Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 2.4e-113 412.1 207 100.0
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 4.2e-97 358.2 207 88.4
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 1.5e-83 313.2 207 75.8
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 4.5e-75 285.0 206 69.4
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 9.4e-73 277.3 206 69.4
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 2.0e-70 269.6 197 70.1
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 3.3e-70 268.9 206 66.0
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 5.7e-70 268.1 188 71.8
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 4.8e-69 265.0 203 68.0
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 6.3e-69 264.6 199 68.3
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 1.4e-68 263.5 188 70.2
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 4.5e-67 258.5 206 65.5
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 2.2e-66 256.1 206 66.0
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 5.0e-66 255.0 192 68.8
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 7.2e-65 251.1 206 61.7
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 9.4e-65 250.8 182 70.3
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 1.6e-64 250.0 188 68.1
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.1e-64 249.6 200 67.0
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 4.7e-64 248.4 182 67.0
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 8.0e-64 247.7 199 66.3
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 1.0e-63 247.3 210 59.0
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 1.4e-63 246.9 206 62.6
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 3.0e-63 245.7 204 63.2
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 5.2e-63 245.0 199 65.8
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 8.8e-63 244.2 200 65.5
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 1.5e-62 243.4 199 65.3
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 2.0e-62 243.0 199 66.3
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 2.6e-62 242.7 206 62.1
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 7.5e-62 241.1 173 68.2
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 1.3e-61 240.4 207 60.4
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 2.2e-61 239.6 282 48.9
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 4.8e-61 238.4 165 70.9
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 1.1e-60 237.3 203 63.1
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 3.1e-60 235.7 200 60.5
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 4.1e-60 235.3 201 60.2
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 7.0e-60 234.6 199 61.8
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 7.0e-60 234.6 199 63.3
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 1.6e-59 233.4 193 63.7
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 2.0e-59 233.0 191 64.9
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 2.7e-59 232.6 173 69.4
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 7.7e-59 231.1 207 59.4
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 1.0e-58 230.7 179 63.7
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 1.3e-58 230.3 176 65.3
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 1.3e-58 230.3 193 63.2
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 1.7e-58 229.9 191 61.3
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 2.2e-58 229.6 196 62.8
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 5.0e-58 228.4 156 73.1
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 5.0e-58 228.4 183 66.1
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 5.0e-58 228.4 199 60.3
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 8.5e-58 227.6 192 60.9
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 1.1e-57 227.3 206 58.7
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 1.9e-57 226.5 192 60.4
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 3.2e-57 225.7 207 57.5
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 4.2e-57 225.3 177 67.2
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 1.2e-56 223.8 197 57.4
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 3.6e-56 222.2 177 66.1
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 4.7e-56 221.9 203 58.6
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 6.1e-56 221.5 181 61.9
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.4e-55 220.3 195 59.0
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 1.8e-55 219.9 203 58.6
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 2.3e-55 219.5 147 76.2
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 5.2e-55 218.4 163 66.9
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 5.2e-55 218.4 209 56.5
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 8.8e-55 217.6 192 58.9
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 1.5e-54 216.9 218 56.4
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 1.5e-54 216.9 177 66.1
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 2.0e-54 216.5 192 59.9
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 2.0e-54 216.5 196 60.2
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 2.6e-54 216.1 206 56.8
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 3.4e-54 215.7 206 56.8
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 3.4e-54 215.7 178 63.5
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 5.7e-54 214.9 192 59.4
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 7.5e-54 214.5 162 66.0
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.3e-53 213.8 192 59.4
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 3.7e-53 212.2 170 61.8
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 3.7e-53 212.2 156 67.9
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 4.8e-53 211.8 197 58.4
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 4.8e-53 211.8 197 58.4
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 4.8e-53 211.8 197 58.4
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 4.8e-53 211.8 176 60.2
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 6.3e-53 211.5 185 61.1
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 8.3e-53 211.1 192 56.8
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 1.8e-52 209.9 193 58.5
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 9.1e-52 207.6 180 61.1
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 1.6e-51 206.8 180 62.2
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 1.0e-50 204.1 184 57.1
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 2.9e-50 202.6 160 63.8
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 2.9e-50 202.6 153 66.7
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 2.9e-50 202.6 193 53.9
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 2.9e-50 202.6 166 62.7
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 3.8e-50 202.2 180 58.9
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 2.5e-49 199.5 178 61.8
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.6e-48 196.8 151 64.2
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 5.2e-47 191.8 187 55.6
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 4.4e-46 188.7 206 52.9
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 8.3e-45 184.5 197 54.8
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 4.1e-44 182.2 160 57.5
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.7e-42 176.8 168 54.2
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 2.3e-42 176.4 119 68.9
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 3.3e-41 172.6 183 51.9
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.4e-39 167.2 177 52.0
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 2.3e-39 166.4 137 61.3
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 2.3e-39 166.4 197 47.7
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 4.0e-39 165.6 119 70.6
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 6.8e-39 164.9 144 61.1
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 1.2e-38 164.1 185 50.3
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 1.2e-38 164.1 179 50.8
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 1.2e-38 164.1 131 66.4
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 2.0e-38 163.3 146 60.3
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 3.4e-38 162.5 138 60.1
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 3.7e-37 159.1 193 46.6
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 4.6e-35 152.1 137 56.9
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 9.5e-33 144.4 133 61.7
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 4.7e-32 142.1 178 50.0
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 4.7e-32 142.1 178 50.0
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 6.2e-32 141.7 113 62.8
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 2.9e-29 132.9 145 53.1
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 3.7e-29 132.5 97 64.9
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 7.0e-28 128.3 154 49.4
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 1.7e-26 123.6 116 56.0
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 5.1e-26 122.1 119 53.8
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 8.1e-24 114.8 91 63.7
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 1.4e-23 114.0 193 39.9
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 2.2e-21 106.7 158 38.6
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 1.4e-20 104.0 98 55.1
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 2.8e-16 89.7 83 57.8
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 1.2e-14 84.3 73 56.2
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 7.6e-14 81.6 70 58.6
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 1.3e-10 70.9 65 53.8
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 3.0e-10 69.7 96 43.8
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 1.9e-09 67.0 179 35.8
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 5.6e-09 65.5 45 62.2
Sc09g0009520 Simmondsia chinensis HOM05D005768 ORTHO05D007100 7.3e-09 65.1 65 50.8
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-06 56.2 96 32.3


User provided reference genes

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