Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1049 Acer truncatum HOM05D006516 ORTHO05D008083 1.1e-170 603.2 317 100.0
Ciclev10001875m.g Citrus clementina HOM05D006516 ORTHO05D008083 5.2e-115 418.3 335 70.1
RcHm_v2.0_Chr2g0122781 Rosa chinensis HOM05D006516 ORTHO05D008083 2.9e-113 412.5 331 70.4
Thecc.01G139400 Theobroma cacao HOM05D006516 ORTHO05D008083 6.0e-111 404.8 333 67.9
Sabra07G0082800 Salix brachista HOM05D006516 ORTHO05D008083 1.0e-110 404.1 346 64.2
Prupe.4G278200 Prunus persica HOM05D006516 ORTHO05D008083 3.9e-110 402.1 339 67.3
Potri.007G099900 Populus trichocarpa HOM05D006516 ORTHO05D008083 2.5e-109 399.4 326 68.1
CANSAT01G0949 Cannabis sativa HOM05D006516 ORTHO05D008083 3.3e-109 399.1 293 74.1
MD00G1064700 Malus domestica HOM05D006516 ORTHO05D008083 7.3e-109 397.9 339 67.8
Solyc04g015480.3 Solanum lycopersicum HOM05D006516 ORTHO05D008083 4.7e-108 395.2 318 67.9
Manes.12G147400 Manihot esculenta HOM05D006516 ORTHO05D008083 1.1e-107 394.0 336 67.9
CSS0037144 Camellia sinensis var. sinensis HOM05D006516 ORTHO05D008083 1.8e-107 393.3 283 72.4
Dinv30343 Davidia involucrata HOM05D006516 ORTHO05D008083 4.0e-107 392.1 242 82.6
Cpa.g.sc37.17 Carica papaya HOM05D006516 ORTHO05D008083 5.2e-107 391.7 345 65.8
Sopen04g007550 Solanum pennellii HOM05D006516 ORTHO05D008083 1.5e-106 390.2 269 74.7
Gohir.D04G033500 Gossypium hirsutum HOM05D006516 ORTHO05D008083 4.4e-106 388.7 337 66.8
PGR119G1413 Punica granatum HOM05D006516 ORTHO05D008083 4.4e-106 388.7 331 66.2
AT4G33480 Arabidopsis thaliana HOM05D006516 ORTHO05D008083 5.8e-106 388.3 335 63.9
Eucgr.I00111 Eucalyptus grandis HOM05D006516 ORTHO05D008083 7.6e-106 387.9 326 65.3
FAN26G1784 Fragaria x ananassa HOM05D006516 ORTHO05D008083 2.9e-105 386.0 236 80.5
Gohir.A05G381800 Gossypium hirsutum HOM05D006516 ORTHO05D008083 6.4e-105 384.8 337 66.2
CiPaw.03G117200 Carya illinoinensis HOM05D006516 ORTHO05D008083 8.4e-105 384.4 315 72.4
TAR628G0816 Trochodendron aralioides HOM05D006516 ORTHO05D008083 1.1e-104 384.0 295 70.5
AL7G18070 Arabidopsis lyrata HOM05D006516 ORTHO05D008083 1.4e-104 383.6 340 64.1
CARHR241560 Cardamine hirsuta HOM05D006516 ORTHO05D008083 3.2e-104 382.5 338 64.5
FAN28G2638 Fragaria x ananassa HOM05D006516 ORTHO05D008083 3.2e-104 382.5 236 79.7
Oeu011021.1 Olea europaea HOM05D006516 ORTHO05D008083 3.2e-104 382.5 324 64.8
CsaV3_2G019760 Cucumis sativus L. HOM05D006516 ORTHO05D008083 1.6e-103 380.2 329 66.9
THA.LOC104804401 Tarenaya hassleriana HOM05D006516 ORTHO05D008083 1.6e-103 380.2 244 78.7
BcaC09g52164 Brassica carinata HOM05D006516 ORTHO05D008083 2.7e-103 379.4 322 66.1
Carub.0007s0699 Capsella rubella HOM05D006516 ORTHO05D008083 2.7e-103 379.4 336 63.4
TWI31G0808 Tripterygium wilfordii HOM05D006516 ORTHO05D008083 3.5e-103 379.0 302 68.9
Sed0013830 Sechium edule HOM05D006516 ORTHO05D008083 4.6e-103 378.6 224 83.9
C01p05200 Brassica napus HOM05D006516 ORTHO05D008083 6.0e-103 378.3 323 61.9
MELO3C023197.2 Cucumis melo HOM05D006516 ORTHO05D008083 6.0e-103 378.3 329 66.9
BraA01t00462Z Brassica rapa HOM05D006516 ORTHO05D008083 1.6e-100 370.2 236 76.7
Lsat_1_v5_gn_5_69121 Lactuca sativa HOM05D006516 ORTHO05D008083 2.8e-100 369.4 216 82.9
A01p04790 Brassica napus HOM05D006516 ORTHO05D008083 6.2e-100 368.2 236 77.1
HanXRQChr15g0469261 Helianthus annuus HOM05D006516 ORTHO05D008083 1.1e-99 367.5 333 62.8
ECA233G3512 Erigeron canadensis HOM05D000595 ORTHO05D006275 4.0e-99 365.5 328 61.6
EL10Ac4g09645 Beta vulgaris HOM05D006516 ORTHO05D008083 6.9e-99 364.8 245 72.2
AUR62000533 Chenopodium quinoa HOM05D006516 ORTHO05D008083 8.9e-99 364.4 242 74.8
MSTRG.23495 Avicennia marina HOM05D006516 ORTHO05D008083 1.2e-98 364.0 223 78.9
Sc06g0006730 Simmondsia chinensis HOM05D006516 ORTHO05D008083 1.5e-98 363.6 241 73.9
FAN23G2617 Fragaria x ananassa HOM05D006516 ORTHO05D008083 5.8e-98 361.7 234 77.8
FAN19G1952 Fragaria x ananassa HOM05D006516 ORTHO05D008083 1.3e-97 360.5 333 63.4
Migut.H00817 Erythranthe guttata HOM05D006516 ORTHO05D008083 1.7e-97 360.1 234 76.5
PSO170G3530 Papaver somniferum HOM05D006516 ORTHO05D008083 6.4e-97 358.2 233 76.4
BolC1t00500H Brassica oleracea HOM05D006516 ORTHO05D008021 1.6e-95 353.6 309 60.2
QL10p040847 Quercus lobata HOM05D006516 ORTHO05D008083 4.6e-95 352.1 292 69.5
Cfa002190 Carpinus fangiana HOM05D006516 ORTHO05D008083 7.8e-95 351.3 406 55.7
CDE08G1595 Ceratophyllum demersum HOM05D006516 ORTHO05D008083 2.3e-94 349.7 263 65.8
Haze_25362 Corylus avellana HOM05D006516 ORTHO05D008083 3.0e-94 349.4 288 70.5
Aqoxy6G00267 Aquilegia oxysepala HOM05D006516 ORTHO05D008083 6.6e-94 348.2 228 74.1
DCAR_019988 Daucus carota HOM05D006516 ORTHO05D008083 1.9e-93 346.7 325 58.2
Cc02_g33920 Coffea canephora HOM05D006516 ORTHO05D008083 2.5e-93 346.3 202 83.2
Duzib147G1587 Durio zibethinus HOM05D006516 ORTHO05D008083 4.3e-93 345.5 340 60.3
Nitab4.5_0001663g0100 Nicotiana tabacum HOM05D006516 ORTHO05D008083 1.3e-92 344.0 344 58.1
Glyma.05G194700 Glycine max HOM05D006516 ORTHO05D008083 1.6e-92 343.6 303 62.7
Actinidia06588 Actinidia chinensis HOM05D006516 ORTHO05D008083 3.1e-91 339.3 297 65.3
Actinidia20043 Actinidia chinensis HOM05D006516 ORTHO05D008083 1.5e-90 337.0 293 65.2
GSVIVG01022337001 Vitis vinifera HOM05D006516 ORTHO05D008083 6.4e-89 331.6 196 84.2
Gorai.012G037800 Gossypium raimondii HOM05D006516 ORTHO05D008083 8.4e-89 331.3 302 63.9
Lj4g0011477 Lotus japonicus HOM05D006516 ORTHO05D008083 1.4e-88 330.5 307 59.6
arahy.Tifrunner.gnm1.ann1.YP7URC Arachis hypogaea HOM05D006516 ORTHO05D008083 4.2e-88 328.9 207 75.8
unitig_899.g15157 Utricularia gibba HOM05D006516 ORTHO05D008083 4.2e-88 328.9 314 58.0
SGA_v2.0_scaffold54G19604 Striga asiatica HOM05D006516 ORTHO05D008083 5.4e-88 328.6 211 73.9
PGSC0003DMG400027234 Solanum tuberosum HOM05D006516 ORTHO05D008083 7.1e-88 328.2 350 54.0
COL.COLO4_12072 Corchorus olitorius HOM05D006516 ORTHO05D008083 2.1e-87 326.6 339 54.6
Thhalv10025682m.g Eutrema salsugineum HOM05D006516 ORTHO05D008083 3.5e-87 325.9 299 60.9
Lalb_Chr13g0296721 Lupinus albus HOM05D006516 ORTHO05D008083 1.3e-86 323.9 238 69.7
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 1.9e-85 320.1 305 56.7
CAN.G676.43 Capsicum annuum HOM05D006516 ORTHO05D008083 1.9e-85 320.1 235 70.6
arahy.Tifrunner.gnm1.ann1.8KJ0MH Arachis hypogaea HOM05D006516 ORTHO05D008083 1.3e-84 317.4 196 76.5
PSO528G0185 Papaver somniferum HOM05D006516 ORTHO05D008083 1.3e-84 317.4 194 79.9
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 6.2e-84 315.1 195 77.9
Hund07224 Selenicereus undatus HOM05D006516 ORTHO05D008083 1.4e-83 313.9 304 55.6
FvH4_1g25120 Fragaria vesca HOM05D006516 ORTHO05D008083 2.4e-83 313.2 287 63.8
PSO063G7430 Papaver somniferum HOM05D006516 ORTHO05D008083 3.1e-83 312.8 194 78.9
Lalb_Chr08g0238111 Lupinus albus HOM05D006516 ORTHO05D008083 1.5e-82 310.5 330 55.5
Lj1g0010918 Lotus japonicus HOM05D006516 ORTHO05D008083 1.1e-80 304.3 213 72.8
AUR62006880 Chenopodium quinoa HOM05D006516 ORTHO05D008083 7.1e-80 301.6 333 51.1
arahy.Tifrunner.gnm1.ann1.I5MJF2 Arachis hypogaea HOM05D006516 ORTHO05D008083 1.6e-79 300.4 213 70.0
Medtr8g094200 Medicago truncatula HOM05D006516 ORTHO05D008083 2.1e-79 300.1 301 54.5
Glyma.06G156800 Glycine max HOM05D006516 ORTHO05D008083 3.5e-79 299.3 214 73.4
Psat5g086920 Pisum sativum HOM05D006516 ORTHO05D008083 5.6e-77 292.0 218 67.4
arahy.Tifrunner.gnm1.ann1.5F6SWA Arachis hypogaea HOM05D006516 ORTHO05D008083 3.7e-76 289.3 227 66.1
VMungo1309G1214 Vigna mungo HOM05D006516 ORTHO05D008083 4.8e-76 288.9 214 70.6
Ca_17618_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 3.1e-75 286.2 202 67.3
Zm00001eb434490 Zea mays HOM05D006516 ORTHO05D008083 5.3e-75 285.4 241 59.8
TPR.G37339 Trifolium pratense HOM05D006516 ORTHO05D008083 2.7e-71 273.1 280 53.6
CiPaw.04G078600 Carya illinoinensis HOM05D006516 ORTHO05D008083 8.2e-68 261.5 326 53.1
Psat7g044240 Pisum sativum HOM05D006516 ORTHO05D008083 1.1e-67 261.2 299 49.8
Ca_16991_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 1.4e-67 260.8 267 55.1
Ca_17019_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 1.4e-67 260.8 267 55.1
Medtr3g096860 Medicago truncatula HOM05D006516 ORTHO05D008083 2.9e-65 253.1 203 63.1
Phvul.009G153500 Phaseolus vulgaris HOM05D006516 ORTHO05D008083 8.7e-62 241.5 179 69.3
Peaxi162Scf01713g00018 Petunia axillaris HOM05D006516 ORTHO05D008083 1.1e-61 241.1 202 61.9
Aa31sc146G60 Aethionema arabicum HOM05D006516 ORTHO05D008083 9.7e-61 238.0 244 57.0
ATR0138G020 Amborella trichopoda HOM05D006516 ORTHO05D008083 1.8e-59 233.8 199 59.3
Sp7g31210 Schrenkiella parvula HOM05D006516 ORTHO05D008083 4.1e-59 232.6 252 56.7
TPR.G33574 Trifolium pratense HOM05D006516 ORTHO05D008083 6.9e-59 231.9 168 66.7
Nn1g08886 Nelumbo nucifera HOM05D006516 ORTHO05D008083 1.9e-56 223.8 222 56.3
Mapoly0149s0016 Marchantia polymorpha HOM05D006516 ORTHO05D008083 4.2e-56 222.6 213 53.1
Nitab4.5_0000733g0220 Nicotiana tabacum HOM05D006516 ORTHO05D008083 1.6e-55 220.7 254 51.6
Pp3c3_32640 Physcomitrium patens HOM05D006516 ORTHO05D008083 1.6e-55 220.7 215 53.0
AagrBONN_evm.TU.Sc2ySwM_369.382 Anthoceros agrestis HOM05D006516 ORTHO05D008083 3.3e-53 213.0 229 50.7
Rhsim10G0127700 Rhododendron simsii HOM05D006516 ORTHO05D008083 7.2e-48 195.3 192 52.1
ClCG02G000090 Citrullus lanatus HOM05D006516 ORTHO05D008083 3.7e-44 183.0 216 50.5
MBI06_g45441_MAGBIO Magnolia biondii HOM05D006516 ORTHO05D008083 2.4e-43 180.3 287 43.6
Aa31sc146G50 Aethionema arabicum HOM05D006516 ORTHO05D008083 1.7e-36 157.5 88 85.2
Nn1g08902 Nelumbo nucifera HOM05D006516 ORTHO05D008083 6.3e-36 155.6 88 84.1
Hma1.2p1_1551F.1_g290160 Hydrangea macrophylla HOM05D006516 ORTHO05D008083 2.4e-35 153.7 90 81.1
CBR_g51961 Chara braunii HOM05D006516 ORTHO05D008083 9.1e-27 125.2 233 34.3
Peaxi162Scf01713g00017 Petunia axillaris HOM05D006516 ORTHO05D008083 9.5e-24 115.2 67 86.6
Sp7g31200 Schrenkiella parvula HOM05D006516 ORTHO05D008083 6.8e-22 109.0 61 90.2
Nn1g08901 Nelumbo nucifera HOM05D003028 ORTHO05D003465 3.7e-20 103.2 154 40.9
PRCOL_00004760 Prasinoderma coloniale HOM05D006516 ORTHO05D008083 6.3e-20 102.4 168 35.1
MCO05G028 Micromonas commoda HOM05D006516 ORTHO05D008083 1.3e-17 94.7 175 34.3
COL.COLO4_30311 Corchorus olitorius HOM05D000221 ORTHO05D008083 9.8e-13 78.6 48 81.2
FAN28G1699 Fragaria x ananassa HOM05D006516 ORTHO05D008083 1.3e-12 78.2 47 85.1
MBI06_g33106_MAGBIO Magnolia biondii HOM05D006516 ORTHO05D008083 7.8e-10 68.9 67 53.7
vmacro12757 Vaccinium macrocarpon HOM05D006516 ORTHO05D008083 1.1e-06 58.5 33 75.8
ATR0138G010 Amborella trichopoda HOM05D006516 ORTHO05D008083 3.1e-06 57.0 33 87.9


User provided reference genes

Program Settings