO05D009234 1.2e-41 173.7 174 55.7
TPR.G6565 Trifolium pratense HOM05D007459 ORTHO05D009234 1.2e-41 173.7 173 56.1
AT2G43540 Arabidopsis thaliana HOM05D007459 ORTHO05D009234 1.6e-41 173.3 172 52.3
TPR.G13012 Trifolium pratense HOM05D007459 ORTHO05D009234 2.7e-41 172.6 175 54.9
TWI38G0757 Tripterygium wilfordii HOM05D007459 ORTHO05D009234 2.7e-41 172.6 163 56.4
BolC4t28554H Brassica oleracea HOM05D007459 ORTHO05D009234 4.7e-41 171.8 162 55.6
C04p70520 Brassica napus HOM05D007459 ORTHO05D009234 8.0e-41 171.0 162 55.6
Medtr2g099440 Medicago truncatula HOM05D007459 ORTHO05D009234 8.0e-41 171.0 174 54.0
Cc03_g12180 Coffea canephora HOM05D007459 ORTHO05D009234 1.4e-40 170.2 181 52.5
THA.LOC104805901 Tarenaya hassleriana HOM05D007459 ORTHO05D009234 1.4e-40 170.2 180 52.8
TAR362G1157 Trochodendron aralioides HOM05D007459 ORTHO05D009234 1.4e-40 170.2 175 54.3
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 1.2e-39 167.2 171 50.3
Nitab4.5_0013525g0010 Nicotiana tabacum HOM05D007459 ORTHO05D009234 2.6e-39 166.0 177 52.5
Peaxi162Scf00180g00063 Petunia axillaris HOM05D007459 ORTHO05D009234 7.5e-39 164.5 172 51.2
Phvul.005G155700 Phaseolus vulgaris HOM05D007459 ORTHO05D009234 7.5e-39 164.5 170 51.8
PGSC0003DMG400027018 Solanum tuberosum HOM05D007459 ORTHO05D009234 7.5e-39 164.5 174 54.0
Nn1g09730 Nelumbo nucifera HOM05D007459 ORTHO05D009234 1.3e-38 163.7 174 52.3
Solyc06g073170.1 Solanum lycopersicum HOM05D007459 ORTHO05D009234 2.2e-38 162.9 174 54.0
Sopen06g029540 Solanum pennellii HOM05D007459 ORTHO05D009234 3.7e-38 162.2 174 54.0
Nitab4.5_0002553g0080 Nicotiana tabacum HOM05D007459 ORTHO05D009234 6.3e-38 161.4 175 52.6
Psat5g291760 Pisum sativum HOM05D007459 ORTHO05D009234 1.8e-37 159.8 174 52.9
Glyma.13G346600 Glycine max HOM05D007459 ORTHO05D009234 2.4e-37 159.5 172 51.2
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 3.5e-36 155.6 147 55.1
HanXRQChr14g0433791 Helianthus annuus HOM05D007459 ORTHO05D009234 8.5e-35 151.0 174 50.6
Lsat_1_v5_gn_8_158021 Lactuca sativa HOM05D007459 ORTHO05D009234 1.1e-34 150.6 178 48.9
unitig_85.g27223 Utricularia gibba HOM05D007459 ORTHO05D009234 2.1e-33 146.4 175 46.3
Sc06g0007410 Simmondsia chinensis HOM05D007459 ORTHO05D009234 4.7e-33 145.2 173 48.0
Rhsim09G0013300 Rhododendron simsii HOM05D007459 ORTHO05D009234 1.2e-31 140.6 177 44.1
vmacro06567 Vaccinium macrocarpon HOM05D007459 ORTHO05D009234 1.5e-31 140.2 179 42.5
Duzib151G0582 Durio zibethinus HOM05D007459 ORTHO05D009234 9.8e-31 137.5 125 56.8
SGA_v2.0_scaffold25G10994 Striga asiatica HOM05D007459 ORTHO05D009234 1.3e-30 137.1 173 45.7
ClCG07G015090 Citrullus lanatus HOM05D007459 ORTHO05D009234 1.1e-29 134.0 174 44.3
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 1.4e-29 133.7 165 47.3
Migut.N03078 Erythranthe guttata HOM05D007459 ORTHO05D009234 1.2e-28 130.6 172 45.3
ATR0743G068 Amborella trichopoda HOM05D007459 ORTHO05D009234 5.9e-28 128.3 176 47.2
DCAR_028411 Daucus carota HOM05D007459 ORTHO05D009234 1.7e-27 126.7 170 43.5
HPP92_004524 Vanilla planifolia HOM05D007459 ORTHO05D009234 3.8e-27 125.6 172 43.6
EL10Ac3g06032 Beta vulgaris HOM05D007459 ORTHO05D009234 1.5e-26 123.6 173 43.9
Os04g0495300 Oryza sativa ssp. japonica HOM05D007459 ORTHO05D009234 9.5e-26 120.9 172 42.4
Eucgr.L02147 Eucalyptus grandis HOM05D007459 ORTHO05D009234 1.2e-25 120.6 155 46.5
AUR62002368 Chenopodium quinoa HOM05D007459 ORTHO05D009234 6.1e-25 118.2 172 39.5
Actinidia27099 Actinidia chinensis HOM05D007459 ORTHO05D009234 8.0e-25 117.9 146 43.8
AUR62023818 Chenopodium quinoa HOM05D007459 ORTHO05D009234 5.2e-24 115.2 172 40.1
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 2.0e-20 103.2 143 39.9
Ah.07g202500 Amaranthus hybridus HOM05D007459 ORTHO05D009234 5.9e-20 101.7 173 38.7
HPP92_004533 Vanilla planifolia HOM05D007459 ORTHO05D009234 3.8e-19 99.0 135 43.0
EL10Ac9g22812 Beta vulgaris HOM05D007459 ORTHO05D009234 1.2e-17 94.0 157 42.7
EL10Ac4g10228 Beta vulgaris HOM05D007459 ORTHO05D009234 2.0e-15 86.7 140 41.4
EL10Ac5g11171 Beta vulgaris HOM05D007459 ORTHO05D009234 2.9e-14 82.8 126 40.5
Pp3c3_12780 Physcomitrium patens HOM05D007459 ORTHO05D009234 3.9e-11 72.4 153 31.4
Pp3c17_9330 Physcomitrium patens HOM05D007459 ORTHO05D009234 5.6e-10 68.6 138 31.2
EL10Ac3g06136 Beta vulgaris HOM05D007459 ORTHO05D009234 9.5e-10 67.8 75 45.3
Mapoly0038s0008 Marchantia polymorpha HOM05D007459 ORTHO05D009234 1.2e-09 67.4 137 29.9
SEGI_40343 Sequoiadendron giganteum HOM05D007459 ORTHO05D009234 2.8e-09 66.2 135 31.1
EL10Ac6g13927 Beta vulgaris HOM05D000045 ORTHO05D010054 1.8e-08 63.5 69 49.3
ECA238G4467 Erigeron canadensis HOM05D007459 ORTHO05D009234 1.7e-06 57.0 75 42.7


User provided reference genes

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