Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 6.6e-293 1010.0 519 100.0
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 1.8e-282 975.3 505 99.2
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 8.7e-176 620.9 541 62.3
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 7.4e-175 617.8 531 63.7
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 2.2e-171 606.3 543 62.1
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 5.5e-170 601.7 556 61.0
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 3.0e-168 595.9 542 61.4
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 4.8e-166 588.6 539 61.0
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 4.8e-166 588.6 548 61.9
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 8.1e-166 587.8 555 58.9
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 4.0e-165 585.5 549 59.9
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 9.0e-165 584.3 549 59.2
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 1.2e-164 583.9 543 59.1
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.0e-163 580.9 531 59.7
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.4e-162 577.0 531 59.5
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 2.5e-162 576.2 546 61.2
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 7.1e-162 574.7 541 60.3
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 7.9e-161 571.2 520 60.8
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 2.3e-160 569.7 545 60.6
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.9e-159 566.6 546 60.3
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 2.6e-156 556.2 549 58.1
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 5.9e-156 555.1 541 57.7
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 1.0e-155 554.3 536 57.8
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 2.9e-155 552.7 523 59.5
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 3.8e-155 552.4 525 58.7
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 1.2e-153 547.4 542 57.0
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 2.7e-153 546.2 545 55.8
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 3.5e-153 545.8 529 57.8
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 1.3e-152 543.9 543 56.4
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 3.9e-152 542.3 557 54.9
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 3.9e-152 542.3 545 55.4
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 3.9e-152 542.3 533 56.7
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.1e-151 540.8 544 56.8
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 1.1e-151 540.8 550 57.6
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 5.7e-151 538.5 557 54.6
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 1.3e-150 537.3 545 55.0
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 2.8e-150 536.2 542 55.7
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.8e-150 536.2 536 56.5
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 3.7e-150 535.8 536 56.3
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 4.8e-150 535.4 540 55.7
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 6.3e-150 535.0 547 55.6
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 4.1e-149 532.3 536 55.4
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 9.0e-149 531.2 525 57.5
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.5e-148 530.4 547 55.2
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 2.0e-148 530.0 537 55.1
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.8e-147 525.8 547 55.0
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 5.0e-147 525.4 564 54.8
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 8.5e-147 524.6 542 55.7
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.1e-145 520.0 544 54.6
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 2.7e-145 519.6 580 52.6
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 6.1e-145 518.5 548 55.1
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 2.5e-143 513.1 523 54.7
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 9.7e-143 511.1 524 56.3
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 1.3e-142 510.8 522 52.5
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 1.3e-142 510.8 543 54.9
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 2.0e-140 503.4 524 52.7
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 3.4e-140 502.7 532 54.3
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 5.9e-140 501.9 545 54.1
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 4.7e-137 492.3 548 51.6
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 5.1e-136 488.8 555 50.6
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 6.7e-136 488.4 540 52.4
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 1.5e-135 487.3 520 52.3
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 4.4e-135 485.7 538 52.4
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 7.4e-135 485.0 557 50.6
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.3e-134 484.2 561 48.5
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 2.2e-134 483.4 565 49.9
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 3.7e-134 482.6 524 52.3
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 1.8e-133 480.3 550 50.4
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 7.0e-133 478.4 551 49.9
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 1.2e-132 477.6 574 48.8
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 2.6e-132 476.5 557 49.0
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 3.5e-132 476.1 557 49.7
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 3.2e-130 469.5 530 51.3
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 7.2e-130 468.4 513 52.8
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 1.2e-129 467.6 529 50.3
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 1.6e-129 467.2 545 49.5
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 2.1e-129 466.8 540 49.6
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 2.7e-129 466.5 539 49.5
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 3.6e-129 466.1 525 51.6
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 4.7e-129 465.7 546 49.3
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 1.4e-128 464.2 545 49.0
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 1.8e-128 463.8 524 51.5
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 2.3e-128 463.4 489 53.2
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 1.1e-127 461.1 541 49.5
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 2.0e-127 460.3 541 49.4
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 5.7e-127 458.8 534 50.0
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 1.8e-125 453.8 556 48.6
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 5.9e-124 448.7 559 47.6
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 2.9e-123 446.4 540 49.3
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 5.0e-123 445.7 540 49.1
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 2.5e-122 443.4 500 52.0
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 1.6e-121 440.7 556 47.8
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 2.7e-121 439.9 559 47.4
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 8.0e-121 438.3 557 48.7
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 1.0e-120 438.0 572 47.4
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 9.8e-119 431.4 522 47.1
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 1.3e-118 431.0 530 47.4
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 6.3e-118 428.7 544 49.3
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 1.4e-117 427.6 521 50.9
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 9.1e-117 424.9 511 48.1
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 3.5e-116 422.9 578 46.4
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 8.5e-115 418.3 502 49.2
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 4.0e-112 409.5 540 48.3
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 4.0e-112 409.5 522 46.9
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 5.9e-108 395.6 419 57.0
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 3.8e-107 392.9 426 51.6
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 3.8e-107 392.9 499 46.3
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 1.6e-105 387.5 514 45.9
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 9.8e-103 378.3 506 44.1
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 2.9e-102 376.7 516 45.0
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 9.2e-101 371.7 459 46.0
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 6.4e-94 349.0 538 41.8
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 2.8e-89 333.6 557 39.9
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 8.9e-88 328.6 592 37.8
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 8.1e-81 305.4 338 51.2
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 1.5e-79 301.2 469 40.9
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 8.1e-73 278.9 472 36.7
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 2.5e-66 257.3 572 35.0
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.1e-64 251.9 570 34.0
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 2.4e-61 240.7 510 35.5
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 6.7e-59 232.6 420 37.1
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 2.8e-57 227.3 556 30.0
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.9e-53 214.5 458 34.1
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 7.4e-42 176.0 127 69.3
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 3.4e-39 167.2 96 77.1
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 8.5e-38 162.5 151 55.6
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 1.1e-37 162.2 168 56.0
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 9.3e-37 159.1 384 31.5
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 6.1e-36 156.4 279 36.2
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.3e-35 155.2 219 44.3
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 2.3e-35 154.5 326 34.0
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.2e-28 132.1 280 31.1
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.8e-27 128.3 150 47.3
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 9.7e-18 95.9 95 52.6
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 3.7e-17 94.0 242 36.0
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 3.0e-11 74.3 441 24.7
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 6.7e-11 73.2 81 49.4
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 5.7e-10 70.1 62 58.1
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 1.3e-09 68.9 263 31.2
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 4.1e-08 63.9 182 32.4
Nitab4.5_0004359g0020 Nicotiana tabacum HOM05D001439 ORTHO05D002726 1.3e-06 58.9 77 40.3
Nitab4.5_0001955g0100 Nicotiana tabacum HOM05D001439 ORTHO05D002726 2.9e-06 57.8 77 39.0
PSO339G1313 Papaver somniferum HOM05D001312 ORTHO05D001832 2.9e-06 57.8 171 28.1
SEGI_08770 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 3.8e-06 57.4 203 26.1
DCAR_006144 Daucus carota HOM05D001312 ORTHO05D001832 5.0e-06 57.0 160 28.1
Migut.D02327 Erythranthe guttata HOM05D001312 ORTHO05D001832 6.5e-06 56.6 252 27.0
PSO063G1518 Papaver somniferum HOM05D001312 ORTHO05D001832 6.5e-06 56.6 171 28.1
VMungo1080G0366 Vigna mungo HOM05D001312 ORTHO05D001832 6.5e-06 56.6 245 25.7
Actinidia06936 Actinidia chinensis HOM05D001312 ORTHO05D001832 8.5e-06 56.2 157 32.5
MD05G1310200 Malus domestica HOM05D001439 ORTHO05D002726 8.5e-06 56.2 277 29.2


User provided reference genes

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