Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.563 Acer truncatum HOM05D003234 ORTHO05D003635 2.5e-50 201.8 104 100.0
Manes.01G134700 Manihot esculenta HOM05D003234 ORTHO05D003635 4.3e-34 147.9 105 75.2
Actinidia12120 Actinidia chinensis HOM05D003234 ORTHO05D003635 4.8e-33 144.4 105 74.3
Migut.H00998 Erythranthe guttata HOM05D003234 ORTHO05D003635 1.1e-32 143.3 105 69.5
Ciclev10026821m.g Citrus clementina HOM05D003234 ORTHO05D003635 1.8e-32 142.5 105 77.1
Actinidia36555 Actinidia chinensis HOM05D003234 ORTHO05D003635 2.4e-32 142.1 105 74.3
Thecc.01G037000 Theobroma cacao HOM05D003234 ORTHO05D003635 1.3e-30 136.3 105 68.6
MSTRG.23532 Avicennia marina HOM05D003234 ORTHO05D003635 2.2e-30 135.6 105 66.7
Gohir.D12G065100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.8e-30 134.8 105 67.6
Gorai.008G068300 Gossypium raimondii HOM05D003234 ORTHO05D003635 3.8e-30 134.8 105 67.6
CSS0031108 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 1.1e-29 133.3 105 67.6
Gorai.011G102100 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.2e-28 129.8 105 66.7
Gohir.A10G095000 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.5e-28 128.3 105 66.7
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 6.0e-28 127.5 104 63.5
Cc07_g09430 Coffea canephora HOM05D003234 ORTHO05D003635 1.0e-27 126.7 105 65.7
Gohir.D10G092900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.3e-27 126.3 105 65.7
CiPaw.02G016600 Carya illinoinensis HOM05D003234 ORTHO05D003635 1.8e-27 125.9 105 63.8
Hma1.2p1_0717F.1_g208130 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 3.0e-27 125.2 105 65.7
ECA246G3301 Erigeron canadensis HOM05D003234 ORTHO05D003635 3.9e-27 124.8 106 67.0
SGA_v2.0_scaffold276G46636 Striga asiatica HOM05D003234 ORTHO05D003635 1.9e-26 122.5 124 57.3
Sopen02g030060 Solanum pennellii HOM05D003234 ORTHO05D003635 2.5e-26 122.1 105 65.7
CAN.G358.101 Capsicum annuum HOM05D003234 ORTHO05D003635 7.4e-26 120.6 105 64.8
HanXRQChr15g0482261 Helianthus annuus HOM05D003234 ORTHO05D003635 1.3e-25 119.8 105 62.9
Lsat_1_v5_gn_3_77600 Lactuca sativa HOM05D003234 ORTHO05D003635 2.8e-25 118.6 104 62.5
Lj4g0023984 Lotus japonicus HOM05D003234 ORTHO05D003635 2.4e-24 115.5 105 61.9
GSVIVG01018978001 Vitis vinifera HOM05D003234 ORTHO05D003635 3.1e-24 115.2 105 62.9
CANSAT01G1184 Cannabis sativa HOM05D003234 ORTHO05D003635 7.2e-21 104.0 106 60.4
Dinv39975 Davidia involucrata HOM05D003234 ORTHO05D003635 9.3e-21 103.6 104 64.4
TPR.G34985 Trifolium pratense HOM05D003234 ORTHO05D003635 2.7e-20 102.1 105 57.1
Psat4g092120 Pisum sativum HOM05D003234 ORTHO05D003635 4.6e-20 101.3 105 56.2
Nn1g05018 Nelumbo nucifera HOM05D003234 ORTHO05D003635 6.1e-20 100.9 107 56.1
Lalb_Chr09g0322471 Lupinus albus HOM05D003234 ORTHO05D003635 2.3e-19 99.0 105 59.0
Gohir.A12G065000 Gossypium hirsutum HOM05D003234 ORTHO05D003635 5.1e-19 97.8 104 51.9
Glyma.01G175400 Glycine max HOM05D003234 ORTHO05D003635 4.3e-18 94.7 105 54.3
Glyma.11G067600 Glycine max HOM05D003234 ORTHO05D003635 1.6e-17 92.8 105 53.3
Eucgr.I02454 Eucalyptus grandis HOM05D003234 ORTHO05D003635 6.3e-17 90.9 105 48.6
Aqoxy5G01648 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 8.2e-17 90.5 104 52.9
Migut.L00515 Erythranthe guttata HOM05D003234 ORTHO05D003635 1.1e-16 90.1 105 48.6
arahy.Tifrunner.gnm1.ann1.F5AS58 Arachis hypogaea HOM05D003234 ORTHO05D003635 1.8e-16 89.4 107 57.0
arahy.Tifrunner.gnm1.ann1.WI3JHU Arachis hypogaea HOM05D003234 ORTHO05D003635 1.8e-16 89.4 107 57.0
SEGI_11040 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 4.1e-16 88.2 106 52.8
Phvul.002G029601 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 1.2e-15 86.7 105 49.5
ATR0733G120 Amborella trichopoda HOM05D003234 ORTHO05D003635 4.5e-15 84.7 106 51.9
Dinv26826 Davidia involucrata HOM05D003234 ORTHO05D003635 4.5e-15 84.7 53 79.2
Zm00001eb009770 Zea mays HOM05D003234 ORTHO05D003635 4.5e-15 84.7 107 50.5
Aqoxy6G01093 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 1.3e-14 83.2 107 52.3
Os03g0669600 Oryza sativa ssp. japonica HOM05D003234 ORTHO05D003635 1.2e-12 76.6 106 50.0
CDE04G0975 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 1.1e-10 70.1 64 62.5
MSTRG.25294 Avicennia marina HOM05D003234 ORTHO05D003635 4.3e-10 68.2 107 44.9
ClCG08G009600 Citrullus lanatus HOM05D003234 ORTHO05D003635 9.7e-10 67.0 107 43.9
MELO3C026549.2 Cucumis melo HOM05D003234 ORTHO05D003635 9.7e-10 67.0 107 43.9
CsaV3_6G031700 Cucumis sativus L. HOM05D003234 ORTHO05D003635 9.7e-10 67.0 107 43.9
SGA_v2.0_scaffold275G46578 Striga asiatica HOM05D003234 ORTHO05D003635 1.3e-09 66.6 107 44.9
QL06p045796 Quercus lobata HOM05D003234 ORTHO05D003635 1.7e-09 66.2 36 86.1
Hund05127 Selenicereus undatus HOM05D003234 ORTHO05D003635 1.7e-09 66.2 106 40.6
MSTRG.1123 Avicennia marina HOM05D003234 ORTHO05D003635 2.2e-09 65.9 107 40.2
A02p20490 Brassica napus HOM05D003234 ORTHO05D003635 2.2e-09 65.9 108 38.9
Migut.C00924 Erythranthe guttata HOM05D003234 ORTHO05D003635 2.2e-09 65.9 107 44.9
PGSC0003DMG400029411 Solanum tuberosum HOM05D003234 ORTHO05D003635 2.2e-09 65.9 107 45.8
SGA_v2.0_scaffold19G08601 Striga asiatica HOM05D003234 ORTHO05D003635 2.2e-09 65.9 107 45.8
MSTRG.22360 Avicennia marina HOM05D003234 ORTHO05D003635 3.7e-09 65.1 107 44.9
CDE02G2075 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 3.7e-09 65.1 106 42.5
ClCG00G002880 Citrullus lanatus HOM05D003234 ORTHO05D003635 3.7e-09 65.1 106 42.5
Eucgr.F03542 Eucalyptus grandis HOM05D003234 ORTHO05D003635 3.7e-09 65.1 107 43.9
PGR031G2527 Punica granatum HOM05D003234 ORTHO05D003635 3.7e-09 65.1 108 43.5
Sed0012631 Sechium edule HOM05D003234 ORTHO05D003635 3.7e-09 65.1 107 43.9
BcaC03g15650 Brassica carinata HOM05D003234 ORTHO05D003635 4.8e-09 64.7 111 42.3
Cc10_g00860 Coffea canephora HOM05D003234 ORTHO05D003635 4.8e-09 64.7 107 45.8
Duzib093G1967 Durio zibethinus HOM05D003234 ORTHO05D003635 4.8e-09 64.7 107 44.9
Migut.N03196 Erythranthe guttata HOM05D003234 ORTHO05D003635 4.8e-09 64.7 107 43.0
Hma1.2p1_1260F.1_g271060 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 4.8e-09 64.7 106 44.3
Solyc12g094510.2 Solanum lycopersicum HOM05D003234 ORTHO05D003635 4.8e-09 64.7 107 44.9
Sopen12g031400 Solanum pennellii HOM05D003234 ORTHO05D003635 4.8e-09 64.7 107 44.9
Glyma.06G019600 Glycine max HOM05D003234 ORTHO05D003635 6.3e-09 64.3 108 43.5
Gohir.A05G180900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 6.3e-09 64.3 107 44.9
Gohir.D05G183900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 6.3e-09 64.3 107 44.9
Gorai.009G189400 Gossypium raimondii HOM05D003234 ORTHO05D003635 6.3e-09 64.3 107 44.9
THA.LOC104809745 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 6.3e-09 64.3 107 44.9
BcaB02g07054 Brassica carinata HOM05D003234 ORTHO05D003635 8.2e-09 63.9 107 44.9
BraA02t07080Z Brassica rapa HOM05D003234 ORTHO05D003635 8.2e-09 63.9 109 42.2
Cpa.g.sc26.223 Carica papaya HOM05D003234 ORTHO05D003635 8.2e-09 63.9 107 44.9
Thhalv10019348m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 8.2e-09 63.9 107 43.9
Lalb_Chr01g0008381 Lupinus albus HOM05D003234 ORTHO05D003635 8.2e-09 63.9 106 43.4
Manes.05G140300 Manihot esculenta HOM05D003234 ORTHO05D003635 8.2e-09 63.9 107 45.8
THA.LOC104813762 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 8.2e-09 63.9 107 43.9
TPR.G38123 Trifolium pratense HOM05D003234 ORTHO05D003635 8.2e-09 63.9 108 42.6
unitig_21.g20148 Utricularia gibba HOM05D003234 ORTHO05D003635 8.2e-09 63.9 107 43.9
Actinidia37965 Actinidia chinensis HOM05D003234 ORTHO05D003635 1.1e-08 63.5 107 43.9
Dinv31919 Davidia involucrata HOM05D003234 ORTHO05D003635 1.1e-08 63.5 107 43.9
Potri.005G248300 Populus trichocarpa HOM05D003234 ORTHO05D003635 1.1e-08 63.5 107 43.9
AT1G76185 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 1.4e-08 63.2 107 44.9
arahy.Tifrunner.gnm1.ann1.G2HAI2 Arachis hypogaea HOM05D003234 ORTHO05D003635 1.4e-08 63.2 108 42.6
C02p33350 Brassica napus HOM05D003234 ORTHO05D003635 1.4e-08 63.2 109 42.2
Carub.0001s1993 Capsella rubella HOM05D003234 ORTHO05D003635 1.4e-08 63.2 107 43.9
Carub.0002s2308 Capsella rubella HOM05D003234 ORTHO05D003635 1.4e-08 63.2 107 43.9
CiPaw.08G071600 Carya illinoinensis HOM05D003234 ORTHO05D003635 1.4e-08 63.2 108 44.4
Glyma.04G019300 Glycine max HOM05D003234 ORTHO05D003635 1.4e-08 63.2 108 42.6
Lj1g0024220 Lotus japonicus HOM05D003234 ORTHO05D003635 1.4e-08 63.2 108 41.7
Manes.18G007200 Manihot esculenta HOM05D003234 ORTHO05D003635 1.4e-08 63.2 107 44.9
Nn6g31830 Nelumbo nucifera HOM05D003234 ORTHO05D003635 1.4e-08 63.2 108 44.4
Phvul.009G021200 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 1.4e-08 63.2 108 41.7
TWI12G0861 Tripterygium wilfordii HOM05D003234 ORTHO05D003635 1.4e-08 63.2 107 43.9
VMungo1309G2978 Vigna mungo HOM05D003234 ORTHO05D003635 1.4e-08 63.2 108 42.6
Aa31LG7G4760 Aethionema arabicum HOM05D003234 ORTHO05D003635 1.8e-08 62.8 107 43.0
BcaC08g47113 Brassica carinata HOM05D003234 ORTHO05D003635 1.8e-08 62.8 107 43.9
CARHR020910 Cardamine hirsuta HOM05D003234 ORTHO05D003635 1.8e-08 62.8 109 43.1
Thhalv10009165m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 1.8e-08 62.8 107 43.0
Nitab4.5_0000588g0270 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.8e-08 62.8 107 43.0
Sp1g18170 Schrenkiella parvula HOM05D003234 ORTHO05D003635 1.8e-08 62.8 107 43.0
Sed0016414 Sechium edule HOM05D003234 ORTHO05D003635 1.8e-08 62.8 107 42.1
Thecc.08G055600 Theobroma cacao HOM05D003234 ORTHO05D003635 1.8e-08 62.8 107 43.9
CANSAT25G0014 Cannabis sativa HOM05D003234 ORTHO05D003635 2.4e-08 62.4 107 43.0
CDE02G3043 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 2.4e-08 62.4 53 64.2
Medtr3g115080 Medicago truncatula HOM05D003234 ORTHO05D003635 2.4e-08 62.4 109 42.2
Nitab4.5_0007869g0020 Nicotiana tabacum HOM05D003234 ORTHO05D003635 2.4e-08 62.4 107 43.0
A07p28600 Brassica napus HOM05D003234 ORTHO05D003635 3.1e-08 62.0 107 43.0
BNapus_Darmor_BZH_scaffold_170p00030 Brassica napus HOM05D003234 ORTHO05D003635 3.1e-08 62.0 107 43.0
Duzib116G0672 Durio zibethinus HOM05D003234 ORTHO05D003635 3.1e-08 62.0 107 43.9
Nitab4.5_0000699g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 3.1e-08 62.0 107 43.0
Oeu011320.1 Olea europaea HOM05D003234 ORTHO05D003635 3.1e-08 62.0 107 43.0
Sp5g31330 Schrenkiella parvula HOM05D003234 ORTHO05D003635 3.1e-08 62.0 107 42.1
arahy.Tifrunner.gnm1.ann1.VFC9DI Arachis hypogaea HOM05D003234 ORTHO05D003635 4.1e-08 61.6 107 41.1
BcaB07g32048 Brassica carinata HOM05D003234 ORTHO05D003635 4.1e-08 61.6 107 43.0
BcaC05g25956 Brassica carinata HOM05D003234 ORTHO05D003635 4.1e-08 61.6 107 43.0
A06p16500 Brassica napus HOM05D003234 ORTHO05D003635 4.1e-08 61.6 107 43.0
C05p19050 Brassica napus HOM05D003234 ORTHO05D003635 4.1e-08 61.6 107 43.0
BraA06t24756Z Brassica rapa HOM05D003234 ORTHO05D003635 4.1e-08 61.6 107 43.0
BraA07t30501Z Brassica rapa HOM05D003234 ORTHO05D003635 4.1e-08 61.6 106 42.5
Gohir.A02G083600 Gossypium hirsutum HOM05D003234 ORTHO05D003635 4.1e-08 61.6 107 42.1
Aqoxy5G01058 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 5.3e-08 61.2 109 39.4
AT1G20460 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 5.3e-08 61.2 107 43.0
CAN.G208.7 Capsicum annuum HOM05D003234 ORTHO05D003635 5.3e-08 61.2 107 42.1
CiPaw.07G140700 Carya illinoinensis HOM05D003234 ORTHO05D003635 5.3e-08 61.2 107 42.1
MD15G1003700 Malus domestica HOM05D003234 ORTHO05D003635 5.3e-08 61.2 108 38.0
Prupe.1G356200 Prunus persica HOM05D003234 ORTHO05D003635 5.3e-08 61.2 107 40.2
Nitab4.5_0002710g0120 Nicotiana tabacum HOM05D003234 ORTHO05D003635 9.1e-08 60.5 109 42.2
C06p32180 Brassica napus HOM05D003234 ORTHO05D003635 1.2e-07 60.1 107 42.1
Duzib041G0372 Durio zibethinus HOM05D003234 ORTHO05D003635 1.2e-07 60.1 107 43.0
Peaxi162Scf00400g00314 Petunia axillaris HOM05D003234 ORTHO05D003635 1.2e-07 60.1 109 41.3
Actinidia15481 Actinidia chinensis HOM05D003234 ORTHO05D003635 1.5e-07 59.7 106 40.6
EL10Ac1g02011 Beta vulgaris HOM05D003234 ORTHO05D003635 1.5e-07 59.7 106 39.6
FAN15G0717 Fragaria x ananassa HOM05D003234 ORTHO05D003635 1.5e-07 59.7 107 39.3
FAN20G3055 Fragaria x ananassa HOM05D003234 ORTHO05D003635 1.5e-07 59.7 107 39.3
FAN27G0038 Fragaria x ananassa HOM05D003234 ORTHO05D003635 1.5e-07 59.7 107 39.3
Gohir.D02G099100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.5e-07 59.7 107 41.1
Gorai.005G112900 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.5e-07 59.7 107 41.1
Potri.002G013000 Populus trichocarpa HOM05D003234 ORTHO05D003635 1.5e-07 59.7 107 42.1
RcHm_v2.0_Chr6g0304061 Rosa chinensis HOM05D003234 ORTHO05D003635 1.5e-07 59.7 107 39.3
unitig_744.g24608 Utricularia gibba HOM05D003234 ORTHO05D003635 1.5e-07 59.7 109 40.4
MD08G1004300 Malus domestica HOM05D003234 ORTHO05D003635 2.0e-07 59.3 108 38.0
Peaxi162Scf01481g00038 Petunia axillaris HOM05D003234 ORTHO05D003635 2.0e-07 59.3 106 42.5
GSVIVG01008697001 Vitis vinifera HOM05D003234 ORTHO05D003635 2.0e-07 59.3 107 43.9
FvH4_2g37670 Fragaria vesca HOM05D003234 ORTHO05D003635 2.6e-07 58.9 107 39.3
Psat0s3811g0040 Pisum sativum HOM05D003234 ORTHO05D003635 2.6e-07 58.9 108 41.7
Rhsim06G0008900 Rhododendron simsii HOM05D003234 ORTHO05D003635 2.6e-07 58.9 107 42.1
Sc02g0009000 Simmondsia chinensis HOM05D003234 ORTHO05D003635 2.6e-07 58.9 107 40.2
Gohir.A05G254800 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.4e-07 58.5 107 40.2
Nitab4.5_0000337g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 3.4e-07 58.5 109 41.3
CDE09G0257 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 4.5e-07 58.2 106 38.7
Ciclev10002915m.g Citrus clementina HOM05D003234 ORTHO05D003635 4.5e-07 58.2 107 41.1
Gorai.009G267900 Gossypium raimondii HOM05D003234 ORTHO05D003635 4.5e-07 58.2 107 37.4
Peaxi162Scf00515g00521 Petunia axillaris HOM05D003234 ORTHO05D003635 4.5e-07 58.2 68 54.4
SEGI_02230 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 4.5e-07 58.2 68 51.5
Solyc04g082210.3 Solanum lycopersicum HOM05D003234 ORTHO05D003635 4.5e-07 58.2 109 42.2
CAN.G311.99 Capsicum annuum HOM05D003234 ORTHO05D003635 5.9e-07 57.8 109 43.1
Gohir.D05G256400 Gossypium hirsutum HOM05D003234 ORTHO05D003635 7.7e-07 57.4 107 39.3
Lalb_Chr19g0131711 Lupinus albus HOM05D003234 ORTHO05D003635 7.7e-07 57.4 110 41.8
PGSC0003DMG401009896 Solanum tuberosum HOM05D003234 ORTHO05D003635 7.7e-07 57.4 109 42.2
MBI05_g27809_MAGBIO Magnolia biondii HOM05D003234 ORTHO05D003635 1.3e-06 56.6 106 40.6
Sopen04g035840 Solanum pennellii HOM05D003234 ORTHO05D003635 1.3e-06 56.6 109 41.3
SalBow6G3231 Salvia bowleyana HOM05D003234 ORTHO05D003635 1.7e-06 56.2 107 42.1
Lsat_1_v5_gn_5_39760 Lactuca sativa HOM05D003234 ORTHO05D003635 5.0e-06 54.7 106 40.6


User provided reference genes

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