Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1305 Acer truncatum HOM05D010298 ORTHO05D006336 3.5e-124 448.4 238 100.0
Atru.chr4.1303 Acer truncatum HOM05D010298 ORTHO05D012539 4.7e-60 235.3 158 86.1
Ciclev10023596m.g Citrus clementina HOM05D010635 ORTHO05D006336 6.0e-23 112.1 155 46.5
Ciclev10023402m.g Citrus clementina HOM05D007277 ORTHO05D006336 1.7e-22 110.5 163 44.2
Atru.chr9.1115 Acer truncatum HOM05D008181 ORTHO05D010459 4.8e-20 102.4 69 69.6
QL10p012835 Quercus lobata HOM05D007277 ORTHO05D006336 3.8e-17 92.8 145 44.1
Ciclev10023444m.g Citrus clementina HOM05D007277 ORTHO05D006336 5.4e-16 89.0 162 39.5
Atru.chr7.61 Acer truncatum HOM05D008181 ORTHO05D010459 3.5e-15 86.3 66 57.6
Atru.chr13.1945 Acer truncatum HOM05D008181 ORTHO05D000397 4.6e-15 85.9 69 56.5
QL10p051898 Quercus lobata HOM05D007277 ORTHO05D006336 6.0e-15 85.5 139 43.9
Ciclev10024327m.g Citrus clementina HOM05D007277 ORTHO05D006336 6.7e-14 82.0 93 51.6
QL07p042879 Quercus lobata HOM05D007277 ORTHO05D006336 1.1e-13 81.3 114 41.2
QL10p052020 Quercus lobata HOM05D007277 ORTHO05D006336 1.5e-13 80.9 124 45.2
Thecc.09G294000 Theobroma cacao HOM05D010298 ORTHO05D012539 1.3e-12 77.8 122 41.0
COL.COLO4_28375 Corchorus olitorius HOM05D010298 ORTHO05D012539 1.6e-12 77.4 138 38.4
Thecc.09G294100 Theobroma cacao HOM05D010298 ORTHO05D012539 1.6e-12 77.4 128 39.1
QL07p042995 Quercus lobata HOM05D007277 ORTHO05D006336 2.1e-12 77.0 99 46.5
Cfa002615 Carpinus fangiana HOM05D007277 ORTHO05D006336 2.8e-12 76.6 151 37.7
Haze_24862 Corylus avellana HOM05D007277 ORTHO05D006336 4.8e-12 75.9 158 36.1
Haze_27687 Corylus avellana HOM05D007277 ORTHO05D006336 1.4e-11 74.3 127 41.7
Haze_27688 Corylus avellana HOM05D007277 ORTHO05D006336 1.4e-11 74.3 127 41.7
Gohir.A09G086300 Gossypium hirsutum HOM05D010298 ORTHO05D012539 1.8e-11 73.9 136 38.2
Potri.017G021796 Populus trichocarpa HOM05D010635 ORTHO05D006336 1.8e-11 73.9 117 40.2
QL07p042928 Quercus lobata HOM05D007277 ORTHO05D006336 1.8e-11 73.9 99 47.5
Atru.chr9.2085 Acer truncatum HOM05D007277 ORTHO05D006336 4.0e-11 72.8 132 37.9
Potri.017G019932 Populus trichocarpa HOM05D010635 ORTHO05D006336 4.0e-11 72.8 144 37.5
Potri.017G022262 Populus trichocarpa HOM05D010635 ORTHO05D006336 4.0e-11 72.8 119 40.3
Ciclev10029817m.g Citrus clementina HOM05D007277 ORTHO05D006336 5.3e-11 72.4 149 35.6
Gohir.D09G086380 Gossypium hirsutum HOM05D010298 ORTHO05D012539 5.3e-11 72.4 136 39.7
Gohir.A09G091466 Gossypium hirsutum HOM05D010298 ORTHO05D012539 6.9e-11 72.0 173 34.1
Potri.017G019000 Populus trichocarpa HOM05D010635 ORTHO05D006336 6.9e-11 72.0 97 48.5
Atru.chr4.1329 Acer truncatum HOM05D010635 ORTHO05D006336 9.0e-11 71.6 60 70.0
Ciclev10024167m.g Citrus clementina HOM05D007277 ORTHO05D006336 1.2e-10 71.2 147 36.1
Gorai.006G102700 Gossypium raimondii HOM05D010298 ORTHO05D012539 1.2e-10 71.2 136 39.0
Gohir.D03G141000 Gossypium hirsutum HOM05D010298 ORTHO05D012539 2.0e-10 70.5 174 33.9
Gorai.003G147800 Gossypium raimondii HOM05D010298 ORTHO05D012539 2.0e-10 70.5 174 33.9
Gorai.006G107900 Gossypium raimondii HOM05D010298 ORTHO05D012539 2.0e-10 70.5 174 34.5
QL07p042903 Quercus lobata HOM05D007277 ORTHO05D006336 2.0e-10 70.5 99 47.5
Cfa002614 Carpinus fangiana HOM05D007277 ORTHO05D006336 3.4e-10 69.7 95 44.2
QL07p042983 Quercus lobata HOM05D007277 ORTHO05D006336 3.4e-10 69.7 155 36.8
Cpa.g.sc3.199 Carica papaya HOM05D007277 ORTHO05D006336 4.5e-10 69.3 100 47.0
Gohir.A03G027800 Gossypium hirsutum HOM05D010298 ORTHO05D012539 5.8e-10 68.9 174 33.3
Gohir.D09G091460 Gossypium hirsutum HOM05D010298 ORTHO05D012539 5.8e-10 68.9 136 38.2
Gorai.006G107800 Gossypium raimondii HOM05D010298 ORTHO05D012539 5.8e-10 68.9 136 38.2
Gohir.D09G091480 Gossypium hirsutum HOM05D010298 ORTHO05D012539 1.0e-09 68.2 173 32.9
Cpa.g.sc3.198 Carica papaya HOM05D007277 ORTHO05D006336 1.7e-09 67.4 103 43.7
Haze_24866 Corylus avellana HOM05D007277 ORTHO05D006336 1.7e-09 67.4 126 36.5
Cfa021203 Carpinus fangiana HOM05D007277 ORTHO05D006336 2.2e-09 67.0 150 34.7
Potri.017G018901 Populus trichocarpa HOM05D010635 ORTHO05D006336 2.2e-09 67.0 107 41.1
Sabra07G0120000 Salix brachista HOM05D010635 ORTHO05D006336 2.2e-09 67.0 139 36.7
Cpa.g.sc3.210 Carica papaya HOM05D007277 ORTHO05D006336 2.9e-09 66.6 103 43.7
QL07p042908 Quercus lobata HOM05D007277 ORTHO05D006336 4.9e-09 65.9 179 31.8
QL10p047937 Quercus lobata HOM05D007277 ORTHO05D006336 6.4e-09 65.5 119 37.8
QL11p034196 Quercus lobata HOM05D007277 ORTHO05D006336 8.4e-09 65.1 162 33.3
PGSC0003DMG400024676 Solanum tuberosum HOM05D007277 ORTHO05D006336 8.4e-09 65.1 140 35.0
Thecc.03G110900 Theobroma cacao HOM05D007277 ORTHO05D006336 1.1e-08 64.7 155 33.5
Sabra07G0119900 Salix brachista HOM05D010635 ORTHO05D006336 1.4e-08 64.3 190 33.7
Gohir.A03G027600 Gossypium hirsutum HOM05D010298 ORTHO05D012539 1.9e-08 63.9 142 34.5
Gohir.D09G086340 Gossypium hirsutum HOM05D010298 ORTHO05D012539 1.9e-08 63.9 156 33.3
Gorai.006G102600 Gossypium raimondii HOM05D010298 ORTHO05D012539 1.9e-08 63.9 155 33.5
Solyc03g114650.3 Solanum lycopersicum HOM05D007277 ORTHO05D006336 1.9e-08 63.9 162 32.7
Sabra07G0108200 Salix brachista HOM05D010635 ORTHO05D006336 2.5e-08 63.5 134 37.3
Sabra03G0023900 Salix brachista HOM05D010635 ORTHO05D006336 3.2e-08 63.2 137 32.8
Sopen03g033720 Solanum pennellii HOM05D007277 ORTHO05D006336 4.2e-08 62.8 168 31.5
Sabra07G0120400 Salix brachista HOM05D010635 ORTHO05D006336 5.5e-08 62.4 140 35.7
RcHm_v2.0_Chr7g0240781 Rosa chinensis HOM05D007277 ORTHO05D006336 7.1e-08 62.0 101 41.6
QL09p028728 Quercus lobata HOM05D007277 ORTHO05D006336 9.3e-08 61.6 179 31.3
Sabra07G0108100 Salix brachista HOM05D010635 ORTHO05D006336 9.3e-08 61.6 132 36.4
Sabra17G0002100 Salix brachista HOM05D010635 ORTHO05D006336 9.3e-08 61.6 129 34.1
Sabra17G0014600 Salix brachista HOM05D010635 ORTHO05D006336 1.6e-07 60.8 129 34.1
CSS0000915 Camellia sinensis var. sinensis HOM05D007277 ORTHO05D006336 2.1e-07 60.5 108 33.3
DCAR_010189 Daucus carota HOM05D007277 ORTHO05D006336 2.7e-07 60.1 110 38.2
Dinv38624 Davidia involucrata HOM05D007277 ORTHO05D006336 2.7e-07 60.1 99 37.4
Potri.007G133200 Populus trichocarpa HOM05D010635 ORTHO05D006336 3.5e-07 59.7 154 33.8
QL02p080510 Quercus lobata HOM05D007277 ORTHO05D006336 3.5e-07 59.7 139 34.5
QL07p042874 Quercus lobata HOM05D007277 ORTHO05D006336 4.6e-07 59.3 149 34.2
Actinidia22592 Actinidia chinensis HOM05D007277 ORTHO05D006336 6.0e-07 58.9 148 27.7
Dinv36831 Davidia involucrata HOM05D007277 ORTHO05D006336 6.0e-07 58.9 157 28.0
Manes.05G115300 Manihot esculenta HOM05D007277 ORTHO05D006336 7.9e-07 58.5 104 39.4
QL10p048111 Quercus lobata HOM05D010635 ORTHO05D006336 7.9e-07 58.5 108 36.1
Gohir.D09G091420 Gossypium hirsutum HOM05D010298 ORTHO05D012539 1.0e-06 58.2 129 37.2
PGSC0003DMG400024518 Solanum tuberosum HOM05D007277 ORTHO05D006336 1.0e-06 58.2 137 32.1
Cpa.g.sc3.209 Carica papaya HOM05D007277 ORTHO05D006336 1.3e-06 57.8 127 38.6
COL.COLO4_28373 Corchorus olitorius HOM05D010298 ORTHO05D012539 3.0e-06 56.6 107 40.2
RcHm_v2.0_Chr7g0241491 Rosa chinensis HOM05D007277 ORTHO05D006336 3.9e-06 56.2 141 31.9
FAN13G2869 Fragaria x ananassa HOM05D007277 ORTHO05D006336 6.7e-06 55.5 99 35.4
Actinidia10434 Actinidia chinensis HOM05D007277 ORTHO05D006336 8.7e-06 55.1 131 32.8
COL.COLO4_28831 Corchorus olitorius HOM05D007277 ORTHO05D006336 8.7e-06 55.1 141 34.0
Sabra07G0108000 Salix brachista HOM05D010635 ORTHO05D006336 8.7e-06 55.1 134 33.6


User provided reference genes

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