Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 2.4e-63 246.5 283 100.0
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 9.6e-28 128.3 195 60.5
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 1.8e-26 124.0 194 55.7
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 3.4e-25 119.8 194 57.2
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 1.2e-22 111.3 193 58.5
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.6e-22 110.9 194 54.1
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 6.0e-22 109.0 194 55.2
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.8e-21 107.5 194 62.9
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.8e-21 107.5 194 54.1
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 2.3e-21 107.1 71 80.3
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.5e-20 104.4 207 54.6
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.9e-20 104.0 198 55.1
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 3.3e-20 103.2 194 55.2
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 5.7e-20 102.4 70 78.6
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 9.7e-20 101.7 204 51.5
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.2e-19 100.5 194 55.7
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 4.8e-19 99.4 66 80.3
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 6.3e-19 99.0 194 54.1
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 2.4e-18 97.1 194 53.6
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 6.9e-18 95.5 115 56.5
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 9.0e-18 95.1 70 70.0
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.5e-17 94.4 195 53.8
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 2.0e-17 94.0 70 74.3
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 2.6e-17 93.6 195 55.9
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.5e-17 92.8 194 51.5
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 5.9e-17 92.4 104 55.8
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 1.7e-16 90.9 194 53.6
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.2e-16 90.5 194 51.0
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 2.9e-16 90.1 70 71.4
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 2.9e-16 90.1 70 68.6
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 3.8e-16 89.7 197 41.1
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 5.0e-16 89.4 196 56.6
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 6.5e-16 89.0 68 72.1
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 8.5e-16 88.6 194 52.6
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 1.4e-15 87.8 194 50.0
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 1.9e-15 87.4 197 59.4
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 2.5e-15 87.0 194 50.5
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 3.2e-15 86.7 70 67.1
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 4.2e-15 86.3 196 50.5
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 5.5e-15 85.9 196 51.5
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 5.5e-15 85.9 70 67.1
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 7.2e-15 85.5 70 67.1
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 7.2e-15 85.5 70 68.6
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 9.4e-15 85.1 194 47.9
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 9.4e-15 85.1 116 47.4
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 1.2e-14 84.7 64 71.9
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.6e-14 84.3 194 51.0
Psat5g058160 Pisum sativum HOM05D003347 ORTHO05D003821 2.7e-14 83.6 71 63.4
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 2.7e-14 83.6 70 68.6
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 3.6e-14 83.2 67 65.7
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 4.6e-14 82.8 194 51.5
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 4.6e-14 82.8 70 64.3
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 4.6e-14 82.8 70 64.3
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 6.1e-14 82.4 194 53.6
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.0e-13 81.6 194 49.5
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 1.0e-13 81.6 197 50.8
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 1.4e-13 81.3 114 46.5
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.4e-13 81.3 70 62.9
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.8e-13 80.9 187 56.7
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 2.3e-13 80.5 68 69.1
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 3.0e-13 80.1 192 58.3
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 5.1e-13 79.3 115 53.0
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 5.1e-13 79.3 206 49.5
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 6.7e-13 79.0 196 49.0
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 1.5e-12 77.8 198 51.0
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 1.5e-12 77.8 70 58.6
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 1.5e-12 77.8 70 58.6
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 1.5e-12 77.8 70 60.0
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 2.0e-12 77.4 196 48.0
EL10Ac4g09689 Beta vulgaris HOM05D003347 ORTHO05D003821 2.0e-12 77.4 69 59.4
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 2.0e-12 77.4 153 55.6
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 3.3e-12 76.6 69 59.4
Psat5g058080 Pisum sativum HOM05D003347 ORTHO05D003821 5.7e-12 75.9 69 60.9
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 5.7e-12 75.9 69 56.5
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 7.4e-12 75.5 194 49.0
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 9.7e-12 75.1 210 45.7
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.3e-11 74.7 114 43.0
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 1.3e-11 74.7 194 47.4
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 1.7e-11 74.3 205 50.7
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 2.2e-11 73.9 68 60.3
Potri.001G211000 Populus trichocarpa HOM05D003347 ORTHO05D003821 2.8e-11 73.6 180 52.8
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 2.8e-11 73.6 70 55.7
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 4.8e-11 72.8 70 57.1
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 6.3e-11 72.4 56 67.9
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 1.1e-10 71.6 70 61.4
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.4e-10 71.2 70 54.3
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 1.8e-10 70.9 194 51.0
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 1.8e-10 70.9 63 63.5
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 2.4e-10 70.5 115 44.3
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.1e-10 69.7 194 46.4
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.1e-10 69.7 115 48.7
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 4.1e-10 69.7 111 50.5
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.2e-09 68.2 70 55.7
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 1.5e-09 67.8 71 56.3
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 2.0e-09 67.4 70 55.7
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 2.6e-09 67.0 210 45.7
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 2.6e-09 67.0 116 41.4
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 3.4e-09 66.6 71 57.7
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 7.7e-09 65.5 111 41.4
CAN.G1577.23 Capsicum annuum HOM05D003347 ORTHO05D003821 1.0e-08 65.1 213 40.8
FAN19G3034 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.0e-08 65.1 51 70.6
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 1.0e-08 65.1 196 45.9
arahy.Tifrunner.gnm1.ann1.X7GISI Arachis hypogaea HOM05D003347 ORTHO05D003821 1.3e-08 64.7 70 57.1
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 1.3e-08 64.7 113 42.5
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 1.7e-08 64.3 197 44.7
Sabra19G0015000 Salix brachista HOM05D003347 ORTHO05D003821 2.2e-08 63.9 51 64.7
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 2.9e-08 63.5 184 48.9
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 3.8e-08 63.2 70 52.9
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 5.0e-08 62.8 70 52.9
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 5.0e-08 62.8 70 51.4
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 8.5e-08 62.0 194 52.6
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 8.5e-08 62.0 45 71.1
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 1.1e-07 61.6 44 68.2
Pp3c15_6590 Physcomitrium patens HOM05D003347 ORTHO05D003821 1.4e-07 61.2 60 53.3
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 1.9e-07 60.8 45 68.9
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.5e-07 60.5 70 51.4
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 3.2e-07 60.1 70 51.4
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 5.5e-07 59.3 68 52.9
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 9.4e-07 58.5 149 49.0
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 9.4e-07 58.5 41 73.2
vmacro12779 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 9.4e-07 58.5 98 61.2
CARHR200100 Cardamine hirsuta HOM05D012923 ORTHO05D014747 1.2e-06 58.2 55 56.4
ECA248G0339 Erigeron canadensis HOM05D003347 ORTHO05D003821 1.2e-06 58.2 45 64.4
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 1.2e-06 58.2 94 50.0
Mapoly0020s0030 Marchantia polymorpha HOM05D003347 ORTHO05D003821 1.6e-06 57.8 51 64.7
Nitab4.5_0003344g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.6e-06 57.8 44 65.9
Sopen05g034850 Solanum pennellii HOM05D003347 ORTHO05D003821 1.6e-06 57.8 204 45.6
BcaC05g24971 Brassica carinata HOM05D003347 ORTHO05D003821 2.1e-06 57.4 70 45.7
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 2.1e-06 57.4 45 64.4
MELO3C023199.2 Cucumis melo HOM05D003347 ORTHO05D003821 2.7e-06 57.0 44 68.2
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 3.6e-06 56.6 115 45.2
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 3.6e-06 56.6 134 53.7
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 4.7e-06 56.2 70 45.7
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 7.9e-06 55.5 196 44.4


User provided reference genes

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