Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1039 Acer truncatum HOM05D006051 ORTHO05D052196 5.6e-59 230.7 115 100.0
Atru.chr1.411 Acer truncatum HOM05D006051 ORTHO05D008120 4.8e-26 121.3 66 92.4
MD07G1059800 Malus domestica HOM05D006051 ORTHO05D008120 5.3e-25 117.9 66 87.9
FvH4_4g11580 Fragaria vesca HOM05D006051 ORTHO05D008120 6.9e-25 117.5 75 77.3
FAN04G2808 Fragaria x ananassa HOM05D006051 ORTHO05D008120 6.9e-25 117.5 75 77.3
FAN07G0692 Fragaria x ananassa HOM05D006051 ORTHO05D008120 6.9e-25 117.5 75 77.3
FAN12G2513 Fragaria x ananassa HOM05D006051 ORTHO05D008120 6.9e-25 117.5 75 77.3
FAN12G2962 Fragaria x ananassa HOM05D006051 ORTHO05D008120 6.9e-25 117.5 75 77.3
FAN17G1686 Fragaria x ananassa HOM05D006051 ORTHO05D008120 6.9e-25 117.5 75 77.3
FAN22G1693 Fragaria x ananassa HOM05D006051 ORTHO05D008120 6.9e-25 117.5 75 77.3
RcHm_v2.0_Chr6g0244501 Rosa chinensis HOM05D006051 ORTHO05D008120 6.9e-25 117.5 75 77.3
COL.COLO4_16345 Corchorus olitorius HOM05D006051 ORTHO05D008120 9.0e-25 117.1 66 86.4
Gohir.D05G287000 Gossypium hirsutum HOM05D006051 ORTHO05D008120 9.0e-25 117.1 66 86.4
Gorai.009G302000 Gossypium raimondii HOM05D006051 ORTHO05D008120 9.0e-25 117.1 66 86.4
Thecc.10G124400 Theobroma cacao HOM05D006051 ORTHO05D008120 1.2e-24 116.7 66 84.8
ClCG06G013410 Citrullus lanatus HOM05D006051 ORTHO05D008120 2.0e-24 115.9 66 84.8
CsaV3_1G031660 Cucumis sativus L. HOM05D006051 ORTHO05D008120 2.0e-24 115.9 66 84.8
Duzib128G1182 Durio zibethinus HOM05D006051 ORTHO05D008120 2.0e-24 115.9 66 84.8
Potri.008G012500 Populus trichocarpa HOM05D006051 ORTHO05D008120 2.0e-24 115.9 66 83.3
Sabra08G0007800 Salix brachista HOM05D006051 ORTHO05D008120 2.0e-24 115.9 66 83.3
Sed0004519 Sechium edule HOM05D006051 ORTHO05D008120 2.0e-24 115.9 66 84.8
SalBow4G2472 Salvia bowleyana HOM05D006051 ORTHO05D008120 2.6e-24 115.5 79 75.9
MELO3C017456.2 Cucumis melo HOM05D006051 ORTHO05D008120 3.4e-24 115.2 61 90.2
DCAR_018048 Daucus carota HOM05D006051 ORTHO05D008120 3.4e-24 115.2 78 75.6
Gohir.A05G285900 Gossypium hirsutum HOM05D006051 ORTHO05D008120 4.5e-24 114.8 66 84.8
Manes.07G077300 Manihot esculenta HOM05D006051 ORTHO05D008120 4.5e-24 114.8 66 83.3
SGA_v2.0_scaffold42G16175 Striga asiatica HOM05D006051 ORTHO05D008120 5.9e-24 114.4 66 86.4
SGA_v2.0_scaffold121G33040 Striga asiatica HOM05D000250 ORTHO05D000625 1.0e-23 113.6 61 91.8
Cfa010484 Carpinus fangiana HOM05D006051 ORTHO05D008120 1.3e-23 113.2 61 90.2
Haze_03422 Corylus avellana HOM05D006051 ORTHO05D008120 1.7e-23 112.8 61 90.2
Eucgr.J00305 Eucalyptus grandis HOM05D006051 ORTHO05D008120 1.7e-23 112.8 66 81.8
Hma1.2p1_0264F.1_g105860 Hydrangea macrophylla HOM05D006051 ORTHO05D008120 1.7e-23 112.8 66 84.8
Ciclev10015923m.g Citrus clementina HOM05D006051 ORTHO05D008120 2.2e-23 112.5 66 83.3
HanXRQChr08g0221681 Helianthus annuus HOM05D006051 ORTHO05D008120 2.2e-23 112.5 66 84.8
QL04p049349 Quercus lobata HOM05D006051 ORTHO05D008120 2.2e-23 112.5 61 88.5
Lsat_1_v5_gn_8_11321 Lactuca sativa HOM05D006051 ORTHO05D008120 2.9e-23 112.1 66 84.8
CiPaw.13G045900 Carya illinoinensis HOM05D006051 ORTHO05D008120 3.8e-23 111.7 61 88.5
ECA233G2097 Erigeron canadensis HOM05D006051 ORTHO05D008120 3.8e-23 111.7 66 83.3
Peaxi162Scf00304g00081 Petunia axillaris HOM05D006051 ORTHO05D008120 3.8e-23 111.7 66 84.8
MSTRG.157 Avicennia marina HOM05D006051 ORTHO05D008120 5.0e-23 111.3 66 80.3
Cpa.g.sc33.112 Carica papaya HOM05D006051 ORTHO05D008120 5.0e-23 111.3 66 83.3
Migut.F01226 Erythranthe guttata HOM05D006051 ORTHO05D008120 5.0e-23 111.3 66 83.3
MSTRG.8386 Avicennia marina HOM05D006051 ORTHO05D008120 6.5e-23 110.9 66 84.8
Nitab4.5_0000094g0030 Nicotiana tabacum HOM05D006051 ORTHO05D008120 6.5e-23 110.9 66 83.3
Solyc06g048540.3 Solanum lycopersicum HOM05D006051 ORTHO05D008120 6.5e-23 110.9 66 83.3
Sopen06g014710 Solanum pennellii HOM05D006051 ORTHO05D008120 6.5e-23 110.9 66 83.3
PGSC0003DMG400027595 Solanum tuberosum HOM05D006051 ORTHO05D008120 6.5e-23 110.9 66 83.3
TAR636G2651 Trochodendron aralioides HOM05D006051 ORTHO05D008120 6.5e-23 110.9 66 81.8
Actinidia31641 Actinidia chinensis HOM05D006051 ORTHO05D008120 8.4e-23 110.5 76 76.3
AL3G22140 Arabidopsis lyrata HOM05D006051 ORTHO05D008120 8.4e-23 110.5 66 81.8
AT3G10670 Arabidopsis thaliana HOM05D006051 ORTHO05D008120 8.4e-23 110.5 66 81.8
BcaC05g29439 Brassica carinata HOM05D000059 ORTHO05D017557 8.4e-23 110.5 66 81.8
A03p36690 Brassica napus HOM05D006051 ORTHO05D008120 8.4e-23 110.5 66 81.8
A05p38510 Brassica napus HOM05D000059 ORTHO05D017557 8.4e-23 110.5 66 81.8
C03p44320 Brassica napus HOM05D000059 ORTHO05D017557 8.4e-23 110.5 66 81.8
C05p57410 Brassica napus HOM05D000059 ORTHO05D017557 8.4e-23 110.5 66 81.8
BolC3t16702H Brassica oleracea HOM05D000059 ORTHO05D017557 8.4e-23 110.5 66 81.8
BolC5t34397H Brassica oleracea HOM05D000059 ORTHO05D017557 8.4e-23 110.5 66 81.8
BraA03t12832Z Brassica rapa HOM05D000059 ORTHO05D017557 8.4e-23 110.5 66 81.8
BraA05t22642Z Brassica rapa HOM05D000059 ORTHO05D017557 8.4e-23 110.5 66 81.8
Carub.0003s0990 Capsella rubella HOM05D006051 ORTHO05D008120 8.4e-23 110.5 66 81.8
CARHR085250 Cardamine hirsuta HOM05D006051 ORTHO05D008120 8.4e-23 110.5 66 81.8
Thhalv10021097m.g Eutrema salsugineum HOM05D006051 ORTHO05D008120 8.4e-23 110.5 66 81.8
Nitab4.5_0012485g0010 Nicotiana tabacum HOM05D006051 ORTHO05D008120 8.4e-23 110.5 66 81.8
Sp3g08990 Schrenkiella parvula HOM05D006051 ORTHO05D008120 8.4e-23 110.5 66 81.8
GSVIVG01036588001 Vitis vinifera HOM05D006051 ORTHO05D008120 8.4e-23 110.5 66 81.8
Cc02_g05120 Coffea canephora HOM05D006051 ORTHO05D008120 1.4e-22 109.8 66 83.3
unitig_0.g263 Utricularia gibba HOM05D006051 ORTHO05D008120 1.4e-22 109.8 61 86.9
vmacro06909 Vaccinium macrocarpon HOM05D006051 ORTHO05D008120 1.4e-22 109.8 66 81.8
Aa31LG3G3530 Aethionema arabicum HOM05D006051 ORTHO05D008120 1.9e-22 109.4 66 80.3
CDE06G2681 Ceratophyllum demersum HOM05D006051 ORTHO05D008120 1.9e-22 109.4 70 74.3
Dinv34507 Davidia involucrata HOM05D006051 ORTHO05D008120 1.9e-22 109.4 66 80.3
Sc09g0004830 Simmondsia chinensis HOM05D006051 ORTHO05D008120 2.5e-22 109.0 66 78.8
Actinidia01012 Actinidia chinensis HOM05D006051 ORTHO05D008120 3.2e-22 108.6 66 80.3
CSS0033370 Camellia sinensis var. sinensis HOM05D006051 ORTHO05D008120 3.2e-22 108.6 66 80.3
CDE07G1672 Ceratophyllum demersum HOM05D006051 ORTHO05D008120 3.2e-22 108.6 66 77.3
HanXRQChr03g0071161 Helianthus annuus HOM05D006051 ORTHO05D026343 3.2e-22 108.6 66 81.8
Oeu039396.1 Olea europaea HOM05D006051 ORTHO05D008120 3.2e-22 108.6 66 81.8
Actinidia13633 Actinidia chinensis HOM05D006051 ORTHO05D008120 5.5e-22 107.8 66 81.8
TWI15G0662 Tripterygium wilfordii HOM05D006051 ORTHO05D008120 5.5e-22 107.8 62 83.9
Ah.04g163060 Amaranthus hybridus HOM05D006051 ORTHO05D008120 7.2e-22 107.5 66 77.3
Ah.06g191760 Amaranthus hybridus HOM05D001282 ORTHO05D008120 7.2e-22 107.5 66 77.3
EL10Ac4g08746 Beta vulgaris HOM05D006051 ORTHO05D008120 7.2e-22 107.5 66 77.3
Hund06815 Selenicereus undatus HOM05D006051 ORTHO05D008120 7.2e-22 107.5 66 77.3
CAN.G174.7 Capsicum annuum HOM05D006051 ORTHO05D008120 9.3e-22 107.1 66 81.8
Nitab4.5_0009756g0020 Nicotiana tabacum HOM05D006051 ORTHO05D008120 2.7e-21 105.5 66 80.3
CiPaw.14G036600 Carya illinoinensis HOM05D006051 ORTHO05D008120 4.6e-21 104.8 61 83.6
AUR62014283 Chenopodium quinoa HOM05D006051 ORTHO05D008120 4.6e-21 104.8 62 80.6
AUR62034153 Chenopodium quinoa HOM05D006051 ORTHO05D008120 4.6e-21 104.8 62 80.6
TAR633G1896 Trochodendron aralioides HOM05D006051 ORTHO05D008120 4.6e-21 104.8 66 77.3
arahy.Tifrunner.gnm1.ann1.CDC39Z Arachis hypogaea HOM05D006051 ORTHO05D008120 6.1e-21 104.4 61 82.0
arahy.Tifrunner.gnm1.ann1.LULC1Z Arachis hypogaea HOM05D006051 ORTHO05D008120 6.1e-21 104.4 61 82.0
Ca_17412_v3 Cicer arietinum L. HOM05D006051 ORTHO05D008120 6.1e-21 104.4 61 82.0
Lalb_Chr09g0331911 Lupinus albus HOM05D006051 ORTHO05D008120 6.1e-21 104.4 61 82.0
Medtr8g101390 Medicago truncatula HOM05D006051 ORTHO05D008120 6.1e-21 104.4 61 82.0
Phvul.002G303300 Phaseolus vulgaris HOM05D006051 ORTHO05D008120 6.1e-21 104.4 61 82.0
Psat7g021440 Pisum sativum HOM05D006051 ORTHO05D008120 6.1e-21 104.4 61 82.0
TPR.G25446 Trifolium pratense HOM05D006051 ORTHO05D008120 6.1e-21 104.4 61 82.0
Lalb_Chr05g0223721 Lupinus albus HOM05D006051 ORTHO05D008120 7.9e-21 104.0 61 82.0
PSO170G3597 Papaver somniferum HOM05D006051 ORTHO05D008120 7.9e-21 104.0 62 83.9
PSO339G3490 Papaver somniferum HOM05D006051 ORTHO05D008120 7.9e-21 104.0 62 83.9
PSO384G3752 Papaver somniferum HOM05D006051 ORTHO05D008120 7.9e-21 104.0 62 83.9
VMungo0251G0556 Vigna mungo HOM05D006051 ORTHO05D008120 1.0e-20 103.6 61 83.6
Cre07.g339700 Chlamydomonas reinhardtii HOM05D006051 ORTHO05D008120 1.3e-20 103.2 66 77.3
Glyma.08G028100 Glycine max HOM05D006051 ORTHO05D008120 1.3e-20 103.2 59 84.7
THA.LOC104816479 Tarenaya hassleriana HOM05D006051 ORTHO05D008120 1.3e-20 103.2 66 75.8
Glyma.05G221600 Glycine max HOM05D006051 ORTHO05D008120 1.8e-20 102.8 59 84.7
Nn5g26807 Nelumbo nucifera HOM05D006051 ORTHO05D008120 2.3e-20 102.4 66 75.8
Aqoxy2G00667 Aquilegia oxysepala HOM05D006051 ORTHO05D008120 3.0e-20 102.1 63 79.4
PGR044G2135 Punica granatum HOM05D006051 ORTHO05D008120 3.0e-20 102.1 62 77.4
Lj1A969G90 Lonicera japonica HOM05D006051 ORTHO05D008120 2.5e-19 99.0 71 73.2
AagrBONN_evm.TU.Sc2ySwM_344.3763 Anthoceros agrestis HOM05D006051 ORTHO05D008120 3.3e-19 98.6 66 75.8
Aqoxy2G00665 Aquilegia oxysepala HOM05D006051 ORTHO05D008120 4.3e-19 98.2 60 80.0
MBI01_g45162_MAGBIO Magnolia biondii HOM05D006051 ORTHO05D008120 4.3e-19 98.2 66 74.2
ATR1127G151 Amborella trichopoda HOM05D006051 ORTHO05D008120 9.7e-19 97.1 75 66.7
PRCOL_00003471 Prasinoderma coloniale HOM05D006051 ORTHO05D008120 1.3e-18 96.7 61 78.7
SMO304G0032 Selaginella moellendorffii HOM05D006051 ORTHO05D008120 1.3e-18 96.7 61 77.0
SEGI_02248 Sequoiadendron giganteum HOM05D006051 ORTHO05D008120 1.3e-18 96.7 66 72.7
Mapoly0065s0083 Marchantia polymorpha HOM05D006051 ORTHO05D008120 4.8e-18 94.7 73 67.1
Hund22261 Selenicereus undatus HOM05D006051 ORTHO05D008120 8.2e-18 94.0 60 76.7
CBR_g26048 Chara braunii HOM05D006051 ORTHO05D008120 1.4e-17 93.2 61 73.8
Zm00001eb015880 Zea mays HOM05D006051 ORTHO05D008120 2.4e-17 92.4 62 69.4
Os03g0332700 Oryza sativa ssp. japonica HOM05D006051 ORTHO05D008120 4.1e-17 91.7 67 67.2
QL04p049282 Quercus lobata HOM05D006051 ORTHO05D026343 4.1e-17 91.7 49 91.8
MD02G1261200 Malus domestica HOM05D006051 ORTHO05D008120 5.3e-17 91.3 118 47.5
MCO01G258 Micromonas commoda HOM05D006051 ORTHO05D008120 5.3e-17 91.3 61 72.1
HPP92_012571 Vanilla planifolia HOM05D006051 ORTHO05D008120 5.3e-17 91.3 66 69.7
Lj4g0006181 Lotus japonicus HOM05D006051 ORTHO05D008120 9.0e-17 90.5 55 81.8
Pp3c17_22300 Physcomitrium patens HOM05D006051 ORTHO05D008120 9.0e-17 90.5 70 64.3
Ca_29450_v3 Cicer arietinum L. HOM05D006051 ORTHO05D008120 3.6e-13 78.6 62 59.7
Haze_26808 Corylus avellana HOM05D006051 ORTHO05D008120 1.5e-08 63.2 60 53.3
Pp3c2_1340 Physcomitrium patens HOM05D006051 ORTHO05D008120 7.2e-06 54.3 46 56.5


User provided reference genes

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