Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 2.8e-200 701.8 374 100.0
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 7.0e-135 484.6 368 68.2
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 7.2e-132 474.6 370 66.8
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 7.2e-132 474.6 375 68.8
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 1.5e-129 466.8 375 65.3
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 2.6e-129 466.1 375 70.7
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 9.8e-129 464.2 382 63.4
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 1.3e-128 463.8 384 63.3
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 8.3e-128 461.1 309 75.4
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 3.1e-127 459.1 370 65.7
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 2.0e-126 456.4 362 65.2
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 2.7e-126 456.1 377 64.5
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 2.7e-126 456.1 370 62.7
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.3e-125 453.0 371 63.6
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 5.0e-125 451.8 370 63.5
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 6.6e-125 451.4 288 76.0
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 8.6e-125 451.1 371 63.6
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 2.5e-124 449.5 373 66.2
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 2.1e-123 446.4 356 69.9
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 8.0e-123 444.5 367 66.8
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 2.3e-122 443.0 327 66.4
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 2.0e-121 439.9 352 65.1
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 5.8e-121 438.3 341 65.4
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 3.2e-119 432.6 335 66.3
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 5.4e-119 431.8 349 63.9
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 3.5e-118 429.1 367 63.8
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 2.3e-117 426.4 375 65.3
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 3.9e-117 425.6 361 63.2
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 5.0e-117 425.2 360 63.3
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 5.0e-117 425.2 360 63.1
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 5.0e-117 425.2 368 60.1
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 7.3e-116 421.4 360 62.8
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 9.5e-116 421.0 362 63.8
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 9.5e-116 421.0 364 61.5
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 8.0e-115 417.9 370 60.0
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 2.3e-114 416.4 378 59.3
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 4.0e-114 415.6 292 67.8
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 1.5e-113 413.7 294 67.3
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 1.5e-113 413.7 338 66.6
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 3.4e-113 412.5 409 59.2
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 4.4e-113 412.1 343 58.3
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 9.8e-113 411.0 370 58.9
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 1.3e-112 410.6 365 60.8
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 2.2e-112 409.8 371 58.8
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 3.7e-112 409.1 295 66.8
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 3.7e-112 409.1 343 59.2
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 4.9e-112 408.7 376 58.0
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 1.1e-111 407.5 295 68.1
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 2.4e-111 406.4 289 69.6
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 2.4e-111 406.4 326 62.6
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 7.0e-111 404.8 376 57.7
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 2.1e-110 403.3 347 59.4
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 2.7e-110 402.9 321 60.1
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 3.5e-110 402.5 372 58.3
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 3.5e-110 402.5 374 56.1
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 4.6e-110 402.1 369 58.0
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 7.8e-110 401.4 376 57.2
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 7.8e-110 401.4 376 57.2
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 3.9e-109 399.1 371 58.8
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 8.6e-109 397.9 401 53.1
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 1.5e-108 397.1 331 65.3
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 1.5e-108 397.1 371 58.5
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 2.5e-108 396.4 374 56.4
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 3.3e-108 396.0 369 55.6
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 4.3e-108 395.6 370 55.4
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 4.3e-108 395.6 370 55.4
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 9.5e-108 394.4 369 57.7
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.2e-107 394.0 375 55.5
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 2.8e-107 392.9 372 55.6
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 3.6e-107 392.5 373 55.8
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 8.1e-107 391.3 330 59.1
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 4.0e-106 389.0 297 63.3
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 4.0e-106 389.0 369 54.7
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 4.4e-105 385.6 370 56.5
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 9.9e-105 384.4 298 63.8
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 1.9e-103 380.2 373 54.7
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 3.2e-103 379.4 287 63.1
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 3.5e-102 375.9 283 63.6
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 1.7e-101 373.6 288 62.2
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 2.8e-99 366.3 277 64.3
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 2.4e-98 363.2 383 52.2
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 4.0e-98 362.5 360 55.6
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 5.2e-98 362.1 371 55.8
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 1.3e-96 357.5 284 61.3
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 4.2e-95 352.4 263 63.9
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 7.8e-94 348.2 303 63.7
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 1.0e-93 347.8 292 59.2
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 2.3e-93 346.7 326 54.0
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 8.7e-93 344.7 288 59.7
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 1.8e-90 337.0 379 53.6
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 3.4e-89 332.8 287 57.5
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 3.4e-89 332.8 291 58.1
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 7.8e-86 321.6 339 55.5
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 5.3e-82 308.9 228 64.9
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 2.1e-78 297.0 289 51.6
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 2.3e-77 293.5 308 49.0
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 8.7e-77 291.6 287 51.6
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 8.7e-77 291.6 290 52.1
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 9.0e-74 281.6 287 49.8
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 2.5e-68 263.5 228 56.1
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 2.6e-65 253.4 214 59.8
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 1.8e-61 240.7 259 51.7
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 1.3e-59 234.6 227 52.4
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 4.8e-59 232.6 290 45.9
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 6.9e-58 228.8 288 45.1
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 1.2e-57 228.0 343 39.7
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 4.5e-57 226.1 173 63.6
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 1.3e-56 224.6 288 44.8
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 2.9e-56 223.4 295 47.8
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 5.5e-55 219.2 257 47.1
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 1.2e-54 218.0 256 51.6
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 8.8e-53 211.8 287 41.5
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 2.7e-46 190.3 285 39.6
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 1.5e-44 184.5 167 58.1
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 7.4e-44 182.2 276 37.7
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 9.7e-44 181.8 165 54.5
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 4.5e-41 172.9 111 67.6
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 8.0e-38 162.2 144 53.5
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 1.8e-37 161.0 108 69.4
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 3.9e-37 159.8 134 64.9
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 2.8e-35 153.7 183 44.8
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 1.2e-30 138.3 100 66.0
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 1.6e-25 121.3 264 30.7
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 1.2e-22 111.7 62 79.0
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 3.6e-22 110.2 114 48.2
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 4.0e-21 106.7 70 71.4
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 2.0e-20 104.4 97 72.2
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 2.0e-20 104.4 63 69.8
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 7.5e-20 102.4 62 72.6
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 1.3e-19 101.7 62 74.2
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 3.7e-19 100.1 53 83.0
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 6.6e-16 89.4 53 71.7
Lj2A1074G31 Lonicera japonica HOM05D005912 ORTHO05D007329 1.2e-12 78.6 50 64.0
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 3.4e-12 77.0 129 31.0
SEGI_06824 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 3.5e-09 67.0 50 54.0
RcHm_v2.0_Chr4g0418411 Rosa chinensis HOM05D005912 ORTHO05D007329 8.6e-08 62.4 60 58.3
RcHm_v2.0_Chr7g0224811 Rosa chinensis HOM05D005912 ORTHO05D007329 2.5e-07 60.8 60 58.3


User provided reference genes

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