Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.924 Acer truncatum HOM05D000156 ORTHO05D009248 1.4e-59 233.0 142 100.0
Ciclev10027351m.g Citrus clementina HOM05D000156 ORTHO05D009248 8.5e-25 117.5 139 54.7
Thecc.01G010300 Theobroma cacao HOM05D000156 ORTHO05D009248 8.8e-22 107.5 140 48.6
Prupe.7G176100 Prunus persica HOM05D000156 ORTHO05D009248 1.7e-20 103.2 136 47.8
FAN19G2519 Fragaria x ananassa HOM05D000156 ORTHO05D009248 1.2e-18 97.1 143 43.4
Cfa007038 Carpinus fangiana HOM05D030635 ORTHO05D009248 1.6e-18 96.7 146 43.8
FvH4_1g10950 Fragaria vesca HOM05D000156 ORTHO05D009248 1.6e-18 96.7 141 44.0
TWI09G0192 Tripterygium wilfordii HOM05D000156 ORTHO05D009248 3.5e-18 95.5 133 42.9
FAN23G0345 Fragaria x ananassa HOM05D000156 ORTHO05D009248 5.9e-18 94.7 141 43.3
Haze_03691 Corylus avellana HOM05D030635 ORTHO05D009248 1.3e-17 93.6 139 43.9
Duzib147G0223 Durio zibethinus HOM05D000156 ORTHO05D009248 1.3e-17 93.6 138 42.8
Hma1.2p1_0315F.1_g122670 Hydrangea macrophylla HOM05D000156 ORTHO05D009248 2.9e-17 92.4 141 43.3
Potri.005G106300 Populus trichocarpa HOM05D000156 ORTHO05D009248 2.9e-17 92.4 139 45.3
TPR.G32019 Trifolium pratense HOM05D000156 ORTHO05D009248 2.9e-17 92.4 147 45.6
Dinv40152 Davidia involucrata HOM05D000156 ORTHO05D009248 3.8e-17 92.0 140 43.6
Sed0006563 Sechium edule HOM05D000156 ORTHO05D009248 3.8e-17 92.0 142 43.0
Medtr8g074730 Medicago truncatula HOM05D000156 ORTHO05D009248 5.0e-17 91.7 141 46.1
FAN28G0078 Fragaria x ananassa HOM05D000156 ORTHO05D009248 6.5e-17 91.3 139 41.7
Gorai.003G005000 Gossypium raimondii HOM05D000156 ORTHO05D009248 6.5e-17 91.3 141 43.3
Gohir.A02G175100 Gossypium hirsutum HOM05D000156 ORTHO05D009248 8.6e-17 90.9 140 43.6
Gohir.D03G004700 Gossypium hirsutum HOM05D000156 ORTHO05D009248 8.6e-17 90.9 141 43.3
Aa31sc1371G10 Aethionema arabicum HOM05D000156 ORTHO05D009248 1.9e-16 89.7 139 44.6
Manes.02G111100 Manihot esculenta HOM05D000156 ORTHO05D009248 5.5e-16 88.2 138 42.0
GSVIVG01002333001 Vitis vinifera HOM05D000156 ORTHO05D009248 1.2e-15 87.0 138 43.5
Psat4g102960 Pisum sativum HOM05D000156 ORTHO05D009248 1.6e-15 86.7 147 43.5
Carub.0005s1776 Capsella rubella HOM05D000156 ORTHO05D009248 2.8e-15 85.9 139 51.1
Peaxi162Scf00300g00014 Petunia axillaris HOM05D000156 ORTHO05D009248 4.7e-15 85.1 143 44.1
VMungo0251G1272 Vigna mungo HOM05D000156 ORTHO05D009248 4.7e-15 85.1 138 42.0
AT3G51380 Arabidopsis thaliana HOM05D000156 ORTHO05D009248 6.1e-15 84.7 139 42.4
Nitab4.5_0007439g0010 Nicotiana tabacum HOM05D000156 ORTHO05D009248 6.1e-15 84.7 143 43.4
CiPaw.07G005900 Carya illinoinensis HOM05D000156 ORTHO05D009248 8.0e-15 84.3 139 42.4
Eucgr.I02290 Eucalyptus grandis HOM05D000156 ORTHO05D009248 8.0e-15 84.3 138 39.9
Thhalv10010850m.g Eutrema salsugineum HOM05D000156 ORTHO05D009248 8.0e-15 84.3 139 42.4
AL5G31820 Arabidopsis lyrata HOM05D000156 ORTHO05D009248 1.4e-14 83.6 139 41.0
CAN.G890.21 Capsicum annuum HOM05D000156 ORTHO05D009248 1.8e-14 83.2 143 43.4
Glyma.16G121000 Glycine max HOM05D000156 ORTHO05D009248 1.8e-14 83.2 139 43.2
Lj4A227T49 Lonicera japonica HOM05D000156 ORTHO05D009248 1.8e-14 83.2 143 42.0
Nitab4.5_0001696g0130 Nicotiana tabacum HOM05D000156 ORTHO05D009248 4.0e-14 82.0 143 42.7
Solyc02g083285.2 Solanum lycopersicum HOM05D000156 ORTHO05D009248 4.0e-14 82.0 141 40.4
Sopen02g028080 Solanum pennellii HOM05D000156 ORTHO05D009248 4.0e-14 82.0 143 39.9
Cc07_g11420 Coffea canephora HOM05D000156 ORTHO05D009248 5.2e-14 81.6 135 38.5
Phvul.003G267500 Phaseolus vulgaris HOM05D000156 ORTHO05D009248 5.2e-14 81.6 139 40.3
CARHR160980 Cardamine hirsuta HOM05D000156 ORTHO05D009248 6.8e-14 81.3 139 41.0
PGSC0003DMG400003665 Solanum tuberosum HOM05D000156 ORTHO05D009248 6.8e-14 81.3 143 39.9
Sp5g10840 Schrenkiella parvula HOM05D000156 ORTHO05D009248 1.5e-13 80.1 139 41.0
THA.LOC104821347 Tarenaya hassleriana HOM05D000156 ORTHO05D009248 2.0e-13 79.7 137 39.4
Lalb_Chr05g0229701 Lupinus albus HOM05D000156 ORTHO05D009248 2.6e-13 79.3 140 40.7
ClCG10G000420 Citrullus lanatus HOM05D000156 ORTHO05D009248 4.4e-13 78.6 150 37.3
Rhsim08G0029900 Rhododendron simsii HOM05D000156 ORTHO05D009248 4.4e-13 78.6 152 36.8
Sabra05G0087200 Salix brachista HOM05D000156 ORTHO05D009248 9.8e-13 77.4 139 38.1
ATR0661G479 Amborella trichopoda HOM05D000156 ORTHO05D009248 1.3e-12 77.0 138 37.7
Lj4g0004150 Lotus japonicus HOM05D000156 ORTHO05D009248 1.3e-12 77.0 147 38.1
A03p48270 Brassica napus HOM05D000156 ORTHO05D009248 2.2e-12 76.3 139 48.2
BraA03t13936Z Brassica rapa HOM05D000156 ORTHO05D009248 2.2e-12 76.3 139 48.2
BcaB01g00521 Brassica carinata HOM05D000156 ORTHO05D009248 2.8e-12 75.9 139 39.6
BcaB01g00522 Brassica carinata HOM05D000156 ORTHO05D009248 2.8e-12 75.9 139 39.6
PGR119G0801 Punica granatum HOM05D000156 ORTHO05D009248 2.8e-12 75.9 142 38.0
BcaNung06757 Brassica carinata HOM05D000156 ORTHO05D009248 3.7e-12 75.5 139 38.8
CANSAT25G0279 Cannabis sativa HOM05D000156 ORTHO05D009248 3.7e-12 75.5 141 41.8
CANSAT25G2258 Cannabis sativa HOM05D000156 ORTHO05D009248 3.7e-12 75.5 141 41.8
BcaC06g33033 Brassica carinata HOM05D000156 ORTHO05D009248 6.3e-12 74.7 69 59.4
BcaC06g33034 Brassica carinata HOM05D000156 ORTHO05D009248 6.3e-12 74.7 139 39.6
C07p46310 Brassica napus HOM05D000156 ORTHO05D009248 6.3e-12 74.7 139 39.6
BolC7t45149H Brassica oleracea HOM05D000156 ORTHO05D009248 6.3e-12 74.7 139 39.6
COL.COLO4_22507 Corchorus olitorius HOM05D000156 ORTHO05D009248 8.3e-12 74.3 143 39.2
CsaV3_3G000450 Cucumis sativus L. HOM05D000156 ORTHO05D009248 8.3e-12 74.3 152 37.5
Os03g0134800 Oryza sativa ssp. japonica HOM05D000156 ORTHO05D009248 2.4e-11 72.8 105 41.9
Aqoxy6G01908 Aquilegia oxysepala HOM05D000156 ORTHO05D009248 4.1e-11 72.0 144 41.7
SalBow3G0932 Salvia bowleyana HOM05D000156 ORTHO05D009248 4.1e-11 72.0 132 37.1
Sc03g0003800 Simmondsia chinensis HOM05D000156 ORTHO05D009248 4.1e-11 72.0 64 60.9
A09p44460 Brassica napus HOM05D000156 ORTHO05D009248 7.0e-11 71.2 136 38.2
BraA09t39904Z Brassica rapa HOM05D000156 ORTHO05D009248 7.0e-11 71.2 136 38.2
arahy.Tifrunner.gnm1.ann1.9MU5QJ Arachis hypogaea HOM05D000156 ORTHO05D009248 9.2e-11 70.9 134 35.8
SGA_v2.0_scaffold2G00976 Striga asiatica HOM05D000156 ORTHO05D009248 1.6e-10 70.1 83 50.6
CANSAT25G1738 Cannabis sativa HOM05D000156 ORTHO05D009248 2.0e-10 69.7 70 52.9
C08p26660 Brassica napus HOM05D000156 ORTHO05D009248 5.9e-10 68.2 140 36.4
BolC8t50280H Brassica oleracea HOM05D000156 ORTHO05D009248 5.9e-10 68.2 140 36.4
Migut.H02186 Erythranthe guttata HOM05D000156 ORTHO05D009248 1.3e-09 67.0 130 38.5
Ah.03g134240 Amaranthus hybridus HOM05D000156 ORTHO05D009248 2.9e-09 65.9 119 37.8
EL10Ac6g13340 Beta vulgaris HOM05D000156 ORTHO05D009248 2.9e-09 65.9 65 52.3
SalBow3G3967 Salvia bowleyana HOM05D000156 ORTHO05D009248 6.6e-09 64.7 63 52.4
Actinidia28737 Actinidia chinensis HOM05D000156 ORTHO05D009248 1.5e-08 63.5 97 44.3
FAN26G2339 Fragaria x ananassa HOM05D000156 ORTHO05D009248 1.5e-08 63.5 101 42.6
Glyma.04G235400 Glycine max HOM05D000156 ORTHO05D005692 4.3e-08 62.0 67 47.8
PSO675G2994 Papaver somniferum HOM05D000156 ORTHO05D009248 9.5e-08 60.8 65 50.8
A06p28140 Brassica napus HOM05D000156 ORTHO05D005692 2.1e-07 59.7 123 37.4
ClCG00G004130 Citrullus lanatus HOM05D000156 ORTHO05D005692 2.8e-07 59.3 67 47.8
ClCG01G000410 Citrullus lanatus HOM05D000156 ORTHO05D005692 2.8e-07 59.3 67 47.8
PSO541G3017 Papaver somniferum HOM05D000156 ORTHO05D009248 2.8e-07 59.3 65 49.2
QL06p052304 Quercus lobata HOM05D030635 ORTHO05D009248 4.7e-07 58.5 100 40.0
C03p65700 Brassica napus HOM05D000156 ORTHO05D005692 6.1e-07 58.2 174 31.6
MD01G1218100 Malus domestica HOM05D000156 ORTHO05D005692 6.1e-07 58.2 67 46.3
BcaC01g02398 Brassica carinata HOM05D000156 ORTHO05D005692 8.0e-07 57.8 174 31.6
BolC3t18823H Brassica oleracea HOM05D000156 ORTHO05D005692 8.0e-07 57.8 174 31.6
CANSAT25G3886 Cannabis sativa HOM05D000156 ORTHO05D009248 8.0e-07 57.8 147 34.0
CDE06G1490 Ceratophyllum demersum HOM05D000585 ORTHO05D003019 8.0e-07 57.8 65 66.2
Aa31LG4G17670 Aethionema arabicum HOM05D000156 ORTHO05D005692 1.0e-06 57.4 67 47.8
AL5G29010 Arabidopsis lyrata HOM05D000156 ORTHO05D005692 1.0e-06 57.4 67 47.8
AT3G49260 Arabidopsis thaliana HOM05D000156 ORTHO05D005692 1.0e-06 57.4 67 47.8
CARHR158130 Cardamine hirsuta HOM05D000156 ORTHO05D005692 1.0e-06 57.4 67 47.8
Thhalv10010338m.g Eutrema salsugineum HOM05D000156 ORTHO05D005692 1.0e-06 57.4 67 47.8
Sp5g12820 Schrenkiella parvula HOM05D000156 ORTHO05D005692 1.0e-06 57.4 67 47.8
Solyc03g032243.1 Solanum lycopersicum HOM05D000156 ORTHO05D009248 1.4e-06 57.0 67 46.3
CDE07G1410 Ceratophyllum demersum HOM05D000585 ORTHO05D003019 1.8e-06 56.6 70 60.0
Ciclev10027246m.g Citrus clementina HOM05D000521 ORTHO05D000384 1.8e-06 56.6 125 32.0
SEGI_27869 Sequoiadendron giganteum HOM05D000156 ORTHO05D009248 1.8e-06 56.6 66 48.5
DCAR_020324 Daucus carota HOM05D000156 ORTHO05D005692 2.3e-06 56.2 67 44.8
Nitab4.5_0001561g0050 Nicotiana tabacum HOM05D000156 ORTHO05D009248 3.0e-06 55.8 127 37.0
Glyma.08G191400 Glycine max HOM05D000156 ORTHO05D001290 5.2e-06 55.1 88 47.7
BcaB01g00733 Brassica carinata HOM05D000156 ORTHO05D005692 6.8e-06 54.7 67 46.3
SEGI_04071 Sequoiadendron giganteum HOM05D000585 ORTHO05D001841 6.8e-06 54.7 68 60.3


User provided reference genes

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