Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 3.0e-122 441.8 218 100.0
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 7.5e-113 410.6 218 90.8
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.3e-112 409.8 236 86.9
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 1.7e-112 409.5 218 91.3
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 3.1e-111 405.2 219 90.4
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 4.1e-111 404.8 218 89.4
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 2.3e-109 399.1 220 88.6
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 3.3e-108 395.2 218 88.1
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 8.0e-107 390.6 221 86.0
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 1.0e-106 390.2 220 87.3
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.8e-106 389.4 221 85.5
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.3e-106 389.0 221 85.1
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 5.2e-106 387.9 220 85.9
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 6.8e-106 387.5 220 85.9
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 8.9e-106 387.1 221 85.1
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 8.9e-106 387.1 220 86.4
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 2.0e-105 386.0 218 84.9
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 5.7e-105 384.4 218 87.2
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 9.8e-105 383.6 222 84.7
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.3e-104 383.3 220 85.0
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 2.2e-104 382.5 220 85.9
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 2.9e-104 382.1 220 85.5
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 1.1e-103 380.2 220 85.5
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 3.2e-103 378.6 220 84.1
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 3.2e-103 378.6 220 84.5
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 5.4e-103 377.9 220 85.0
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 9.2e-103 377.1 218 83.9
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 9.2e-103 377.1 220 83.2
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 1.2e-102 376.7 221 83.7
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 1.2e-102 376.7 220 85.0
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 1.6e-102 376.3 218 83.0
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 2.0e-102 375.9 221 83.3
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 3.5e-102 375.2 220 84.1
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 4.6e-102 374.8 221 82.8
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 7.8e-102 374.0 218 82.6
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 3.0e-101 372.1 218 82.1
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 3.0e-101 372.1 218 81.2
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 6.6e-101 370.9 220 85.5
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 6.6e-101 370.9 219 82.2
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 8.6e-101 370.5 220 84.1
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.1e-100 370.2 220 84.1
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 1.9e-100 369.4 219 81.3
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 2.5e-100 369.0 218 82.6
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 3.3e-100 368.6 218 82.1
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 4.3e-100 368.2 218 82.1
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 7.3e-100 367.5 220 82.7
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 2.1e-99 365.9 220 81.4
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 2.8e-99 365.5 219 81.3
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 4.7e-99 364.8 220 81.8
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 1.0e-98 363.6 220 82.7
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 1.4e-98 363.2 220 82.7
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.8e-98 362.8 219 80.8
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 1.8e-98 362.8 220 82.3
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 1.8e-98 362.8 220 82.7
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 4.0e-98 361.7 220 80.5
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 5.2e-98 361.3 219 79.9
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 1.5e-97 359.8 219 80.4
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 1.5e-97 359.8 220 79.5
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 2.0e-97 359.4 220 80.5
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 2.6e-97 359.0 218 78.4
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 7.5e-97 357.5 192 88.5
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 9.8e-97 357.1 192 88.5
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 3.7e-96 355.1 220 78.2
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 4.9e-96 354.8 210 81.4
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 4.1e-95 351.7 219 78.5
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 4.1e-95 351.7 196 86.2
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 5.4e-95 351.3 193 86.5
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 1.2e-94 350.1 220 80.9
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 1.6e-94 349.7 319 60.5
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.7e-94 349.0 196 87.8
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 3.5e-94 348.6 219 79.0
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 3.5e-94 348.6 219 79.0
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 4.6e-94 348.2 220 77.7
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 4.6e-94 348.2 220 77.7
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 7.8e-94 347.4 220 79.1
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 1.0e-93 347.1 229 75.5
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 2.3e-93 345.9 221 77.4
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 3.9e-93 345.1 219 76.7
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 3.9e-93 345.1 192 85.4
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 5.0e-93 344.7 219 77.2
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 5.0e-93 344.7 222 77.5
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 6.6e-93 344.4 219 78.5
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 6.6e-93 344.4 219 78.5
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 1.1e-92 343.6 221 77.4
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.1e-92 343.6 219 77.2
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 1.5e-92 343.2 199 85.4
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 4.3e-92 341.7 219 78.1
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 4.3e-92 341.7 192 84.9
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 1.2e-91 340.1 192 86.5
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 2.1e-91 339.3 219 77.2
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 2.3e-90 335.9 232 73.3
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 4.0e-90 335.1 221 76.5
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 6.8e-90 334.3 219 76.7
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 8.9e-90 334.0 221 76.0
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.5e-89 333.2 194 83.0
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 3.4e-89 332.0 193 82.4
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 1.3e-88 330.1 198 83.3
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 1.1e-87 327.0 219 72.1
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 7.1e-87 324.3 220 72.7
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 9.2e-87 323.9 299 58.9
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 6.0e-86 321.2 208 77.4
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.1e-84 317.0 221 72.9
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.1e-84 317.0 221 72.9
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.5e-84 316.6 193 79.8
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 1.5e-84 316.6 195 80.0
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 6.2e-83 311.2 210 73.3
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 6.8e-82 307.8 221 72.4
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 4.4e-81 305.1 179 83.2
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.7e-80 303.1 288 57.6
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 1.1e-79 300.4 220 66.8
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 5.1e-77 291.6 204 71.6
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 1.2e-75 287.0 219 63.5
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 1.6e-75 286.6 192 73.4
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 1.5e-73 280.0 178 78.1
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 2.0e-73 279.6 224 65.6
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 2.0e-73 279.6 224 65.6
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 4.4e-73 278.5 218 62.8
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 7.6e-73 277.7 214 64.0
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 4.9e-72 275.0 214 65.4
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 6.4e-72 274.6 219 65.8
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 1.4e-71 273.5 172 76.7
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 1.4e-71 273.5 163 83.4
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 1.9e-71 273.1 169 79.3
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 1.5e-68 263.5 221 58.4
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 9.6e-68 260.8 218 60.6
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 2.4e-66 256.1 158 81.0
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 9.9e-65 250.8 195 65.6
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 3.8e-64 248.8 222 58.1
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 1.4e-63 246.9 221 56.1
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 4.2e-63 245.4 192 62.5
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.5e-60 236.9 195 64.6
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.9e-60 236.5 169 72.8
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 9.0e-50 201.1 183 59.6
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 4.5e-49 198.7 219 50.7
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 4.5e-49 198.7 162 61.7
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 3.2e-47 192.6 152 61.8
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 1.9e-44 183.3 93 91.4
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 2.7e-38 162.9 247 43.7
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 1.5e-36 157.1 221 38.5
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 1.1e-34 151.0 242 36.0
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.6e-33 146.4 84 85.7
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 4.5e-33 145.6 100 73.0
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 2.7e-30 136.3 222 36.5
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 6.1e-30 135.2 80 82.5
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 6.7e-29 131.7 84 71.4
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.7e-24 117.1 141 48.2
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 3.9e-21 105.9 93 55.9
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 4.1e-10 69.3 149 34.9
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 3.2e-07 59.7 205 25.4


User provided reference genes

Program Settings