Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.567 Acer truncatum HOM05D006100 ORTHO05D007539 4.1e-66 254.6 131 100.0
Ciclev10026748m.g Citrus clementina HOM05D006100 ORTHO05D007539 1.1e-34 150.2 134 61.9
Haze_15098 Corylus avellana HOM05D006100 ORTHO05D007539 2.1e-33 146.0 131 59.5
TWI09G0021 Tripterygium wilfordii HOM05D006100 ORTHO05D007539 8.7e-32 140.6 130 62.3
Thecc.01G036600 Theobroma cacao HOM05D006100 ORTHO05D007539 1.9e-31 139.4 132 61.4
Duzib147G1001 Durio zibethinus HOM05D006100 ORTHO05D007539 4.3e-31 138.3 132 60.6
COL.COLO4_22086 Corchorus olitorius HOM05D006100 ORTHO05D007539 2.8e-30 135.6 131 59.5
QL06p045927 Quercus lobata HOM05D006100 ORTHO05D007539 2.6e-28 129.0 133 57.9
Prupe.7G153900 Prunus persica HOM05D006100 ORTHO05D007539 2.9e-27 125.6 131 58.8
Cfa004303 Carpinus fangiana HOM05D006100 ORTHO05D007539 3.8e-27 125.2 142 53.5
THA.LOC104821276 Tarenaya hassleriana HOM05D006100 ORTHO05D007539 7.9e-25 117.5 132 53.8
MD15G1262900 Malus domestica HOM05D006100 ORTHO05D007539 2.3e-24 115.9 136 55.1
Gohir.A10G094900 Gossypium hirsutum HOM05D006100 ORTHO05D007539 2.5e-23 112.5 127 55.1
Sed0016253 Sechium edule HOM05D006100 ORTHO05D007539 3.3e-23 112.1 128 50.0
Dinv39980 Davidia involucrata HOM05D006100 ORTHO05D007539 5.6e-23 111.3 130 53.8
FAN23G1739 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.3e-22 110.2 134 52.2
Aqoxy6G01099 Aquilegia oxysepala HOM05D006100 ORTHO05D007539 1.6e-22 109.8 133 48.9
Actinidia19182 Actinidia chinensis HOM05D006100 ORTHO05D007539 2.1e-22 109.4 131 48.1
CSS0018588 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 2.8e-22 109.0 130 50.0
RcHm_v2.0_Chr2g0101751 Rosa chinensis HOM05D006100 ORTHO05D007539 2.8e-22 109.0 133 54.9
Lj2g0016254 Lotus japonicus HOM05D006100 ORTHO05D007539 4.8e-22 108.2 134 51.5
BcaB07g29655 Brassica carinata HOM05D006100 ORTHO05D007539 6.2e-22 107.8 131 53.4
CiPaw.02G017200 Carya illinoinensis HOM05D006100 ORTHO05D007539 6.2e-22 107.8 93 67.7
FAN19G2702 Fragaria x ananassa HOM05D006100 ORTHO05D007539 6.2e-22 107.8 134 52.2
FAN26G0501 Fragaria x ananassa HOM05D006100 ORTHO05D007539 8.1e-22 107.5 133 54.1
FAN28G1903 Fragaria x ananassa HOM05D006100 ORTHO05D007539 8.1e-22 107.5 127 54.3
FvH4_1g13390 Fragaria vesca HOM05D006100 ORTHO05D007539 1.1e-21 107.1 127 54.3
FAN19G3207 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.1e-21 107.1 127 54.3
MD02G1148600 Malus domestica HOM05D006100 ORTHO05D007539 1.1e-21 107.1 130 53.1
Phvul.002G029900 Phaseolus vulgaris HOM05D006100 ORTHO05D007539 1.1e-21 107.1 132 52.3
Gohir.A11G184500 Gossypium hirsutum HOM05D006100 ORTHO05D007539 1.4e-21 106.7 117 56.4
Duzib264G0645 Durio zibethinus HOM05D006100 ORTHO05D007539 1.8e-21 106.3 130 52.3
FvH4_1g13380 Fragaria vesca HOM05D006100 ORTHO05D007539 3.1e-21 105.5 134 51.5
AL8G44670 Arabidopsis lyrata HOM05D006100 ORTHO05D007539 4.0e-21 105.1 131 52.7
Sp2g29900 Schrenkiella parvula HOM05D006100 ORTHO05D007539 4.0e-21 105.1 129 52.7
Medtr5g020060 Medicago truncatula HOM05D006100 ORTHO05D007539 5.3e-21 104.8 130 49.2
Nn5g29589 Nelumbo nucifera HOM05D006100 ORTHO05D007539 6.9e-21 104.4 131 51.9
CiPaw.01G037400 Carya illinoinensis HOM05D006100 ORTHO05D007539 9.0e-21 104.0 127 54.3
Lalb_Chr09g0322441 Lupinus albus HOM05D006100 ORTHO05D007539 2.0e-20 102.8 132 50.8
Psat2g159960 Pisum sativum HOM05D006100 ORTHO05D007539 2.0e-20 102.8 130 50.0
AT5G66780 Arabidopsis thaliana HOM05D006100 ORTHO05D007539 3.4e-20 102.1 125 53.6
BolC7t43033H Brassica oleracea HOM05D006100 ORTHO05D007539 3.4e-20 102.1 129 53.5
Carub.0008s2773 Capsella rubella HOM05D006100 ORTHO05D007539 3.4e-20 102.1 108 58.3
VMungo1215G0978 Vigna mungo HOM05D006100 ORTHO05D007539 4.5e-20 101.7 132 50.8
BcaC06g34744 Brassica carinata HOM05D006100 ORTHO05D007539 1.0e-19 100.5 129 52.7
C07p25000 Brassica napus HOM05D006100 ORTHO05D007539 1.0e-19 100.5 129 52.7
arahy.Tifrunner.gnm1.ann1.L1JEHI Arachis hypogaea HOM05D006100 ORTHO05D007539 2.2e-19 99.4 138 47.8
Thhalv10005154m.g Eutrema salsugineum HOM05D006100 ORTHO05D007539 2.2e-19 99.4 129 51.2
arahy.Tifrunner.gnm1.ann1.IKK69W Arachis hypogaea HOM05D006100 ORTHO05D007539 2.9e-19 99.0 138 47.8
Gohir.D10G093000 Gossypium hirsutum HOM05D006100 ORTHO05D007539 2.9e-19 99.0 127 49.6
FAN23G0264 Fragaria x ananassa HOM05D006100 ORTHO05D007539 3.8e-19 98.6 98 57.1
RcHm_v2.0_Chr2g0101741 Rosa chinensis HOM05D006100 ORTHO05D007539 8.4e-19 97.4 136 48.5
BcaB02g09991 Brassica carinata HOM05D006100 ORTHO05D007539 1.1e-18 97.1 131 49.6
Rhsim08G0115500 Rhododendron simsii HOM05D006100 ORTHO05D007539 1.9e-18 96.3 129 47.3
Manes.01G135000 Manihot esculenta HOM05D006100 ORTHO05D007539 2.5e-18 95.9 112 55.4
A07p17150 Brassica napus HOM05D006100 ORTHO05D007539 3.2e-18 95.5 127 51.2
BraA07t29442Z Brassica rapa HOM05D006100 ORTHO05D007539 3.2e-18 95.5 127 51.2
MD15G1262800 Malus domestica HOM05D006100 ORTHO05D007539 3.2e-18 95.5 77 67.5
CARHR280920 Cardamine hirsuta HOM05D006100 ORTHO05D007539 4.2e-18 95.1 129 49.6
Lsat_1_v5_gn_4_148381 Lactuca sativa HOM05D006100 ORTHO05D007539 4.2e-18 95.1 126 50.8
TAR376G0804 Trochodendron aralioides HOM05D001794 ORTHO05D004177 5.5e-18 94.7 109 53.2
CsaV3_6G046200 Cucumis sativus L. HOM05D006100 ORTHO05D007539 9.3e-18 94.0 134 48.5
ECA232G0790 Erigeron canadensis HOM05D006100 ORTHO05D007539 2.1e-17 92.8 104 54.8
PGR119G0418 Punica granatum HOM05D006100 ORTHO05D007539 4.6e-17 91.7 127 51.2
BcaC03g18400 Brassica carinata HOM05D006100 ORTHO05D007539 7.9e-17 90.9 72 70.8
ClCG01G019510 Citrullus lanatus HOM05D006100 ORTHO05D007539 1.0e-16 90.5 134 47.0
HanXRQChr11g0324821 Helianthus annuus HOM05D006100 ORTHO05D007539 1.0e-16 90.5 99 58.6
PSO541G1538 Papaver somniferum HOM05D006100 ORTHO05D007539 1.0e-16 90.5 115 53.0
PSO675G2321 Papaver somniferum HOM05D006100 ORTHO05D007539 1.3e-16 90.1 132 48.5
Glyma.11G067900 Glycine max HOM05D006100 ORTHO05D007539 3.0e-16 89.0 132 48.5
CANSAT01G1084 Cannabis sativa HOM05D006100 ORTHO05D007539 6.7e-16 87.8 129 46.5
Nitab4.5_0003233g0010 Nicotiana tabacum HOM05D006100 ORTHO05D007539 6.7e-16 87.8 131 42.7
A02p44400 Brassica napus HOM05D006100 ORTHO05D007539 8.7e-16 87.4 128 50.8
BraA02t09357Z Brassica rapa HOM05D006100 ORTHO05D007539 8.7e-16 87.4 128 50.8
Oeu009416.1 Olea europaea HOM05D006100 ORTHO05D007539 8.7e-16 87.4 128 47.7
Oeu041448.1 Olea europaea HOM05D006100 ORTHO05D007539 8.7e-16 87.4 128 47.7
C02p64790 Brassica napus HOM05D006100 ORTHO05D007539 1.5e-15 86.7 66 72.7
BolC2t12540H Brassica oleracea HOM05D006100 ORTHO05D007539 1.5e-15 86.7 66 72.7
Cpa.g.sc6.110 Carica papaya HOM05D006100 ORTHO05D007539 1.5e-15 86.7 133 45.9
Aa31LG1G15340 Aethionema arabicum HOM05D006100 ORTHO05D007539 5.7e-15 84.7 73 67.1
MD02G1148700 Malus domestica HOM05D006100 ORTHO05D007539 5.7e-15 84.7 128 43.8
FAN26G1330 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.3e-14 83.6 68 66.2
PGR102G3048 Punica granatum HOM05D006100 ORTHO05D007539 1.6e-14 83.2 104 52.9
Eucgr.I02450 Eucalyptus grandis HOM05D006100 ORTHO05D007539 2.1e-14 82.8 136 42.6
Os03g0723400 Oryza sativa ssp. japonica HOM05D006100 ORTHO05D007539 2.4e-13 79.3 84 54.8
Glyma.16G140500 Glycine max HOM05D006100 ORTHO05D007539 5.3e-13 78.2 126 44.4
vmacro17841 Vaccinium macrocarpon HOM05D006100 ORTHO05D007539 5.3e-13 78.2 75 56.0
FAN28G0382 Fragaria x ananassa HOM05D006100 ORTHO05D007539 6.9e-13 77.8 65 64.6
MSTRG.2759 Avicennia marina HOM05D006100 ORTHO05D007539 9.0e-13 77.4 129 41.9
GSVIVG01018974001 Vitis vinifera HOM05D006100 ORTHO05D007539 4.5e-12 75.1 131 42.7
Gorai.011G102200 Gossypium raimondii HOM05D006100 ORTHO05D007539 5.9e-12 74.7 88 52.3
TPR.G34229 Trifolium pratense HOM05D006100 ORTHO05D007539 5.9e-12 74.7 112 46.4
Nitab4.5_0000136g0440 Nicotiana tabacum HOM05D006100 ORTHO05D007539 1.0e-11 73.9 161 35.4
Nitab4.5_0001385g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 1.3e-11 73.6 132 42.4
Nitab4.5_0000434g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 2.9e-11 72.4 133 42.9
Peaxi162Scf00515g00519 Petunia axillaris HOM05D006100 ORTHO05D007539 6.5e-11 71.2 132 41.7
MELO3C007824.2 Cucumis melo HOM05D006100 ORTHO05D007539 1.4e-10 70.1 93 49.5
Solyc02g062770.2 Solanum lycopersicum HOM05D006100 ORTHO05D007539 1.9e-10 69.7 121 39.7
DCAR_025920 Daucus carota HOM05D006100 ORTHO05D007539 3.2e-10 68.9 65 61.5
Prupe.7G153800 Prunus persica HOM05D006100 ORTHO05D007539 3.2e-10 68.9 136 38.2
Sopen02g013800 Solanum pennellii HOM05D006100 ORTHO05D007539 4.2e-10 68.6 120 39.2
CSS0029658 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 7.2e-10 67.8 111 44.1
Lj4g0020328 Lotus japonicus HOM05D006100 ORTHO05D007539 1.2e-09 67.0 128 40.6
Migut.H00995 Erythranthe guttata HOM05D006100 ORTHO05D007539 2.7e-09 65.9 135 40.0
SGA_v2.0_scaffold276G46633 Striga asiatica HOM05D006100 ORTHO05D007539 6.1e-09 64.7 144 38.2
AUR62004046 Chenopodium quinoa HOM05D006100 ORTHO05D007539 1.3e-08 63.5 138 36.2
CAN.G358.97 Capsicum annuum HOM05D006100 ORTHO05D007539 1.8e-08 63.2 126 37.3
HanXRQChr16g0530351 Helianthus annuus HOM05D006100 ORTHO05D007539 3.9e-08 62.0 117 36.8
PGSC0003DMG400015478 Solanum tuberosum HOM05D006100 ORTHO05D007539 3.9e-08 62.0 107 41.1
AUR62007561 Chenopodium quinoa HOM05D006100 ORTHO05D007539 1.5e-07 60.1 138 37.0
EL10Ac6g15568 Beta vulgaris HOM05D006100 ORTHO05D007539 3.3e-07 58.9 138 37.7
Peaxi162Scf00008g03716 Petunia axillaris HOM05D006100 ORTHO05D007539 3.3e-07 58.9 65 50.8
MBI16_g38642_MAGBIO Magnolia biondii HOM05D006100 ORTHO05D007539 9.7e-07 57.4 89 44.9
unitig_899.g14492 Utricularia gibba HOM05D006100 ORTHO05D007539 3.7e-06 55.5 105 40.0
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 8.2e-06 54.3 77 49.4


User provided reference genes

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