Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 5.1e-31 137.1 69 100.0
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 5.6e-22 107.1 64 84.4
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 9.6e-22 106.3 64 82.8
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 1.6e-21 105.5 66 78.8
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 2.1e-21 105.1 64 82.8
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 2.1e-21 105.1 68 77.9
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 2.8e-21 104.8 68 77.9
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 2.8e-21 104.8 68 77.9
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 2.8e-21 104.8 68 77.9
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 4.7e-21 104.0 54 92.6
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 6.2e-21 103.6 69 79.7
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 1.1e-20 102.8 63 84.1
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 2.4e-20 101.7 61 82.0
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 2.4e-20 101.7 57 87.7
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 5.2e-20 100.5 68 75.0
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 6.9e-20 100.1 62 79.0
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 6.9e-20 100.1 64 78.1
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 6.9e-20 100.1 63 77.8
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 1.2e-19 99.4 63 77.8
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 1.2e-19 99.4 65 76.9
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 1.5e-19 99.0 52 92.3
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 2.0e-19 98.6 54 88.9
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 3.4e-19 97.8 65 75.4
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 7.6e-19 96.7 66 74.2
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 7.6e-19 96.7 67 76.1
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 7.6e-19 96.7 65 76.9
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 7.6e-19 96.7 65 73.8
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 9.9e-19 96.3 55 83.6
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 9.9e-19 96.3 55 83.6
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 1.3e-18 95.9 63 74.6
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 1.3e-18 95.9 54 85.2
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 1.7e-18 95.5 54 87.0
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 1.7e-18 95.5 55 83.6
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.7e-18 95.5 55 83.6
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.7e-18 95.5 55 83.6
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 1.7e-18 95.5 55 83.6
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 1.7e-18 95.5 56 78.6
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 1.7e-18 95.5 54 83.3
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 2.2e-18 95.1 65 75.4
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 2.9e-18 94.7 63 74.6
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 2.9e-18 94.7 55 81.8
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 3.8e-18 94.4 65 75.4
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 3.8e-18 94.4 55 83.6
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 4.9e-18 94.0 62 79.0
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 4.9e-18 94.0 58 79.3
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 4.9e-18 94.0 58 79.3
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 4.9e-18 94.0 62 74.2
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 6.4e-18 93.6 62 75.8
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 1.1e-17 92.8 63 74.6
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 1.1e-17 92.8 55 81.8
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 1.1e-17 92.8 55 83.6
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 1.1e-17 92.8 50 90.0
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 1.4e-17 92.4 53 83.0
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 1.4e-17 92.4 56 80.4
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 1.4e-17 92.4 62 74.2
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 1.4e-17 92.4 54 83.3
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 3.2e-17 91.3 53 83.0
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 3.2e-17 91.3 65 70.8
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 3.2e-17 91.3 55 80.0
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 4.2e-17 90.9 59 74.6
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 4.2e-17 90.9 59 74.6
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 4.2e-17 90.9 58 75.9
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 7.1e-17 90.1 54 77.8
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 7.1e-17 90.1 54 77.8
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 7.1e-17 90.1 54 77.8
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 7.1e-17 90.1 54 77.8
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 7.1e-17 90.1 54 77.8
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 7.1e-17 90.1 54 77.8
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 7.1e-17 90.1 54 77.8
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 7.1e-17 90.1 54 77.8
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 7.1e-17 90.1 53 81.1
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 7.1e-17 90.1 54 77.8
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 7.1e-17 90.1 53 84.9
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 7.1e-17 90.1 53 84.9
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 7.1e-17 90.1 53 84.9
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 7.1e-17 90.1 62 72.6
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 9.3e-17 89.7 62 72.6
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 9.3e-17 89.7 54 79.6
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 9.3e-17 89.7 54 81.5
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 1.2e-16 89.4 54 77.8
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 1.2e-16 89.4 54 77.8
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 1.2e-16 89.4 54 77.8
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 1.2e-16 89.4 54 77.8
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 1.2e-16 89.4 54 75.9
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 1.6e-16 89.0 65 70.8
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 1.6e-16 89.0 65 70.8
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 1.6e-16 89.0 62 71.0
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 2.1e-16 88.6 50 86.0
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 2.1e-16 88.6 55 80.0
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 3.5e-16 87.8 54 75.9
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 4.6e-16 87.4 54 75.9
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 4.6e-16 87.4 54 75.9
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 7.8e-16 86.7 54 75.9
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 7.8e-16 86.7 65 66.2
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 1.0e-15 86.3 54 75.9
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 1.3e-15 85.9 62 69.4
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 1.7e-15 85.5 50 84.0
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 1.7e-15 85.5 50 84.0
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 2.3e-15 85.1 64 71.9
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 6.6e-15 83.6 53 75.5
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 1.1e-14 82.8 53 77.4
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 4.3e-14 80.9 54 68.5
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 1.6e-13 79.0 51 78.4
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 8.1e-13 76.6 56 75.0
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 1.8e-12 75.5 45 84.4
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 2.6e-11 71.6 53 66.0
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 4.5e-11 70.9 43 76.7
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 5.8e-11 70.5 50 70.0
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 3.8e-10 67.8 56 60.7
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 1.4e-09 65.9 38 84.2
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 1.9e-09 65.5 39 82.1
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 1.9e-09 65.5 39 82.1
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 2.4e-09 65.1 44 72.7
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 2.7e-08 61.6 51 62.7
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 2.7e-08 61.6 51 62.7
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 4.6e-08 60.8 32 93.8
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 1.3e-07 59.3 66 53.0
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 8.7e-07 56.6 43 65.1
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 2.5e-06 55.1 29 93.1
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 5.6e-06 53.9 42 64.3
CARHR102160 Cardamine hirsuta HOM05D005913 ORTHO05D007138 7.4e-06 53.5 54 51.9
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 9.6e-06 53.1 35 71.4


User provided reference genes

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