Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1176 Acer truncatum HOM05D000003 ORTHO05D000006 1.3e-51 206.1 102 100.0
Atru.chr2.3432 Acer truncatum HOM05D000003 ORTHO05D000004 2.9e-14 82.0 60 60.0
Atru.chr1.2428 Acer truncatum HOM05D000003 ORTHO05D000004 4.1e-13 78.2 89 39.3
Atru.chr13.2319 Acer truncatum HOM05D000003 ORTHO05D000006 1.2e-12 76.6 80 46.2
Atru.chr4.172 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-12 76.6 76 48.7
Atru.chr11.294 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-12 75.9 61 50.8
Atru.chr5.1412 Acer truncatum HOM05D000003 ORTHO05D000004 4.6e-12 74.7 63 54.0
Atru.chr2.1761 Acer truncatum HOM05D000003 ORTHO05D000004 6.0e-12 74.3 80 46.2
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-11 73.2 80 43.8
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-11 73.2 80 42.5
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-11 72.8 80 45.0
Atru.chr2.451 Acer truncatum HOM05D000003 ORTHO05D000004 6.6e-11 70.9 63 49.2
Atru.chr1.1866 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-10 70.1 79 43.0
Atru.chr11.1463 Acer truncatum HOM05D000024 ORTHO05D000006 1.1e-10 70.1 80 43.8
Atru.chr1.1302 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-10 69.3 76 43.4
Atru.chr4.1075 Acer truncatum HOM05D000003 ORTHO05D000006 2.5e-10 68.9 63 46.0
Atru.chr2.1640 Acer truncatum HOM05D000003 ORTHO05D000004 4.3e-10 68.2 63 50.8
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 4.3e-10 68.2 63 50.8
Atru.chr4.1027 Acer truncatum HOM05D000003 ORTHO05D000006 5.6e-10 67.8 76 43.4
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 1.2e-09 66.6 63 46.0
Atru.chr8.1059 Acer truncatum HOM05D000024 ORTHO05D000006 1.2e-09 66.6 79 39.2
Atru.chr3.2907 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-09 66.2 63 49.2
Atru.chr13.2389 Acer truncatum HOM05D000024 ORTHO05D000006 2.1e-09 65.9 80 41.2
Atru.chr1.1904 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-09 65.5 80 42.5
Atru.chr11.756 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-09 65.5 63 42.9
Atru.chr2.1417 Acer truncatum HOM05D000003 ORTHO05D000006 2.8e-09 65.5 63 42.9
Atru.chr5.1274 Acer truncatum HOM05D000024 ORTHO05D000006 8.0e-09 63.9 63 46.0
Atru.chr6.1035 Acer truncatum HOM05D000024 ORTHO05D000006 1.4e-08 63.2 80 36.2
Atru.chr4.30 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-08 62.8 63 41.3
Atru.chr5.2547 Acer truncatum HOM05D000003 ORTHO05D000006 1.8e-08 62.8 63 44.4
Atru.chr4.1649 Acer truncatum HOM05D000003 ORTHO05D000006 2.3e-08 62.4 63 42.9
Atru.chr4.851 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-08 62.0 92 35.9
Atru.chr1.3365 Acer truncatum HOM05D000003 ORTHO05D000004 5.2e-08 61.2 80 38.8
Atru.chr3.3509 Acer truncatum HOM05D000003 ORTHO05D000006 5.2e-08 61.2 63 38.1
Atru.chr9.1215 Acer truncatum HOM05D000003 ORTHO05D000006 5.2e-08 61.2 92 33.7
Sabra15G0091800 Salix brachista HOM05D000003 ORTHO05D000007 5.2e-08 61.2 65 47.7
Atru.chr1.776 Acer truncatum HOM05D000003 ORTHO05D000004 6.8e-08 60.8 63 38.1
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 8.9e-08 60.5 80 38.8
Sabra08G0134900 Salix brachista HOM05D000003 ORTHO05D000006 8.9e-08 60.5 65 44.6
Atru.chr4.1864 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-07 60.1 80 38.8
Atru.chr5.349 Acer truncatum HOM05D000003 ORTHO05D000006 2.0e-07 59.3 63 41.3
Atru.chr7.713 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-07 59.3 74 35.1
Atru.chr2.669 Acer truncatum HOM05D000003 ORTHO05D000004 2.6e-07 58.9 80 38.8
FvH4_6g27602 Fragaria vesca HOM05D000003 ORTHO05D000006 2.6e-07 58.9 62 38.7
RcHm_v2.0_Chr2g0146151 Rosa chinensis HOM05D000003 ORTHO05D000006 2.6e-07 58.9 63 41.3
Atru.chr6.586 Acer truncatum HOM05D000003 ORTHO05D000006 3.4e-07 58.5 63 38.1
RcHm_v2.0_Chr5g0053531 Rosa chinensis HOM05D000003 ORTHO05D000004 4.4e-07 58.2 62 40.3
COL.COLO4_06921 Corchorus olitorius HOM05D000003 ORTHO05D000006 7.5e-07 57.4 63 41.3
FvH4_2g12222 Fragaria vesca HOM05D000003 ORTHO05D000006 7.5e-07 57.4 60 41.7
Atru.chr5.3511 Acer truncatum HOM05D000003 ORTHO05D000006 9.8e-07 57.0 63 41.3
RcHm_v2.0_Chr1g0342601 Rosa chinensis HOM05D000003 ORTHO05D000006 9.8e-07 57.0 62 38.7
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 1.3e-06 56.6 62 40.3
Sabra02G0135700 Salix brachista HOM05D000003 ORTHO05D000006 2.2e-06 55.8 56 48.2
TPR.G22879 Trifolium pratense HOM05D000024 ORTHO05D000006 2.9e-06 55.5 85 35.3
FvH4_5g28072 Fragaria vesca HOM05D000003 ORTHO05D000006 4.9e-06 54.7 62 38.7
Manes.16G093425 Manihot esculenta HOM05D000024 ORTHO05D000006 4.9e-06 54.7 57 43.9
Atru.chr5.2276 Acer truncatum HOM05D000003 ORTHO05D000004 6.4e-06 54.3 48 47.9
Gohir.A01G127601 Gossypium hirsutum HOM05D020006 ORTHO05D018001 6.4e-06 54.3 79 34.2
Atru.chr3.1522 Acer truncatum HOM05D000003 ORTHO05D000006 8.3e-06 53.9 74 33.8
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 8.3e-06 53.9 60 46.7
CAN.G108.54 Capsicum annuum HOM05D000003 ORTHO05D000006 8.3e-06 53.9 71 36.6
FvH4_5g28591 Fragaria vesca HOM05D000003 ORTHO05D000006 8.3e-06 53.9 62 37.1
FvH4_6g18163 Fragaria vesca HOM05D000003 ORTHO05D000006 8.3e-06 53.9 66 36.4


User provided reference genes

Program Settings