Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.587 Acer truncatum HOM05D000003 ORTHO05D017149 1.2e-132 476.5 230 100.0
Atru.chr8.816 Acer truncatum HOM05D000003 ORTHO05D000004 5.4e-29 132.1 308 31.2
Atru.chr5.2535 Acer truncatum HOM05D000003 ORTHO05D000004 3.6e-25 119.4 236 34.7
Atru.chr6.710 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-23 114.4 260 30.0
Atru.chr4.2367 Acer truncatum HOM05D000003 ORTHO05D000167 5.6e-18 95.5 259 28.6
Atru.chr2.2135 Acer truncatum HOM05D000003 ORTHO05D000004 4.5e-15 85.9 305 24.6
Atru.chr2.2758 Acer truncatum HOM05D000003 ORTHO05D000167 4.5e-15 85.9 208 32.2
Atru.chr2.108 Acer truncatum HOM05D000003 ORTHO05D000004 7.6e-15 85.1 308 24.7
CANSAT01G0249 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-14 83.6 266 27.4
Atru.chr10.1454 Acer truncatum HOM05D000003 ORTHO05D000167 1.1e-13 81.3 309 23.9
Atru.chr10.527 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-13 81.3 280 26.4
Atru.chr6.1288 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-13 80.9 272 25.7
COL.COLO4_07023 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.4e-13 80.9 263 24.7
CANSAT56G2110 Cannabis sativa HOM05D000003 ORTHO05D000167 5.4e-13 79.0 227 26.4
Atru.chr3.1273 Acer truncatum HOM05D000003 ORTHO05D000167 1.2e-12 77.8 314 24.5
CANSAT21G2012 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-12 77.4 269 27.5
Atru.chr3.1768 Acer truncatum HOM05D000003 ORTHO05D000167 2.1e-12 77.0 238 28.6
FvH4_6g22781 Fragaria vesca HOM05D000003 ORTHO05D000006 3.5e-12 76.3 290 24.5
Atru.chr6.242 Acer truncatum HOM05D000003 ORTHO05D000006 1.3e-11 74.3 258 26.7
Atru.chr11.1731 Acer truncatum HOM05D000003 ORTHO05D000167 1.8e-11 73.9 316 23.4
CANSAT35G1027 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-11 73.9 205 27.3
FvH4_4g01552 Fragaria vesca HOM05D000003 ORTHO05D006737 1.8e-11 73.9 226 26.5
Atru.chr13.2074 Acer truncatum HOM05D000003 ORTHO05D000167 3.0e-11 73.2 334 25.1
Atru.chr7.658 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-11 73.2 250 26.4
TWI09G0223 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.9e-11 72.8 219 27.9
CANSAT78G0894 Cannabis sativa HOM05D000003 ORTHO05D000167 5.1e-11 72.4 257 23.3
Sed0009869 Sechium edule HOM05D000003 ORTHO05D000167 6.7e-11 72.0 243 25.1
Atru.chr13.2597 Acer truncatum HOM05D000003 ORTHO05D000004 8.7e-11 71.6 309 23.3
CANSAT01G0458 Cannabis sativa HOM05D000003 ORTHO05D000167 8.7e-11 71.6 241 26.1
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 8.7e-11 71.6 221 27.1
Atru.chr4.2187 Acer truncatum HOM05D000003 ORTHO05D000167 1.9e-10 70.5 209 29.7
Atru.chr10.535 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-10 70.1 313 25.2
FvH4_5g08801 Fragaria vesca HOM05D000003 ORTHO05D000004 2.5e-10 70.1 234 24.8
Atru.chr11.694 Acer truncatum HOM05D000003 ORTHO05D000004 4.3e-10 69.3 206 28.2
COL.COLO4_15583 Corchorus olitorius HOM05D000003 ORTHO05D000004 4.3e-10 69.3 282 22.7
Atru.chr5.2480 Acer truncatum HOM05D000003 ORTHO05D000167 7.4e-10 68.6 89 42.7
Atru.chr8.782 Acer truncatum HOM05D000003 ORTHO05D000004 7.4e-10 68.6 311 24.4
Atru.chr1.1940 Acer truncatum HOM05D000003 ORTHO05D000004 9.6e-10 68.2 303 22.4
Atru.chr1.2556 Acer truncatum HOM05D000003 ORTHO05D000004 9.6e-10 68.2 238 27.7
Atru.chr2.2391 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-09 67.8 85 42.4
EL10Ac1g01410 Beta vulgaris HOM05D000003 ORTHO05D000167 1.3e-09 67.8 103 38.8
FvH4_6g18902 Fragaria vesca HOM05D000003 ORTHO05D010713 1.3e-09 67.8 226 25.7
Medtr4g065063 Medicago truncatula HOM05D000003 ORTHO05D000004 1.3e-09 67.8 195 26.7
QL03p040497 Quercus lobata HOM05D000003 ORTHO05D000004 1.3e-09 67.8 123 31.7
CANSAT56G4406 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-09 67.4 210 23.8
CSS0034752 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 2.8e-09 66.6 215 27.4
CSS0022949 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.7e-09 66.2 215 27.0
CANSAT01G1615 Cannabis sativa HOM05D000003 ORTHO05D000004 3.7e-09 66.2 223 25.1
Prupe.7G049300 Prunus persica HOM05D000003 ORTHO05D000004 3.7e-09 66.2 284 24.3
CANSAT11G2301 Cannabis sativa HOM05D000003 ORTHO05D000004 4.8e-09 65.9 248 25.0
FvH4_4g08194 Fragaria vesca HOM05D000003 ORTHO05D000004 4.8e-09 65.9 220 24.5
CANSAT25G0043 Cannabis sativa HOM05D000003 ORTHO05D000004 6.2e-09 65.5 241 25.3
Sed0004028 Sechium edule HOM05D000003 ORTHO05D000004 6.2e-09 65.5 282 23.0
CANSAT64G0935 Cannabis sativa HOM05D000003 ORTHO05D000167 8.1e-09 65.1 214 27.1
RcHm_v2.0_Chr5g0041361 Rosa chinensis HOM05D000279 ORTHO05D000022 1.1e-08 64.7 99 40.4
Atru.chr8.899 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-08 64.3 240 26.2
CANSAT01G2780 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-08 64.3 249 26.9
Sed0026194 Sechium edule HOM05D000003 ORTHO05D000167 1.4e-08 64.3 127 34.6
Atru.chr10.1274 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-08 63.9 262 24.8
Prupe.3G135000 Prunus persica HOM05D000003 ORTHO05D000004 3.1e-08 63.2 220 26.4
Sed0017531 Sechium edule HOM05D000003 ORTHO05D000126 3.1e-08 63.2 301 23.9
Atru.chr2.931 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-08 62.8 249 23.3
Atru.chr9.1010 Acer truncatum HOM05D000003 ORTHO05D000167 4.0e-08 62.8 176 30.1
EL10Ac1g02234 Beta vulgaris HOM05D008685 ORTHO05D000022 4.0e-08 62.8 220 26.4
Sed0018752 Sechium edule HOM05D000003 ORTHO05D000167 4.0e-08 62.8 210 24.8
FvH4_1g26290 Fragaria vesca HOM05D000003 ORTHO05D010713 5.3e-08 62.4 248 24.2
Atru.chr8.67 Acer truncatum HOM05D000003 ORTHO05D000167 6.9e-08 62.0 110 33.6
Atru.chr7.419 Acer truncatum HOM05D000003 ORTHO05D000004 9.0e-08 61.6 221 27.6
AUR62039188 Chenopodium quinoa HOM05D000003 ORTHO05D000004 9.0e-08 61.6 231 26.8
Atru.chr7.130 Acer truncatum HOM05D000003 ORTHO05D000126 1.2e-07 61.2 86 43.0
AUR62036713 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.2e-07 61.2 274 24.1
QL04p082656 Quercus lobata HOM05D000003 ORTHO05D000167 1.2e-07 61.2 210 24.3
Atru.chr3.1527 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-07 60.8 52 48.1
Atru.chr6.266 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-07 60.8 231 24.2
CANSAT01G2140 Cannabis sativa HOM05D000003 ORTHO05D000167 1.5e-07 60.8 266 23.7
Prupe.3G063400 Prunus persica HOM05D000003 ORTHO05D000167 1.5e-07 60.8 171 29.8
QL02p082090 Quercus lobata HOM05D000003 ORTHO05D000167 1.5e-07 60.8 216 25.5
Atru.chr12.2026 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-07 60.5 214 27.6
CANSAT11G2397 Cannabis sativa HOM05D000003 ORTHO05D000167 2.0e-07 60.5 239 22.6
Atru.chr11.167 Acer truncatum HOM05D000003 ORTHO05D000006 3.4e-07 59.7 311 22.5
COL.COLO4_20252 Corchorus olitorius HOM05D000003 ORTHO05D007254 3.4e-07 59.7 240 24.2
Atru.chr11.1423 Acer truncatum HOM05D000003 ORTHO05D000167 4.5e-07 59.3 216 26.4
Atru.chr7.862 Acer truncatum HOM05D000003 ORTHO05D000167 4.5e-07 59.3 93 38.7
QL03p043669 Quercus lobata HOM05D000003 ORTHO05D000167 4.5e-07 59.3 81 33.3
Sed0007608 Sechium edule HOM05D000003 ORTHO05D000006 4.5e-07 59.3 209 25.4
Atru.chr8.96 Acer truncatum HOM05D000003 ORTHO05D000167 5.8e-07 58.9 86 39.5
Psat2g148120 Pisum sativum HOM05D000003 ORTHO05D000004 5.8e-07 58.9 221 25.8
QL03p040865 Quercus lobata HOM05D000003 ORTHO05D000004 5.8e-07 58.9 135 29.6
Atru.chr3.843 Acer truncatum HOM05D000003 ORTHO05D000167 7.6e-07 58.5 109 36.7
Atru.chr9.674 Acer truncatum HOM05D000003 ORTHO05D000004 7.6e-07 58.5 251 26.3
CANSAT78G2409 Cannabis sativa HOM05D000003 ORTHO05D000004 7.6e-07 58.5 251 22.7
CSS0014223 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 1.0e-06 58.2 48 52.1
CSS0046159 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 1.0e-06 58.2 48 52.1
CANSAT25G1030 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-06 58.2 248 22.6
Sed0005803 Sechium edule HOM05D000003 ORTHO05D000167 1.0e-06 58.2 93 36.6
SGA_v2.0_scaffold58G20592 Striga asiatica HOM05D000003 ORTHO05D017149 1.0e-06 58.2 75 36.0
Atru.chr4.2116 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-06 57.8 166 29.5
Ciclev10007098m.g Citrus clementina HOM05D000003 ORTHO05D000167 1.3e-06 57.8 78 42.3
Manes.10G125312 Manihot esculenta HOM05D000003 ORTHO05D000167 1.3e-06 57.8 81 32.1
Prupe.4G249200 Prunus persica HOM05D000003 ORTHO05D000167 1.3e-06 57.8 204 27.9
Atru.chr2.1908 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-06 57.4 78 34.6
Atru.chr2.2201 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-06 57.4 313 23.3
Atru.chr3.1587 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-06 57.4 252 27.8
COL.COLO4_22308 Corchorus olitorius HOM05D000003 ORTHO05D017149 1.7e-06 57.4 236 25.8
FvH4_2g13111 Fragaria vesca HOM05D000003 ORTHO05D011274 1.7e-06 57.4 104 33.7
FAN24G1917 Fragaria x ananassa HOM05D000011 ORTHO05D000157 1.7e-06 57.4 104 33.7
CANSAT56G3498 Cannabis sativa HOM05D000003 ORTHO05D000167 2.2e-06 57.0 81 39.5
ClCG03G012470 Citrullus lanatus HOM05D016618 ORTHO05D017846 2.2e-06 57.0 212 29.2
Atru.chr1.3915 Acer truncatum HOM05D000003 ORTHO05D000167 2.9e-06 56.6 96 35.4
Atru.chr1.3957 Acer truncatum HOM05D000003 ORTHO05D000167 2.9e-06 56.6 87 40.2
Atru.chr9.146 Acer truncatum HOM05D000003 ORTHO05D000167 2.9e-06 56.6 86 39.5
Manes.06G094851 Manihot esculenta HOM05D000003 ORTHO05D000004 2.9e-06 56.6 239 28.5
Sed0027430 Sechium edule HOM05D000003 ORTHO05D000004 2.9e-06 56.6 112 27.7
Atru.chr12.386 Acer truncatum HOM05D000003 ORTHO05D000004 3.8e-06 56.2 145 25.5
EL10Ac9g22665 Beta vulgaris HOM05D000003 ORTHO05D000167 3.8e-06 56.2 102 36.3
Sed0005170 Sechium edule HOM05D000003 ORTHO05D000167 3.8e-06 56.2 119 32.8
Atru.chr10.149 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-06 55.8 307 24.1
Atru.chr13.1949 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-06 55.8 215 26.0
Atru.chr2.570 Acer truncatum HOM05D000003 ORTHO05D000167 4.9e-06 55.8 86 39.5
Atru.chr6.707 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-06 55.8 52 50.0
Atru.chr9.663 Acer truncatum HOM05D000003 ORTHO05D000167 4.9e-06 55.8 104 32.7
Atru.chr9.909 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-06 55.8 136 31.6
Atru.chr10.544 Acer truncatum HOM05D000003 ORTHO05D000004 6.4e-06 55.5 103 34.0
Atru.chr8.1143 Acer truncatum HOM05D000003 ORTHO05D000004 6.4e-06 55.5 88 36.4
EL10Ac7g16695 Beta vulgaris HOM05D000003 ORTHO05D000006 6.4e-06 55.5 142 28.2
CANSAT01G1765 Cannabis sativa HOM05D000003 ORTHO05D000167 6.4e-06 55.5 94 29.8
CANSAT64G1939 Cannabis sativa HOM05D000003 ORTHO05D000004 6.4e-06 55.5 141 33.3
QL04p079831 Quercus lobata HOM05D015023 ORTHO05D004093 6.4e-06 55.5 160 29.4
Sed0021352 Sechium edule HOM05D000003 ORTHO05D000167 6.4e-06 55.5 130 32.3
Atru.chr4.85 Acer truncatum HOM05D000003 ORTHO05D000167 8.4e-06 55.1 144 31.2
Atru.chr5.1534 Acer truncatum HOM05D000003 ORTHO05D000167 8.4e-06 55.1 81 39.5
PSO063G1632 Papaver somniferum HOM05D000003 ORTHO05D001026 8.4e-06 55.1 130 26.2
SEGI_32552 Sequoiadendron giganteum HOM05D000155 ORTHO05D000022 8.4e-06 55.1 89 38.2


User provided reference genes

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