Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 6278.0 3187 100.0
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 4366.2 3205 70.5
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 3665.2 3211 60.0
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 3572.3 3210 59.0
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 3521.9 3214 58.5
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 3521.5 3217 58.4
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 3494.9 3226 58.3
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 3486.0 3209 58.0
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 3483.7 3199 57.8
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 3444.4 3328 56.4
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 3436.7 3255 56.8
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 3424.4 3269 56.7
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 3389.7 3214 57.0
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 3325.8 3210 56.1
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 3273.4 3259 55.1
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 3268.4 3880 48.9
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 3258.4 3214 55.7
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 3254.2 3257 54.9
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 3243.8 3259 54.7
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 3182.9 3220 53.9
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 3182.1 2857 59.0
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 3122.0 2976 57.1
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 3113.2 2934 57.3
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 3070.0 3306 52.4
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 3050.0 3212 51.5
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 3028.0 3212 51.3
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 3023.4 3253 51.5
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 3003.4 3206 51.1
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 2958.3 3213 50.7
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 2957.9 3211 50.8
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 2934.1 3213 50.6
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 2920.2 3492 48.6
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 2897.1 3224 49.6
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 2861.2 3216 48.9
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 2815.8 3216 48.9
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 2803.1 3194 49.0
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 2801.2 3226 48.5
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 2779.2 3212 48.5
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 2779.2 3212 48.5
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2766.5 3216 48.2
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 2758.4 3224 49.0
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 2757.2 3199 48.5
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 2740.3 3090 49.6
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2737.6 3212 48.1
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2737.6 3238 47.3
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 2722.2 3247 48.0
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 2711.4 3248 47.7
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 2706.8 3268 47.0
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2666.3 3250 47.1
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2655.6 3233 46.4
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 2652.5 3029 48.6
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 2595.5 3244 45.7
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 2594.3 3234 47.2
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 2585.8 3263 46.1
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 2568.5 3259 45.7
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 2566.2 3206 46.7
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 2562.3 2235 61.1
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 2549.2 3277 44.7
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 2548.9 3246 45.9
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 2548.9 3221 47.1
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 2546.5 3232 46.9
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 2542.7 2909 49.1
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 2523.8 3250 45.5
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 2505.7 3175 46.6
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 2474.1 3256 44.7
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 2422.9 3301 43.7
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 2397.9 2511 51.5
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 2385.5 3176 44.2
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 2364.0 2234 56.4
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 2360.5 2334 54.8
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 0.0e+00 2357.0 2911 46.4
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 2162.5 3309 40.9
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 0.0e+00 2062.0 2841 42.6
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1909.4 1715 57.9
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1859.0 3275 37.0
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 0.0e+00 1838.5 2596 43.2
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 1824.3 1775 54.5
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1815.8 1274 72.4
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 1741.5 1439 60.9
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1717.2 1355 64.3
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1714.5 1670 53.8
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 1645.6 1373 62.6
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1580.1 1212 66.7
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1567.0 1334 60.5
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1558.9 1346 60.4
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1523.8 1590 52.9
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1516.9 1734 48.0
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 0.0e+00 1514.2 3213 33.5
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1371.3 1207 57.9
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 0.0e+00 1359.7 2549 36.6
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 0.0e+00 1187.9 2056 37.1
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1180.6 1880 39.3
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 0.0e+00 1174.8 1881 37.6
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 0.0e+00 1145.2 1411 48.3
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 0.0e+00 1085.5 1868 36.7
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 3.3e-302 1043.5 1896 36.4
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 4.5e-299 1033.1 1874 36.2
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 8.2e-293 1012.3 1311 44.0
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.4e-287 995.0 1105 50.0
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 3.6e-280 970.3 1595 39.5
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 2.3e-258 897.9 1731 35.4
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 6.0e-251 873.2 590 73.9
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 2.9e-213 748.0 652 59.8
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 1.8e-199 702.2 960 43.5
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 2.2e-192 678.7 2143 28.6
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 8.8e-186 656.8 885 43.2
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 4.2e-180 637.9 880 43.6
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.2e-179 636.3 1314 33.9
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.6e-174 619.4 1303 33.6
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 1.5e-172 612.8 1320 33.0
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 2.7e-171 608.6 937 40.3
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 2.6e-161 575.5 940 40.7
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 2.4e-159 568.9 460 64.3
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 6.1e-155 554.3 926 36.2
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 7.0e-151 540.8 865 39.0
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 1.8e-143 516.2 1218 31.5
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 7.8e-142 510.8 881 35.3
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 1.3e-120 440.3 1252 29.2
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 6.9e-114 417.9 461 46.2
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 1.6e-99 370.2 679 34.6
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 4.5e-97 362.1 332 58.4
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 5.5e-95 355.1 1228 26.8
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 5.1e-93 348.6 216 79.2
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 2.9e-88 332.8 224 71.4
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 4.1e-82 312.4 434 43.3
Cpa.g.sc15.79 Carica papaya HOM05D004524 ORTHO05D005477 1.3e-80 307.4 553 38.0
CSS0018787 Camellia sinensis var. sinensis HOM05D004524 ORTHO05D005477 5.9e-73 282.0 381 45.9
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 7.2e-63 248.4 187 66.3
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 6.1e-62 245.4 236 57.2
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 4.4e-52 212.6 998 23.4
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 3.7e-51 209.5 154 69.5
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 1.1e-50 208.0 146 69.2
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 1.4e-50 207.6 147 68.7
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 1.8e-50 207.2 146 69.2
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 7.7e-49 201.8 156 64.7
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 1.3e-43 184.5 105 85.7
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 1.2e-38 167.9 210 47.6
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 3.6e-38 166.4 173 53.8
Cpa.g.sc15.83 Carica papaya HOM05D004524 ORTHO05D005477 1.3e-35 157.9 190 49.5
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-34 154.5 632 24.4
SEGI_31558 Sequoiadendron giganteum HOM05D057139 ORTHO05D037600 2.0e-33 150.6 617 25.1
Thhalv10006113m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 2.9e-32 146.7 330 32.7
Glyma.02G062100 Glycine max HOM05D004524 ORTHO05D005477 1.5e-31 144.4 200 38.0
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 1.6e-30 141.0 343 31.5
Glyma.02G062000 Glycine max HOM05D004524 ORTHO05D005477 1.8e-29 137.5 241 34.0
arahy.Tifrunner.gnm1.ann1.Y36QTI Arachis hypogaea HOM05D004524 ORTHO05D005477 3.4e-28 133.3 225 32.9
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 1.9e-26 127.5 111 58.6
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 6.0e-25 122.5 194 41.2
Cpa.g.sc15.82 Carica papaya HOM05D004524 ORTHO05D005477 7.8e-25 122.1 144 52.1
SEGI_01312 Sequoiadendron giganteum HOM05D057139 ORTHO05D037600 1.1e-23 118.2 961 23.0
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 4.3e-23 116.3 73 74.0
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 9.5e-23 115.2 61 91.8
CBR_g36536 Chara braunii HOM05D000019 ORTHO05D000048 7.5e-20 105.5 387 22.7
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 9.2e-18 98.6 199 33.7
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 2.1e-14 87.4 783 20.3
Actinidia04030 Actinidia chinensis HOM05D004524 ORTHO05D005477 2.8e-14 87.0 73 61.6
Psat3g094640 Pisum sativum HOM05D004524 ORTHO05D005477 4.7e-14 86.3 105 47.6
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 1.5e-12 81.3 102 43.1
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 2.0e-12 80.9 119 43.7
SEGI_30472 Sequoiadendron giganteum HOM05D004524 ORTHO05D037600 3.7e-11 76.6 174 29.3
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 7.1e-10 72.4 42 83.3
CiPaw.06G000600 Carya illinoinensis HOM05D002653 ORTHO05D002623 9.2e-10 72.0 767 18.8
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 3.5e-09 70.1 959 19.8
QL04p064964 Quercus lobata HOM05D002653 ORTHO05D002623 3.5e-09 70.1 824 18.0
TAR624G1146 Trochodendron aralioides HOM05D002653 ORTHO05D002623 1.0e-08 68.6 746 17.6
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 5.1e-08 66.2 475 18.9
CSS0041142 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 2.5e-07 63.9 807 18.1
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 4.3e-07 63.2 409 21.5
VMungo0720G0368 Vigna mungo HOM05D004524 ORTHO05D051592 4.3e-07 63.2 79 39.2
RcHm_v2.0_Chr2g0148311 Rosa chinensis HOM05D002653 ORTHO05D002623 7.3e-07 62.4 476 20.6
GSVIVG01019366001 Vitis vinifera HOM05D002653 ORTHO05D002623 9.5e-07 62.0 757 17.2
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 1.6e-06 61.2 474 20.5
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.6e-06 61.2 474 20.5
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.6e-06 61.2 474 20.5
Eucgr.K01355 Eucalyptus grandis HOM05D002653 ORTHO05D002623 2.8e-06 60.5 347 23.1
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 4.7e-06 59.7 396 20.7
FAN09G4442 Fragaria x ananassa HOM05D002653 ORTHO05D002623 4.7e-06 59.7 474 20.5
Lj4C825G3 Lonicera japonica HOM05D002653 ORTHO05D002623 8.1e-06 58.9 525 20.4


User provided reference genes

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