Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.4204 Acer truncatum HOM05D000510 ORTHO05D001548 3.0e-75 285.0 139 100.0
Ciclev10029951m.g Citrus clementina HOM05D000510 ORTHO05D001548 3.6e-28 128.6 91 65.9
PGR102G2382 Punica granatum HOM05D000510 ORTHO05D001548 4.1e-24 115.2 112 52.7
Lalb_Chr08g0231691 Lupinus albus HOM05D000510 ORTHO05D001548 2.3e-22 109.4 92 57.6
Glyma.11G230600 Glycine max HOM05D000510 ORTHO05D001548 3.9e-22 108.6 82 58.5
Nn2g10844 Nelumbo nucifera HOM05D000510 ORTHO05D001548 1.8e-19 99.8 83 57.8
CANSAT56G3007 Cannabis sativa HOM05D000510 ORTHO05D001548 3.1e-19 99.0 92 51.1
ClCG03G000720 Citrullus lanatus HOM05D000510 ORTHO05D001548 4.9e-17 91.7 122 37.7
CSS0014398 Camellia sinensis var. sinensis HOM05D000510 ORTHO05D001548 6.4e-17 91.3 92 52.2
Prupe.6G056600 Prunus persica HOM05D000510 ORTHO05D001548 1.4e-16 90.1 125 39.2
Manes.10G012100 Manihot esculenta HOM05D000510 ORTHO05D001548 1.9e-16 89.7 89 51.7
Manes.07G129800 Manihot esculenta HOM05D000510 ORTHO05D001548 2.4e-16 89.4 77 51.9
CsaV3_1G036220 Cucumis sativus L. HOM05D000510 ORTHO05D001548 3.2e-16 89.0 154 35.1
Phvul.001G243800 Phaseolus vulgaris HOM05D000510 ORTHO05D001548 5.4e-16 88.2 82 54.9
Thecc.09G300300 Theobroma cacao HOM05D000510 ORTHO05D001548 7.1e-16 87.8 58 70.7
RcHm_v2.0_Chr5g0065501 Rosa chinensis HOM05D000510 ORTHO05D001548 1.2e-15 87.0 118 39.0
RcHm_v2.0_Chr5g0069861 Rosa chinensis HOM05D000510 ORTHO05D001548 1.2e-15 87.0 118 39.0
TWI79G1160 Tripterygium wilfordii HOM05D000510 ORTHO05D001548 1.6e-15 86.7 59 66.1
THA.LOC104824316 Tarenaya hassleriana HOM05D000510 ORTHO05D001548 2.7e-15 85.9 86 47.7
Sc21g0006370 Simmondsia chinensis HOM05D000510 ORTHO05D001548 3.5e-15 85.5 91 46.2
Cpa.g.sc112.9 Carica papaya HOM05D000510 ORTHO05D001548 4.6e-15 85.1 59 66.1
MELO3C020544.2 Cucumis melo HOM05D000510 ORTHO05D001548 4.6e-15 85.1 122 37.7
GSVIVG01024731001 Vitis vinifera HOM05D000510 ORTHO05D001548 4.6e-15 85.1 125 37.6
Glyma.18G026700 Glycine max HOM05D000510 ORTHO05D001548 7.8e-15 84.3 82 51.2
QL05p072717 Quercus lobata HOM05D000510 ORTHO05D001548 7.8e-15 84.3 61 60.7
QL01p038489 Quercus lobata HOM05D000510 ORTHO05D001548 1.3e-14 83.6 59 61.0
Eucgr.B02249 Eucalyptus grandis HOM05D000510 ORTHO05D001548 2.3e-14 82.8 141 36.2
Duzib168G1958 Durio zibethinus HOM05D000510 ORTHO05D001548 5.1e-14 81.6 58 67.2
CiPaw.14G058900 Carya illinoinensis HOM05D000510 ORTHO05D001548 6.6e-14 81.3 130 33.8
TPR.G11211 Trifolium pratense HOM05D000510 ORTHO05D001548 6.6e-14 81.3 98 40.8
arahy.Tifrunner.gnm1.ann1.00QF5S Arachis hypogaea HOM05D000510 ORTHO05D001548 8.7e-14 80.9 105 44.8
Lalb_Chr04g0250591 Lupinus albus HOM05D000510 ORTHO05D001548 8.7e-14 80.9 101 45.5
Duzib170G0371 Durio zibethinus HOM05D000510 ORTHO05D001548 1.1e-13 80.5 58 62.1
Duzib106G0055 Durio zibethinus HOM05D000510 ORTHO05D001548 1.5e-13 80.1 92 45.7
LjContig00357g0027901 Lotus japonicus HOM05D000510 ORTHO05D001548 1.5e-13 80.1 82 50.0
CSS0012638 Camellia sinensis var. sinensis HOM05D000510 ORTHO05D001548 1.9e-13 79.7 128 38.3
CSS0027972 Camellia sinensis var. sinensis HOM05D000510 ORTHO05D001548 1.9e-13 79.7 128 38.3
Lalb_Chr17g0346791 Lupinus albus HOM05D000510 ORTHO05D001548 1.9e-13 79.7 105 42.9
Rhsim13G0068600 Rhododendron simsii HOM05D000510 ORTHO05D001548 1.9e-13 79.7 120 36.7
Rhsim09G0177200 Rhododendron simsii HOM05D000510 ORTHO05D001548 2.5e-13 79.3 144 34.7
Gohir.D08G013100 Gossypium hirsutum HOM05D000510 ORTHO05D001548 3.3e-13 79.0 112 40.2
Lj6g0000739 Lotus japonicus HOM05D000510 ORTHO05D001548 3.3e-13 79.0 77 50.6
Manes.01G160900 Manihot esculenta HOM05D000510 ORTHO05D001548 3.3e-13 79.0 46 76.1
AUR62012253 Chenopodium quinoa HOM05D000510 ORTHO05D001548 4.3e-13 78.6 115 40.0
Gorai.004G007200 Gossypium raimondii HOM05D000510 ORTHO05D001548 4.3e-13 78.6 112 40.2
Hma1.2p1_0962F.1_g241840 Hydrangea macrophylla HOM05D000510 ORTHO05D001548 5.6e-13 78.2 91 45.1
Medtr3g070800 Medicago truncatula HOM05D000510 ORTHO05D001548 7.3e-13 77.8 88 42.0
Sabra10G0145300 Salix brachista HOM05D000510 ORTHO05D001548 7.3e-13 77.8 84 47.6
Rhsim13G0068900 Rhododendron simsii HOM05D000510 ORTHO05D001548 9.6e-13 77.4 120 35.8
Gohir.A06G163300 Gossypium hirsutum HOM05D000510 ORTHO05D001548 1.3e-12 77.0 103 41.7
Psat5g128240 Pisum sativum HOM05D000510 ORTHO05D001548 1.3e-12 77.0 98 38.8
Gohir.D13G016400 Gossypium hirsutum HOM05D000510 ORTHO05D001548 1.6e-12 76.6 98 41.8
Gorai.013G018100 Gossypium raimondii HOM05D000510 ORTHO05D001548 1.6e-12 76.6 98 41.8
Gohir.D06G168900 Gossypium hirsutum HOM05D000510 ORTHO05D001548 2.1e-12 76.3 103 41.7
Gorai.010G197700 Gossypium raimondii HOM05D000510 ORTHO05D001548 2.1e-12 76.3 103 41.7
FAN21G2360 Fragaria x ananassa HOM05D000510 ORTHO05D001548 2.8e-12 75.9 118 34.7
AUR62022886 Chenopodium quinoa HOM05D000510 ORTHO05D001548 3.6e-12 75.5 103 39.8
MD11G1073300 Malus domestica HOM05D000510 ORTHO05D001548 3.6e-12 75.5 101 43.6
Medtr3g464080 Medicago truncatula HOM05D000510 ORTHO05D001548 3.6e-12 75.5 121 33.1
TAR636G3361 Trochodendron aralioides HOM05D000510 ORTHO05D001548 3.6e-12 75.5 120 35.0
CiPaw.13G076800 Carya illinoinensis HOM05D000510 ORTHO05D001548 4.8e-12 75.1 59 55.9
Gohir.A08G002400 Gossypium hirsutum HOM05D000510 ORTHO05D001548 4.8e-12 75.1 88 45.5
EL10Ac2g04833 Beta vulgaris HOM05D000510 ORTHO05D001548 8.1e-12 74.3 123 34.1
Ca_14941_v3 Cicer arietinum L. HOM05D000510 ORTHO05D001548 8.1e-12 74.3 114 33.3
FAN25G0552 Fragaria x ananassa HOM05D000510 ORTHO05D001548 8.1e-12 74.3 86 45.3
FvH4_3g38710 Fragaria vesca HOM05D000510 ORTHO05D001548 1.1e-11 73.9 86 45.3
FAN11G3053 Fragaria x ananassa HOM05D000510 ORTHO05D001548 1.1e-11 73.9 86 45.3
Glyma.18G062500 Glycine max HOM05D000510 ORTHO05D001548 1.1e-11 73.9 125 32.8
Potri.008G068700 Populus trichocarpa HOM05D000510 ORTHO05D001548 1.4e-11 73.6 118 34.7
Sabra08G0050400 Salix brachista HOM05D000510 ORTHO05D001548 1.4e-11 73.6 118 34.7
TAR633G0849 Trochodendron aralioides HOM05D000510 ORTHO05D001548 1.4e-11 73.6 120 35.8
Lalb_Chr15g0082921 Lupinus albus HOM05D000510 ORTHO05D001548 1.8e-11 73.2 91 39.6
Phvul.006G068400 Phaseolus vulgaris HOM05D000510 ORTHO05D001548 1.8e-11 73.2 131 32.1
Potri.001G252400 Populus trichocarpa HOM05D000510 ORTHO05D001548 1.8e-11 73.2 46 71.7
Glyma.11G174800 Glycine max HOM05D000510 ORTHO05D001548 2.4e-11 72.8 120 32.5
Gohir.A13G015200 Gossypium hirsutum HOM05D000510 ORTHO05D001548 2.4e-11 72.8 98 40.8
FAN16G1596 Fragaria x ananassa HOM05D000510 ORTHO05D001548 3.1e-11 72.4 90 42.2
Lalb_Chr10g0105151 Lupinus albus HOM05D000510 ORTHO05D001548 3.1e-11 72.4 75 49.3
Rhsim03G0144000 Rhododendron simsii HOM05D000510 ORTHO05D001548 3.1e-11 72.4 132 34.1
Ciclev10030732m.g Citrus clementina HOM05D000510 ORTHO05D001548 5.3e-11 71.6 126 31.7
PSO339G6721 Papaver somniferum HOM05D000510 ORTHO05D001548 6.9e-11 71.2 92 40.2
MD03G1068800 Malus domestica HOM05D000510 ORTHO05D001548 9.0e-11 70.9 59 57.6
Medtr5g082630 Medicago truncatula HOM05D000510 ORTHO05D001548 9.0e-11 70.9 90 43.3
Psat2g032640 Pisum sativum HOM05D000510 ORTHO05D001548 9.0e-11 70.9 121 31.4
Potri.010G188600 Populus trichocarpa HOM05D000510 ORTHO05D001548 1.5e-10 70.1 118 33.9
arahy.Tifrunner.gnm1.ann1.1NSR5U Arachis hypogaea HOM05D000510 ORTHO05D001548 2.0e-10 69.7 141 29.8
Lj6g0003163 Lotus japonicus HOM05D000510 ORTHO05D001548 2.0e-10 69.7 150 31.3
Duzib128G0662 Durio zibethinus HOM05D000510 ORTHO05D001548 2.6e-10 69.3 98 40.8
PGSC0003DMG400027124 Solanum tuberosum HOM05D000510 ORTHO05D001548 2.6e-10 69.3 123 30.1
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 3.4e-10 68.9 131 33.6
CAN.G199.42 Capsicum annuum HOM05D000510 ORTHO05D001548 4.4e-10 68.6 84 40.5
Glyma.02G257300 Glycine max HOM05D000510 ORTHO05D001548 4.4e-10 68.6 131 32.8
MBI15_g13380_MAGBIO Magnolia biondii HOM05D000510 ORTHO05D001548 4.4e-10 68.6 73 46.6
arahy.Tifrunner.gnm1.ann1.105KNS Arachis hypogaea HOM05D000510 ORTHO05D001548 7.6e-10 67.8 125 30.4
Ca_05960_v3 Cicer arietinum L. HOM05D000510 ORTHO05D001548 7.6e-10 67.8 114 33.3
Gohir.A10G236500 Gossypium hirsutum HOM05D000510 ORTHO05D001548 7.6e-10 67.8 98 39.8
Gohir.D10G248300 Gossypium hirsutum HOM05D000510 ORTHO05D001548 7.6e-10 67.8 98 39.8
Gorai.011G288100 Gossypium raimondii HOM05D000510 ORTHO05D001548 7.6e-10 67.8 98 39.8
Solyc05g052590.1 Solanum lycopersicum HOM05D000510 ORTHO05D001548 7.6e-10 67.8 123 29.3
VMungo1383G1553 Vigna mungo HOM05D000510 ORTHO05D001548 7.6e-10 67.8 115 33.9
CiPaw.02G192500 Carya illinoinensis HOM05D000510 ORTHO05D001548 9.9e-10 67.4 121 33.1
Cc01_g14280 Coffea canephora HOM05D000510 ORTHO05D001548 9.9e-10 67.4 59 54.2
TPR.G21180 Trifolium pratense HOM05D000510 ORTHO05D001548 9.9e-10 67.4 61 50.8
TWI73G1035 Tripterygium wilfordii HOM05D000510 ORTHO05D001548 9.9e-10 67.4 118 29.7
AUR62020143 Chenopodium quinoa HOM05D000510 ORTHO05D001548 1.3e-09 67.0 137 32.8
Ca_15128_v3 Cicer arietinum L. HOM05D000510 ORTHO05D001548 1.3e-09 67.0 83 44.6
Duzib114G0278 Durio zibethinus HOM05D000510 ORTHO05D001548 1.3e-09 67.0 99 41.4
Dinv28647 Davidia involucrata HOM05D000510 ORTHO05D001548 1.7e-09 66.6 84 41.7
Phvul.008G223900 Phaseolus vulgaris HOM05D000510 ORTHO05D001548 1.7e-09 66.6 90 42.2
Sopen05g031120 Solanum pennellii HOM05D000510 ORTHO05D001548 1.7e-09 66.6 116 30.2
Sopen06g017520 Solanum pennellii HOM05D000510 ORTHO05D001548 1.7e-09 66.6 110 32.7
ClCG07G004190 Citrullus lanatus HOM05D000510 ORTHO05D001548 2.2e-09 66.2 83 44.6
Actinidia13938 Actinidia chinensis HOM05D000510 ORTHO05D001548 2.9e-09 65.9 134 29.1
Ah.10g036550 Amaranthus hybridus HOM05D000510 ORTHO05D001548 2.9e-09 65.9 112 34.8
VMungo0540G1846 Vigna mungo HOM05D000510 ORTHO05D001548 2.9e-09 65.9 125 29.6
VMungo0647G0707 Vigna mungo HOM05D000510 ORTHO05D001548 2.9e-09 65.9 116 32.8
Sc10g0002370 Simmondsia chinensis HOM05D000510 ORTHO05D001548 3.8e-09 65.5 119 31.1
PGSC0003DMG400028073 Solanum tuberosum HOM05D000510 ORTHO05D001548 3.8e-09 65.5 121 30.6
Thecc.10G015900 Theobroma cacao HOM05D000510 ORTHO05D001548 3.8e-09 65.5 98 38.8
RcHm_v2.0_Chr1g0370251 Rosa chinensis HOM05D000510 ORTHO05D001548 4.9e-09 65.1 121 33.1
CARHR166030 Cardamine hirsuta HOM05D000510 ORTHO05D001548 6.4e-09 64.7 120 30.0
Lj1C136T4 Lonicera japonica HOM05D000510 ORTHO05D001548 8.4e-09 64.3 55 54.5
Nn2g13134 Nelumbo nucifera HOM05D000510 ORTHO05D001548 8.4e-09 64.3 79 45.6
TPR.G38365 Trifolium pratense HOM05D000510 ORTHO05D001548 8.4e-09 64.3 82 40.2
AL5G37230 Arabidopsis lyrata HOM05D000510 ORTHO05D001548 1.1e-08 63.9 118 32.2
Glyma.14G059100 Glycine max HOM05D000510 ORTHO05D001548 1.1e-08 63.9 116 31.9
Sed0022189 Sechium edule HOM05D000510 ORTHO05D001548 1.1e-08 63.9 127 31.5
PSO339G4008 Papaver somniferum HOM05D000510 ORTHO05D001548 1.9e-08 63.2 119 32.8
CAN.G1158.3 Capsicum annuum HOM05D000510 ORTHO05D001548 2.4e-08 62.8 52 51.9
Carub.0005s2269 Capsella rubella HOM05D000510 ORTHO05D001548 3.2e-08 62.4 118 31.4
Prupe.2G250300 Prunus persica HOM05D000510 ORTHO05D001548 3.2e-08 62.4 112 33.0
AUR62001637 Chenopodium quinoa HOM05D000510 ORTHO05D001548 4.2e-08 62.0 93 35.5
CsaV3_5G010140 Cucumis sativus L. HOM05D000510 ORTHO05D001548 4.2e-08 62.0 124 35.5
PSO384G2585 Papaver somniferum HOM05D000510 ORTHO05D001548 4.2e-08 62.0 94 39.4
PGR142G1494 Punica granatum HOM05D000510 ORTHO05D001548 5.4e-08 61.6 126 31.7
A09p48900 Brassica napus HOM05D000510 ORTHO05D001548 7.1e-08 61.2 111 30.6
BraA09t40345Z Brassica rapa HOM05D000510 ORTHO05D001548 7.1e-08 61.2 111 30.6
PSO801G0713 Papaver somniferum HOM05D000510 ORTHO05D001548 7.1e-08 61.2 119 31.9
Thhalv10005797m.g Eutrema salsugineum HOM05D000510 ORTHO05D001548 9.3e-08 60.8 117 33.3
Sp5g06580 Schrenkiella parvula HOM05D000510 ORTHO05D001548 9.3e-08 60.8 116 30.2
Cpa.g.sc19.172 Carica papaya HOM05D000510 ORTHO05D001548 1.2e-07 60.5 123 33.3
MELO3C025195.2 Cucumis melo HOM05D000510 ORTHO05D001548 1.2e-07 60.5 123 32.5
MD01G1153100 Malus domestica HOM05D000510 ORTHO05D001548 1.2e-07 60.5 125 29.6
Ah.16g103560 Amaranthus hybridus HOM05D000510 ORTHO05D001548 1.6e-07 60.1 157 26.1
C08p31260 Brassica napus HOM05D000510 ORTHO05D001548 1.6e-07 60.1 111 30.6
BolC8t50747H Brassica oleracea HOM05D000510 ORTHO05D001548 1.6e-07 60.1 111 30.6
BcaC07g39912 Brassica carinata HOM05D000510 ORTHO05D001548 2.1e-07 59.7 108 32.4
FvH4_7g24490 Fragaria vesca HOM05D000510 ORTHO05D001548 2.7e-07 59.3 51 56.9
FAN01G1576 Fragaria x ananassa HOM05D000510 ORTHO05D001548 2.7e-07 59.3 51 56.9
FAN03G2243 Fragaria x ananassa HOM05D000510 ORTHO05D001548 2.7e-07 59.3 51 56.9
FAN06G3427 Fragaria x ananassa HOM05D000510 ORTHO05D001548 2.7e-07 59.3 51 56.9
FAN10G3043 Fragaria x ananassa HOM05D000510 ORTHO05D001548 2.7e-07 59.3 95 38.9
Nitab4.5_0000666g0070 Nicotiana tabacum HOM05D000510 ORTHO05D001548 2.7e-07 59.3 108 31.5
BcaB01g00048 Brassica carinata HOM05D000510 ORTHO05D001548 3.5e-07 58.9 116 29.3
Cc02_g06490 Coffea canephora HOM05D000510 ORTHO05D001548 3.5e-07 58.9 84 36.9
Zm00001eb265200 Zea mays HOM05D000510 ORTHO05D001548 3.5e-07 58.9 88 37.5
DCAR_024823 Daucus carota HOM05D000510 ORTHO05D001548 4.6e-07 58.5 79 39.2
TWI09G0635 Tripterygium wilfordii HOM05D000510 ORTHO05D001548 4.6e-07 58.5 52 50.0
Ah.08g221300 Amaranthus hybridus HOM05D000510 ORTHO05D001548 7.9e-07 57.8 127 28.3
EL10Ac7g16179 Beta vulgaris HOM05D000510 ORTHO05D001548 7.9e-07 57.8 158 29.1
Lsat_1_v5_gn_8_12020 Lactuca sativa HOM05D000510 ORTHO05D001548 7.9e-07 57.8 117 30.8
Peaxi162Scf00957g00331 Petunia axillaris HOM05D000510 ORTHO05D001548 7.9e-07 57.8 111 28.8
SalBow6G2658 Salvia bowleyana HOM05D000510 ORTHO05D001548 7.9e-07 57.8 58 43.1
HanXRQChr07g0202871 Helianthus annuus HOM05D000510 ORTHO05D001548 1.0e-06 57.4 123 28.5
Aa31LG10G10880 Aethionema arabicum HOM05D000510 ORTHO05D001548 1.3e-06 57.0 120 29.2
Eucgr.G03061 Eucalyptus grandis HOM05D000510 ORTHO05D001548 1.3e-06 57.0 58 46.6
SHI03427 Sapria himalayana HOM05D000510 ORTHO05D001548 1.7e-06 56.6 118 30.5
vmacro02955 Vaccinium macrocarpon HOM05D000510 ORTHO05D001548 1.7e-06 56.6 100 34.0
CANSAT54G2508 Cannabis sativa HOM05D000510 ORTHO05D001548 3.0e-06 55.8 98 35.7
Eucgr.J00204 Eucalyptus grandis HOM05D000510 ORTHO05D001548 3.0e-06 55.8 55 52.7
CSS0010972 Camellia sinensis var. sinensis HOM05D000510 ORTHO05D001548 3.9e-06 55.5 137 31.4
CiPaw.01G298800 Carya illinoinensis HOM05D000510 ORTHO05D001548 3.9e-06 55.5 115 29.6
QL08p063220 Quercus lobata HOM05D000510 ORTHO05D001548 5.1e-06 55.1 81 37.0
Dinv17996 Davidia involucrata HOM05D000510 ORTHO05D001548 6.6e-06 54.7 98 32.7
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 6.6e-06 54.7 82 34.1
MD00G1166500 Malus domestica HOM05D000510 ORTHO05D001548 8.7e-06 54.3 119 29.4
MD07G1222100 Malus domestica HOM05D000510 ORTHO05D001548 8.7e-06 54.3 119 29.4
VMungo1127G0595 Vigna mungo HOM05D000510 ORTHO05D001548 8.7e-06 54.3 86 34.9


User provided reference genes

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