Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 0.0e+00 1338.2 683 100.0
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 1.8e-282 975.7 505 99.2
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 1.2e-260 903.3 712 67.0
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 2.0e-257 892.5 722 65.2
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 3.7e-251 871.7 722 65.1
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 8.6e-248 860.5 724 64.4
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 3.0e-245 852.0 729 64.2
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 4.1e-242 841.6 730 62.3
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 1.2e-241 840.1 722 63.0
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 2.7e-241 839.0 720 62.5
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 6.6e-240 834.3 724 63.0
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 1.8e-237 826.2 735 61.1
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 2.0e-236 822.8 718 62.1
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 2.2e-235 819.3 723 62.0
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 6.4e-235 817.8 724 61.9
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 8.3e-235 817.4 712 61.0
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.2e-233 813.5 712 60.8
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 3.5e-233 812.0 701 62.9
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 4.0e-229 798.5 723 59.9
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 2.2e-227 792.7 730 60.1
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 7.1e-226 787.7 718 59.6
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 1.6e-225 786.6 723 59.1
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 2.1e-225 786.2 720 58.6
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 1.5e-223 780.0 720 58.3
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 9.5e-223 777.3 724 58.3
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.6e-222 776.5 724 58.4
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 1.4e-221 773.5 722 58.3
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 1.4e-221 773.5 704 59.4
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 1.8e-221 773.1 721 58.1
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 1.8e-221 773.1 706 59.3
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 2.0e-220 769.6 721 57.8
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 1.7e-219 766.5 712 58.3
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 6.4e-219 764.6 710 58.7
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 1.1e-218 763.8 712 57.6
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 4.1e-218 761.9 724 56.9
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 1.6e-217 760.0 706 58.8
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 2.1e-217 759.6 717 56.9
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 6.0e-217 758.1 723 57.8
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.5e-215 752.7 701 58.5
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 5.6e-215 751.5 712 57.7
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 9.6e-215 750.7 729 57.1
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 1.6e-214 750.0 731 56.5
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 8.1e-214 747.7 724 57.5
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 1.8e-213 746.5 718 58.2
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 5.2e-213 745.0 712 57.3
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.7e-211 740.0 712 57.2
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 6.4e-211 738.0 726 56.6
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 8.4e-211 737.6 709 57.1
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 3.5e-209 732.3 689 55.9
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 1.3e-208 730.3 759 54.4
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 3.0e-208 729.2 713 56.2
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 3.6e-206 722.2 719 55.6
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 4.8e-206 721.8 734 54.4
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 2.0e-204 716.5 698 55.6
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 5.8e-204 714.9 689 54.4
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 9.9e-204 714.1 729 54.3
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 5.4e-202 708.4 736 53.0
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 2.7e-201 706.1 706 55.8
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 6.0e-201 704.9 730 53.4
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 1.3e-200 703.7 703 55.5
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 2.3e-200 703.0 694 55.0
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 1.1e-199 700.7 722 53.7
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 1.5e-199 700.3 685 54.2
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 2.1e-198 696.4 634 60.1
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 2.1e-198 696.4 731 53.1
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 2.8e-198 696.0 726 51.1
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 4.8e-198 695.3 739 52.8
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 6.2e-198 694.9 689 54.9
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 1.1e-197 694.1 726 53.3
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 2.4e-197 693.0 725 53.4
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 2.4e-197 693.0 636 59.0
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 9.0e-197 691.0 725 53.1
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 9.0e-197 691.0 729 52.5
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 1.5e-196 690.3 713 54.0
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 2.6e-196 689.5 711 53.3
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 4.5e-196 688.7 770 50.9
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 7.6e-196 688.0 731 52.5
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 1.3e-195 687.2 720 53.1
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 1.7e-195 686.8 697 53.8
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 3.2e-194 682.6 720 52.8
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 4.2e-194 682.2 670 54.9
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.6e-193 680.2 681 54.8
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 1.9e-191 673.3 730 50.8
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 2.5e-191 672.9 753 51.0
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 3.3e-191 672.5 689 53.6
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 3.3e-191 672.5 719 52.9
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 2.8e-190 669.5 730 51.9
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 4.8e-190 668.7 719 52.4
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 1.8e-189 666.8 702 54.4
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 4.5e-188 662.1 733 51.0
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 2.5e-186 656.4 730 51.4
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 2.1e-185 653.3 726 52.1
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 1.1e-183 647.5 733 50.6
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 1.1e-181 641.0 725 51.3
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 2.4e-181 639.8 624 55.8
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 3.4e-180 636.0 637 55.7
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 7.6e-180 634.8 692 50.6
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 2.2e-179 633.3 747 50.1
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 8.5e-179 631.3 600 58.7
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 3.6e-177 625.9 698 50.1
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 1.3e-176 624.0 703 48.8
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 2.5e-175 619.8 670 51.8
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 3.1e-173 612.8 607 53.7
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 6.5e-171 605.1 703 48.1
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 2.1e-169 600.1 609 56.2
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 9.7e-167 591.3 802 46.4
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 1.3e-166 590.9 697 48.2
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 3.4e-164 582.8 667 48.4
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 1.6e-161 573.9 637 48.8
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 1.8e-160 570.5 682 48.2
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 4.4e-159 565.8 687 46.1
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.2e-148 531.2 517 55.7
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 1.6e-148 530.8 770 42.6
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 5.5e-138 495.7 682 44.4
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 1.0e-131 474.9 637 43.6
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 1.1e-125 454.9 814 36.0
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 8.6e-123 445.3 691 41.0
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 3.1e-120 436.8 729 39.8
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 3.4e-119 433.3 754 39.1
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.6e-116 424.5 752 37.6
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.1e-93 348.6 850 30.9
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 1.1e-88 332.0 566 36.6
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 9.0e-88 328.9 508 39.6
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.8e-73 280.0 461 36.2
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 1.2e-63 248.8 652 29.1
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.1e-58 232.3 420 37.1
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.6e-50 204.5 222 46.4
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 4.8e-49 200.3 206 52.4
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 9.7e-42 176.0 127 69.3
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 1.3e-38 165.6 96 76.0
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 2.9e-38 164.5 98 80.6
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 3.8e-38 164.1 151 56.3
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 1.5e-37 162.2 168 56.0
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 1.0e-35 156.0 279 36.2
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 5.2e-35 153.7 219 43.8
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 6.3e-33 146.7 95 69.5
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 1.3e-30 139.0 139 51.1
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 6.8e-27 126.7 150 47.3
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 1.7e-17 95.5 242 36.4
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 1.7e-17 95.5 95 52.6
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 4.9e-17 94.0 74 60.8
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 2.3e-11 75.1 440 25.5
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 1.3e-09 69.3 263 31.2
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 5.4e-08 63.9 182 32.4
Nitab4.5_0004359g0020 Nicotiana tabacum HOM05D001439 ORTHO05D002726 2.3e-06 58.5 77 40.3
Nitab4.5_0001955g0100 Nicotiana tabacum HOM05D001439 ORTHO05D002726 5.0e-06 57.4 77 39.0
PSO339G1313 Papaver somniferum HOM05D001312 ORTHO05D001832 8.6e-06 56.6 171 27.5


User provided reference genes

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