Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 4.2e-40 167.5 83 100.0
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 5.0e-17 90.9 92 57.6
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 3.5e-10 68.2 39 79.5
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.5e-10 68.2 39 79.5
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.5e-10 68.2 39 79.5
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 3.5e-10 68.2 39 79.5
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 5.9e-10 67.4 54 57.4
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 7.7e-10 67.0 39 76.9
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 7.7e-10 67.0 39 76.9
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 7.7e-10 67.0 39 76.9
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 1.0e-09 66.6 39 74.4
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 1.0e-09 66.6 39 74.4
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.3e-09 66.2 39 76.9
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.3e-09 66.2 39 76.9
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 1.7e-09 65.9 39 76.9
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.7e-09 65.9 39 76.9
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 2.2e-09 65.5 39 71.8
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 2.2e-09 65.5 39 74.4
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 2.2e-09 65.5 39 74.4
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 2.2e-09 65.5 39 74.4
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.2e-09 65.5 39 74.4
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 2.9e-09 65.1 39 71.8
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 2.9e-09 65.1 39 74.4
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.8e-09 64.7 39 74.4
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 3.8e-09 64.7 39 74.4
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 3.8e-09 64.7 39 74.4
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 3.8e-09 64.7 39 74.4
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 3.8e-09 64.7 39 74.4
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 3.8e-09 64.7 39 74.4
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.8e-09 64.7 39 74.4
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 3.8e-09 64.7 39 74.4
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 3.8e-09 64.7 39 74.4
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 3.8e-09 64.7 39 74.4
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 3.8e-09 64.7 39 74.4
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 3.8e-09 64.7 39 74.4
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 3.8e-09 64.7 39 74.4
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 3.8e-09 64.7 39 74.4
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 5.0e-09 64.3 39 71.8
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 5.0e-09 64.3 39 71.8
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 5.0e-09 64.3 39 71.8
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 5.0e-09 64.3 39 71.8
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 5.0e-09 64.3 39 71.8
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 5.0e-09 64.3 39 74.4
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 5.0e-09 64.3 39 71.8
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 5.0e-09 64.3 39 69.2
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 5.0e-09 64.3 39 71.8
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 5.0e-09 64.3 39 69.2
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 5.0e-09 64.3 39 71.8
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 5.0e-09 64.3 39 71.8
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 5.0e-09 64.3 39 71.8
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 5.0e-09 64.3 39 71.8
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 5.0e-09 64.3 39 71.8
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 5.0e-09 64.3 39 69.2
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 5.0e-09 64.3 37 78.4
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 6.5e-09 63.9 39 71.8
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 6.5e-09 63.9 39 71.8
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 6.5e-09 63.9 113 39.8
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 6.5e-09 63.9 39 74.4
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 8.5e-09 63.5 39 71.8
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 8.5e-09 63.5 39 71.8
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 8.5e-09 63.5 39 74.4
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 8.5e-09 63.5 39 71.8
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 1.1e-08 63.2 39 69.2
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 1.1e-08 63.2 39 69.2
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 1.1e-08 63.2 39 71.8
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 1.1e-08 63.2 39 69.2
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 1.1e-08 63.2 39 69.2
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 1.1e-08 63.2 39 69.2
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 1.1e-08 63.2 39 71.8
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 1.1e-08 63.2 39 69.2
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 1.1e-08 63.2 39 71.8
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.1e-08 63.2 39 71.8
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.1e-08 63.2 39 71.8
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.1e-08 63.2 39 69.2
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 1.1e-08 63.2 39 71.8
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 1.5e-08 62.8 39 69.2
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 1.5e-08 62.8 39 71.8
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 1.5e-08 62.8 39 71.8
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 1.5e-08 62.8 39 71.8
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.5e-08 62.8 39 71.8
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.5e-08 62.8 39 71.8
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 1.5e-08 62.8 39 69.2
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 1.5e-08 62.8 39 69.2
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 1.5e-08 62.8 37 75.7
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 1.5e-08 62.8 39 69.2
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 1.5e-08 62.8 39 69.2
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 1.5e-08 62.8 39 69.2
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 1.9e-08 62.4 38 71.1
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 1.9e-08 62.4 37 73.0
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.9e-08 62.4 39 71.8
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 1.9e-08 62.4 39 66.7
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 1.9e-08 62.4 39 71.8
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 2.5e-08 62.0 39 66.7
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 2.5e-08 62.0 39 66.7
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 2.5e-08 62.0 38 71.1
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 2.5e-08 62.0 39 69.2
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 2.5e-08 62.0 39 69.2
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 2.5e-08 62.0 48 62.5
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 3.2e-08 61.6 39 66.7
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 3.2e-08 61.6 39 66.7
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 3.2e-08 61.6 39 69.2
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 3.2e-08 61.6 39 66.7
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 3.2e-08 61.6 39 69.2
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 3.2e-08 61.6 39 69.2
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 4.2e-08 61.2 39 66.7
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 4.2e-08 61.2 39 66.7
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 5.5e-08 60.8 39 66.7
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 5.5e-08 60.8 39 66.7
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 7.2e-08 60.5 39 66.7
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 9.4e-08 60.1 39 69.2
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 9.4e-08 60.1 39 69.2
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 1.2e-07 59.7 39 64.1
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.2e-07 59.7 39 66.7
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 1.6e-07 59.3 39 66.7
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 1.6e-07 59.3 39 64.1
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 2.1e-07 58.9 39 64.1
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 2.1e-07 58.9 39 64.1
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 2.7e-07 58.5 39 61.5
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 3.6e-07 58.2 39 64.1
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 3.6e-07 58.2 39 64.1
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 3.6e-07 58.2 39 64.1
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 6.1e-07 57.4 39 59.0
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 8.0e-07 57.0 40 60.0
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 2.3e-06 55.5 39 59.0


User provided reference genes

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