Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1421.0 697 100.0
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1311.6 698 90.0
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1309.7 698 89.7
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1275.4 698 87.1
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1275.0 698 87.0
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1267.3 698 86.7
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1258.8 699 86.6
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1258.8 691 87.1
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1257.3 698 86.2
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1252.3 700 86.7
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1246.9 698 85.4
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1241.5 698 85.1
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1241.5 694 86.0
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1238.0 698 84.7
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1236.9 698 85.8
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1231.1 695 84.3
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1225.3 697 84.6
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1224.5 695 84.6
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1221.8 695 84.5
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1220.7 695 84.0
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1219.5 695 83.6
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1217.6 693 84.8
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1216.4 693 83.5
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1216.4 723 82.4
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1214.1 695 82.7
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1213.0 697 83.8
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1211.4 694 84.0
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1210.3 693 82.7
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1209.9 694 84.1
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1209.5 698 83.0
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1209.5 698 82.8
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1208.7 698 84.0
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1208.7 693 84.3
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1208.4 693 82.0
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1208.4 692 82.9
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1207.2 698 82.2
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1206.4 697 82.5
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1206.0 693 82.5
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1206.0 694 82.4
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1205.7 694 82.7
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1204.9 677 85.8
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1199.9 695 81.6
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1199.9 695 83.0
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1198.3 692 81.9
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1196.8 695 82.7
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1194.9 698 81.9
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1194.9 695 82.3
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1193.7 695 82.3
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1193.3 699 81.4
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1193.3 695 82.2
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1193.3 698 82.1
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1192.6 694 81.6
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1191.8 698 82.2
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1190.3 694 82.6
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1189.5 695 81.6
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1187.9 698 82.1
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1187.6 698 81.4
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1187.2 694 81.3
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1185.6 700 81.4
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1184.1 695 81.3
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1183.3 694 81.1
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1182.9 695 80.6
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1180.2 698 80.7
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1176.8 694 80.0
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1176.4 699 81.1
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1176.0 694 80.0
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1174.1 694 80.5
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1173.7 694 80.4
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1172.1 698 81.5
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1171.4 694 80.7
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1171.4 695 79.3
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1170.6 698 80.4
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1167.1 694 79.3
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1166.4 694 82.6
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1164.1 696 79.6
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1163.7 695 81.3
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1162.9 694 78.7
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1161.7 698 81.8
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1161.4 696 79.3
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1161.0 719 78.4
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1154.8 693 81.5
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1153.7 698 79.7
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1150.6 687 78.6
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1149.4 693 79.7
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1144.8 747 75.4
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1139.4 741 76.2
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1134.8 718 76.9
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1132.1 713 75.7
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1131.3 647 83.0
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1130.9 699 79.5
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1119.0 676 80.8
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 0.0e+00 1117.1 698 78.5
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1116.7 676 80.6
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 0.0e+00 1113.6 612 87.3
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1109.7 698 75.5
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 0.0e+00 1106.7 695 78.1
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 0.0e+00 1094.7 699 75.7
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 0.0e+00 1076.6 678 76.0
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 3.1e-309 1064.7 585 86.3
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 1.8e-301 1038.9 689 72.9
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 1.2e-300 1036.2 705 71.9
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 5.6e-295 1017.3 641 78.6
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 2.8e-294 1015.0 702 69.9
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 3.6e-278 961.4 712 70.1
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 2.2e-267 925.6 581 76.8
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 2.9e-267 925.2 540 82.8
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 1.1e-245 853.6 699 59.9
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 3.1e-245 852.0 567 74.4
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 2.6e-228 795.8 474 81.9
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 1.0e-224 783.9 697 54.7
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 6.7e-224 781.2 703 55.8
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 6.7e-224 781.2 703 55.8
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.8e-221 773.1 704 55.1
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 7.2e-218 761.1 711 55.6
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 3.6e-217 758.8 702 54.0
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.0e-195 687.6 386 85.5
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 5.3e-160 568.9 719 44.5
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 2.8e-153 546.6 378 69.8
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 1.5e-143 514.2 504 56.5
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 7.7e-111 405.6 248 78.6
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 1.2e-108 398.3 765 34.8
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 2.9e-102 377.1 812 32.8
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 6.1e-100 369.4 269 65.8
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 3.0e-99 367.1 323 59.1
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 1.7e-78 298.1 199 71.9
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 1.6e-76 291.6 247 61.9
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 3.6e-76 290.4 250 61.2
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 9.8e-74 282.3 184 74.5
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 3.5e-71 273.9 166 76.5
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 2.3e-67 261.2 628 32.5
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 1.9e-64 251.5 235 57.4
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 5.4e-48 196.8 127 70.9
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 2.1e-47 194.9 138 72.5
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 1.8e-43 181.8 145 66.9
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 2.8e-36 157.9 95 81.1
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 4.8e-36 157.1 231 42.9
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 2.0e-34 151.8 76 92.1
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 8.4e-33 146.4 75 90.7
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 5.3e-27 127.1 84 67.9
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 1.8e-22 112.1 86 61.6
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 1.2e-15 89.4 87 52.9
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 1.3e-12 79.3 49 77.6
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 1.1e-11 76.3 49 71.4
MBI01_g27920_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D000004 1.8e-06 58.9 33 75.8
HanXRQChr15g0473031 Helianthus annuus HOM05D005163 ORTHO05D220685 2.3e-06 58.5 49 63.3


User provided reference genes

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