Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 2.3e-123 445.7 243 100.0
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.5e-77 293.5 165 84.8
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 2.0e-74 283.1 164 82.3
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 1.0e-73 280.8 164 82.3
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 1.4e-72 276.9 164 79.3
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.9e-72 276.6 164 79.3
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.6e-71 273.5 171 78.4
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 2.7e-71 272.7 164 78.7
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 1.0e-70 270.8 160 79.4
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 1.8e-70 270.0 160 81.2
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 2.3e-70 269.6 156 82.7
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 6.7e-70 268.1 162 77.2
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 1.5e-69 266.9 164 73.8
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 1.9e-69 266.5 163 75.5
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 7.4e-69 264.6 160 76.2
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.6e-68 263.5 161 74.5
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 3.7e-68 262.3 161 75.8
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.1e-67 260.8 162 73.5
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 2.4e-67 259.6 163 74.8
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 2.4e-67 259.6 160 75.0
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 3.1e-67 259.2 163 74.8
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 3.1e-67 259.2 163 73.0
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 4.1e-67 258.8 159 74.8
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 4.1e-67 258.8 160 76.9
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 2.0e-66 256.5 162 74.7
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.6e-66 256.1 165 73.9
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 3.4e-66 255.8 160 75.6
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 3.4e-66 255.8 165 70.9
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 3.4e-66 255.8 165 70.9
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 5.9e-66 255.0 179 65.4
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.0e-65 254.2 158 75.3
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.0e-65 254.2 165 69.7
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 1.3e-65 253.8 163 71.8
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.3e-65 253.8 173 67.6
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 2.2e-65 253.1 164 70.1
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 2.2e-65 253.1 161 71.4
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 2.9e-65 252.7 165 69.1
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 3.8e-65 252.3 160 75.0
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 3.8e-65 252.3 159 73.6
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 3.8e-65 252.3 159 74.8
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 5.0e-65 251.9 159 73.0
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 1.1e-64 250.8 159 73.0
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 1.1e-64 250.8 159 73.0
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 1.1e-64 250.8 159 73.0
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 1.1e-64 250.8 159 72.3
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.1e-64 250.8 159 73.0
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.4e-64 250.4 158 73.4
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.4e-64 250.4 163 71.2
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 1.4e-64 250.4 159 73.6
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 1.4e-64 250.4 159 73.6
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 1.9e-64 250.0 159 71.7
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 1.9e-64 250.0 160 72.5
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 2.5e-64 249.6 173 66.5
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 2.5e-64 249.6 163 71.2
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 2.5e-64 249.6 157 73.9
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 3.2e-64 249.2 163 70.6
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 3.2e-64 249.2 163 71.2
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 4.2e-64 248.8 159 72.3
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 4.2e-64 248.8 179 66.5
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 5.5e-64 248.4 159 71.7
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 7.2e-64 248.1 178 66.9
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 7.2e-64 248.1 159 71.7
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 7.2e-64 248.1 159 71.7
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 7.2e-64 248.1 164 68.9
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 1.2e-63 247.3 159 72.3
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 1.2e-63 247.3 157 72.0
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.6e-63 246.9 158 72.8
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 6.1e-63 245.0 169 66.9
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 6.1e-63 245.0 157 73.9
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 7.9e-63 244.6 176 65.3
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.0e-62 244.2 178 66.3
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.8e-62 243.4 163 71.2
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 2.3e-62 243.0 160 71.2
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 2.3e-62 243.0 159 69.2
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 2.3e-62 243.0 151 73.5
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 5.1e-62 241.9 154 74.0
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 5.1e-62 241.9 154 72.7
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 6.7e-62 241.5 159 69.8
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 6.7e-62 241.5 171 65.5
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 8.8e-62 241.1 158 70.9
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 1.1e-61 240.7 159 71.1
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 1.5e-61 240.4 164 68.9
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 2.0e-61 240.0 172 64.0
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 2.5e-61 239.6 158 68.4
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 3.3e-61 239.2 164 67.1
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 4.3e-61 238.8 160 69.4
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 9.7e-61 237.7 164 66.5
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 1.3e-60 237.3 161 68.3
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.3e-60 237.3 171 64.3
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 2.2e-60 236.5 160 68.8
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 2.8e-60 236.1 160 68.1
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 3.7e-60 235.7 160 70.6
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 3.7e-60 235.7 155 67.1
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 2.4e-59 233.0 157 72.0
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 5.3e-59 231.9 206 56.8
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 9.1e-59 231.1 158 67.7
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 9.1e-59 231.1 169 65.1
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 3.4e-58 229.2 155 69.0
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 3.4e-58 229.2 176 64.2
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 7.7e-58 228.0 159 66.7
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 1.0e-57 227.6 150 69.3
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 1.3e-57 227.3 161 64.6
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.3e-57 227.3 162 66.0
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 5.0e-57 225.3 148 70.3
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 1.4e-56 223.8 150 68.0
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.9e-56 223.4 158 66.5
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 1.9e-56 223.4 159 67.9
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.2e-56 222.6 150 68.0
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 4.2e-56 222.2 148 68.9
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 7.2e-56 221.5 137 74.5
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 7.2e-56 221.5 160 64.4
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.2e-55 220.7 150 67.3
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.2e-55 220.7 162 64.2
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 1.2e-55 220.7 160 66.2
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.1e-55 219.9 165 61.8
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 3.6e-55 219.2 150 68.7
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 4.7e-55 218.8 153 68.6
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 6.1e-55 218.4 147 68.7
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.0e-54 217.6 158 65.2
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 3.0e-54 216.1 144 70.1
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 3.9e-54 215.7 165 61.2
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.9e-54 215.7 165 61.2
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.9e-54 215.7 165 61.2
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 8.8e-54 214.5 151 66.9
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 3.3e-53 212.6 164 62.2
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 4.4e-53 212.2 155 64.5
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 5.7e-53 211.8 184 59.8
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 1.3e-52 210.7 159 60.4
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.2e-52 209.9 158 62.7
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 6.3e-52 208.4 180 61.1
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 1.4e-51 207.2 153 64.1
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 2.4e-51 206.5 207 51.2
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 3.1e-51 206.1 137 70.8
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 7.0e-51 204.9 151 65.6
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 4.5e-50 202.2 127 74.0
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 5.9e-50 201.8 141 66.7
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.0e-49 201.1 140 67.1
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 2.2e-49 199.9 130 74.6
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 2.9e-49 199.5 137 67.9
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.0e-47 191.4 132 65.9
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 5.7e-45 185.3 127 70.1
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.7e-44 182.6 125 66.4
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 4.8e-44 182.2 158 58.9
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 1.1e-40 171.0 146 54.8
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 1.9e-40 170.2 127 63.0
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 2.1e-39 166.8 142 57.0
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.8e-35 153.7 96 71.9
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 1.1e-32 144.4 94 71.3
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 1.4e-30 137.5 129 58.1
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 4.1e-27 125.9 89 69.7
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 4.7e-23 112.5 112 51.8
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.1e-23 112.1 176 42.0
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 2.2e-20 103.6 156 33.3
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 1.4e-19 100.9 79 62.0
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.3e-17 94.4 161 34.8
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 2.9e-17 93.2 123 35.8
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 6.1e-15 85.5 80 56.2
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 1.4e-14 84.3 102 38.2
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 2.6e-13 80.1 117 35.0
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 8.3e-12 75.1 69 55.1
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 7.0e-11 72.0 124 30.6
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 5.6e-08 62.4 56 53.6
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 4.7e-07 59.3 35 71.4


User provided reference genes

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