Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.4150 Acer truncatum HOM05D006395 ORTHO05D007894 3.0e-146 522.3 371 100.0
COL.COLO4_11118 Corchorus olitorius HOM05D006395 ORTHO05D007894 2.3e-101 373.2 370 77.8
Potri.001G280500 Populus trichocarpa HOM05D006395 ORTHO05D007894 4.3e-100 369.0 370 78.4
Thecc.09G354500 Theobroma cacao HOM05D006395 ORTHO05D007894 7.3e-100 368.2 364 78.6
Haze_24385 Corylus avellana HOM05D006395 ORTHO05D007894 5.2e-98 362.1 368 77.7
Gohir.D03G141400 Gossypium hirsutum HOM05D006395 ORTHO05D007894 2.0e-97 360.1 366 77.9
Manes.18G144200 Manihot esculenta HOM05D006395 ORTHO05D007894 2.0e-97 360.1 370 74.9
Cfa011744 Carpinus fangiana HOM05D006395 ORTHO05D007894 9.8e-97 357.8 368 76.9
Duzib168G0704 Durio zibethinus HOM05D006395 ORTHO05D007894 3.7e-96 355.9 381 69.8
QL01p039673 Quercus lobata HOM05D006395 ORTHO05D007894 3.7e-96 355.9 366 77.0
Eucgr.B02227 Eucalyptus grandis HOM05D006395 ORTHO05D007894 2.4e-95 353.2 364 75.3
Prupe.6G052000 Prunus persica HOM05D006395 ORTHO05D007894 1.2e-94 350.9 364 75.3
GSVIVG01024681001 Vitis vinifera HOM05D006395 ORTHO05D007894 2.0e-94 350.1 366 75.4
MD03G1062200 Malus domestica HOM05D006395 ORTHO05D007894 1.3e-93 347.4 371 73.6
PGR102G2618 Punica granatum HOM05D006395 ORTHO05D007894 1.5e-92 344.0 363 73.3
Cpa.g.sc2.390 Carica papaya HOM05D006395 ORTHO05D007894 1.0e-90 337.8 365 75.1
RcHm_v2.0_Chr5g0070801 Rosa chinensis HOM05D006395 ORTHO05D007894 9.8e-89 331.3 368 73.6
Lj6g0016849 Lotus japonicus HOM05D006395 ORTHO05D007894 4.9e-88 328.9 370 73.0
Sed0008967 Sechium edule HOM05D006395 ORTHO05D007894 6.4e-88 328.6 364 69.0
FvH4_3g39360 Fragaria vesca HOM05D006395 ORTHO05D007894 3.2e-87 326.2 365 66.6
CiPaw.13G072800 Carya illinoinensis HOM05D006395 ORTHO05D007894 7.0e-87 325.1 369 74.0
FAN25G1635 Fragaria x ananassa HOM05D006395 ORTHO05D007894 7.0e-87 325.1 365 66.6
FAN11G3343 Fragaria x ananassa HOM05D006395 ORTHO05D007894 6.0e-86 322.0 365 66.0
FAN21G1642 Fragaria x ananassa HOM05D006395 ORTHO05D007894 5.0e-85 318.9 379 64.6
Sabra16G0174100 Salix brachista HOM05D006395 ORTHO05D007894 5.0e-85 318.9 370 73.8
Nn2g10958 Nelumbo nucifera HOM05D006395 ORTHO05D007894 8.6e-85 318.2 366 72.1
Sp4g12670 Schrenkiella parvula HOM05D006395 ORTHO05D007894 2.5e-84 316.6 364 68.7
Glyma.18G059000 Glycine max HOM05D006395 ORTHO05D007894 3.3e-84 316.2 370 66.5
THA.LOC104800755 Tarenaya hassleriana HOM05D006395 ORTHO05D007894 3.3e-84 316.2 364 70.9
Carub.0004s1124 Capsella rubella HOM05D006395 ORTHO05D007894 2.1e-83 313.5 362 69.3
Cc01_g14640 Coffea canephora HOM05D006395 ORTHO05D007894 2.1e-83 313.5 365 68.5
Ciclev10028704m.g Citrus clementina HOM05D006395 ORTHO05D007894 3.6e-83 312.8 365 72.6
CsaV3_6G015980 Cucumis sativus L. HOM05D006395 ORTHO05D007894 3.6e-83 312.8 364 68.4
Psat5g157120 Pisum sativum HOM05D006395 ORTHO05D007894 6.2e-83 312.0 368 69.3
CARHR123410 Cardamine hirsuta HOM05D006395 ORTHO05D007894 1.4e-82 310.8 366 69.7
Lalb_Chr18g0051251 Lupinus albus HOM05D006395 ORTHO05D007894 1.4e-82 310.8 368 67.9
AT2G30105 Arabidopsis thaliana HOM05D006395 ORTHO05D007894 1.8e-82 310.5 374 69.8
Thhalv10016813m.g Eutrema salsugineum HOM05D006395 ORTHO05D007894 4.0e-82 309.3 364 70.6
AL4G24880 Arabidopsis lyrata HOM05D006395 ORTHO05D007894 1.5e-81 307.4 368 70.9
BraA04t17818Z Brassica rapa HOM05D006395 ORTHO05D007894 2.0e-81 307.0 364 70.6
MELO3C026838.2 Cucumis melo HOM05D006395 ORTHO05D007894 2.6e-81 306.6 370 67.6
A04p22790 Brassica napus HOM05D006395 ORTHO05D007894 4.4e-81 305.8 364 70.6
Rhsim13G0066200 Rhododendron simsii HOM05D006395 ORTHO05D007894 4.4e-81 305.8 368 69.8
vmacro02938 Vaccinium macrocarpon HOM05D006395 ORTHO05D007894 4.4e-81 305.8 374 63.9
Actinidia27062 Actinidia chinensis HOM05D006395 ORTHO05D007894 5.8e-81 305.4 360 71.9
BcaC02g08052 Brassica carinata HOM05D006395 ORTHO05D007894 1.7e-80 303.9 364 70.1
C04p58990 Brassica napus HOM05D006395 ORTHO05D007894 1.7e-80 303.9 364 70.1
ClCG02G019360 Citrullus lanatus HOM05D006395 ORTHO05D007894 1.7e-80 303.9 361 66.8
Peaxi162Scf00053g02113 Petunia axillaris HOM05D006395 ORTHO05D007894 2.2e-80 303.5 366 64.8
PGSC0003DMG400020546 Solanum tuberosum HOM05D006395 ORTHO05D007894 2.2e-80 303.5 370 67.8
BcaB06g28340 Brassica carinata HOM05D006395 ORTHO05D007894 2.9e-80 303.1 365 69.6
Medtr3g465570 Medicago truncatula HOM05D006395 ORTHO05D007894 2.4e-79 300.1 362 67.4
BcaC02g08055 Brassica carinata HOM05D006395 ORTHO05D007894 3.2e-79 299.7 364 62.6
Solyc06g007250.4 Solanum lycopersicum HOM05D006395 ORTHO05D007894 1.2e-78 297.7 366 69.1
Lj2C1089G4 Lonicera japonica HOM05D006395 ORTHO05D007894 1.6e-78 297.4 365 67.4
PSO170G0213 Papaver somniferum HOM05D006395 ORTHO05D007894 1.6e-78 297.4 375 63.7
PSO017G1403 Papaver somniferum HOM05D006395 ORTHO05D007894 7.8e-78 295.0 371 66.3
Hma1.2p1_0841F.1_g226810 Hydrangea macrophylla HOM05D006395 ORTHO05D007894 1.0e-77 294.7 362 68.2
Sopen06g002210 Solanum pennellii HOM05D006395 ORTHO05D007894 1.0e-77 294.7 366 68.9
VMungo0540G1476 Vigna mungo HOM05D006395 ORTHO05D007894 1.3e-77 294.3 368 70.1
MSTRG.21234 Avicennia marina HOM05D006395 ORTHO05D007894 1.7e-77 293.9 366 68.3
Gorai.003G148100 Gossypium raimondii HOM05D006395 ORTHO05D007894 1.7e-77 293.9 329 76.6
TPR.G32918 Trifolium pratense HOM05D006395 ORTHO05D007894 3.0e-77 293.1 357 72.3
Aa31LG5G6570 Aethionema arabicum HOM05D006395 ORTHO05D007894 5.1e-77 292.4 374 65.8
CAN.G241.20 Capsicum annuum HOM05D006395 ORTHO05D007894 8.6e-77 291.6 366 67.2
CDE12G0063 Ceratophyllum demersum HOM05D006395 ORTHO05D007894 2.1e-75 287.0 367 65.9
Gohir.A03G027300 Gossypium hirsutum HOM05D006395 ORTHO05D007894 6.2e-75 285.4 311 77.8
DCAR_018217 Daucus carota HOM05D006395 ORTHO05D007894 2.3e-74 283.5 366 69.7
TWI31G1172 Tripterygium wilfordii HOM05D006395 ORTHO05D007894 7.6e-73 278.5 331 73.1
Zm00001eb046860 Zea mays HOM05D006395 ORTHO05D007894 2.2e-72 276.9 362 66.3
Nitab4.5_0001941g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 6.4e-72 275.4 370 66.8
Dinv28676 Davidia involucrata HOM05D006395 ORTHO05D007894 1.9e-71 273.9 215 66.0
arahy.Tifrunner.gnm1.ann1.P58CS4 Arachis hypogaea HOM05D006395 ORTHO05D007894 1.2e-70 271.2 391 60.1
Hund05040 Selenicereus undatus HOM05D006395 ORTHO05D007894 1.2e-70 271.2 366 64.5
Aqoxy1G01323 Aquilegia oxysepala HOM05D006395 ORTHO05D007894 1.6e-70 270.8 367 61.0
arahy.Tifrunner.gnm1.ann1.775QX7 Arachis hypogaea HOM05D006395 ORTHO05D007894 3.0e-69 266.5 368 64.4
HPP92_025106 Vanilla planifolia HOM05D006395 ORTHO05D007894 8.6e-69 265.0 361 61.5
Migut.D00855 Erythranthe guttata HOM05D006395 ORTHO05D007894 1.9e-68 263.8 369 55.3
SGA_v2.0_scaffold20G09294 Striga asiatica HOM05D006395 ORTHO05D007894 3.3e-68 263.1 370 61.9
MBI15_g36485_MAGBIO Magnolia biondii HOM05D006395 ORTHO05D007894 1.6e-67 260.8 385 62.3
Ca_14986_v3 Cicer arietinum L. HOM05D006395 ORTHO05D007894 1.2e-65 254.6 318 72.6
Sc06g0008170 Simmondsia chinensis HOM05D006395 ORTHO05D007894 4.4e-65 252.7 363 60.1
EL10Ac7g15889 Beta vulgaris HOM05D006395 ORTHO05D007894 4.9e-64 249.2 368 58.4
Actinidia23216 Actinidia chinensis HOM05D006395 ORTHO05D007894 1.0e-61 241.5 223 58.7
BolC4t27411H Brassica oleracea HOM05D006395 ORTHO05D007894 2.3e-61 240.4 203 60.6
Phvul.006G072100 Phaseolus vulgaris HOM05D006395 ORTHO05D007894 3.9e-61 239.6 220 60.0
Nitab4.5_0000967g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 1.1e-60 238.0 370 57.0
CSS0046123 Camellia sinensis var. sinensis HOM05D006395 ORTHO05D007894 1.5e-60 237.7 229 56.8
FAN16G1183 Fragaria x ananassa HOM05D006395 ORTHO05D007894 5.3e-58 229.2 233 56.2
AUR62036248 Chenopodium quinoa HOM05D006395 ORTHO05D007894 2.6e-57 226.9 370 51.6
ECA236G5129 Erigeron canadensis HOM05D006395 ORTHO05D007894 1.9e-55 220.7 369 61.8
HanXRQChr05g0130471 Helianthus annuus HOM05D006395 ORTHO05D007894 3.5e-54 216.5 365 60.5
AUR62009698 Chenopodium quinoa HOM05D006395 ORTHO05D007894 1.8e-53 214.2 370 58.1
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 2.8e-51 206.8 366 51.4
TAR357G0003 Trochodendron aralioides HOM05D006395 ORTHO05D007894 4.8e-51 206.1 284 64.8
Lsat_1_v5_gn_8_111040 Lactuca sativa HOM05D006395 ORTHO05D007894 1.4e-50 204.5 367 59.7
Lj9A530T24 Lonicera japonica HOM05D006395 ORTHO05D007894 1.4e-47 194.5 192 57.3
ATR0174G031 Amborella trichopoda HOM05D006395 ORTHO05D007894 1.9e-47 194.1 192 51.6
Hma1.2p1_0841F.1_g226820 Hydrangea macrophylla HOM05D006395 ORTHO05D007894 1.0e-45 188.3 255 72.5
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 1.8e-45 187.6 367 51.5
Cc03_g12880 Coffea canephora HOM05D006395 ORTHO05D007894 6.2e-43 179.1 194 50.5
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 4.9e-40 169.5 361 46.8
Duzib150G1550 Durio zibethinus HOM05D006395 ORTHO05D007894 1.6e-35 154.5 116 68.1
unitig_0.g1179 Utricularia gibba HOM05D006395 ORTHO05D007894 2.8e-35 153.7 362 53.3
SEGI_13349 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 3.1e-34 150.2 176 46.0
Glyma.11G166200 Glycine max HOM05D006395 ORTHO05D007894 4.1e-34 149.8 137 59.9
Pp3c8_15530 Physcomitrium patens HOM05D006395 ORTHO05D007894 4.5e-33 146.4 222 37.4
CAN.G241.12 Capsicum annuum HOM05D006395 ORTHO05D007894 2.2e-32 144.1 264 64.0
Os10g0456200 Oryza sativa ssp. japonica HOM05D006395 ORTHO05D007894 7.4e-28 129.0 133 51.9
RcHm_v2.0_Chr5g0070821 Rosa chinensis HOM05D006395 ORTHO05D007894 1.6e-22 111.3 212 61.3
Nitab4.5_0000967g0090 Nicotiana tabacum HOM05D000734 ORTHO05D002223 1.5e-20 104.8 83 62.7
PSO782G5619 Papaver somniferum HOM05D006395 ORTHO05D007894 6.3e-19 99.4 62 75.8
Cc03_g12890 Coffea canephora HOM05D006395 ORTHO05D007894 1.1e-18 98.6 63 73.0
MD11G1065800 Malus domestica HOM05D006395 ORTHO05D007894 5.9e-17 92.8 114 49.1
SEGI_40979 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 6.5e-16 89.4 192 60.4
ATR0174G042 Amborella trichopoda HOM05D006395 ORTHO05D007894 8.5e-16 89.0 62 66.1
Migut.D00856 Erythranthe guttata HOM05D006395 ORTHO05D007894 7.2e-15 85.9 80 52.5
PSO339G4463 Papaver somniferum HOM05D006395 ORTHO05D007894 7.2e-15 85.9 55 70.9
SEGI_33382 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 5.2e-13 79.7 73 53.4
CBR_g32352 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-12 78.6 134 29.9
Cre16.g684800 Chlamydomonas reinhardtii HOM05D006395 ORTHO05D007894 2.0e-12 77.8 273 24.5
PSO675G0236 Papaver somniferum HOM05D006395 ORTHO05D007894 1.8e-10 71.2 94 45.7
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 2.4e-10 70.9 250 23.6
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 9.1e-10 68.9 62 51.6
Nitab4.5_0008731g0020 Nicotiana tabacum HOM05D000734 ORTHO05D002223 3.5e-09 67.0 52 63.5
PSO384G2798 Papaver somniferum HOM05D006238 ORTHO05D007458 3.8e-08 63.5 61 44.3
PSO339G0502 Papaver somniferum HOM05D006238 ORTHO05D007458 8.5e-08 62.4 61 44.3
FAN06G1459 Fragaria x ananassa HOM05D006395 ORTHO05D007894 1.1e-07 62.0 37 73.0
PRCOL_00004668 Prasinoderma coloniale HOM05D006395 ORTHO05D007894 1.9e-07 61.2 250 27.6
SMO364G0258 Selaginella moellendorffii HOM05D006238 ORTHO05D007458 2.5e-07 60.8 62 50.0
Sopen12g019730 Solanum pennellii HOM05D006238 ORTHO05D007458 3.2e-07 60.5 71 40.8
AUR62008501 Chenopodium quinoa HOM05D006238 ORTHO05D007458 4.2e-07 60.1 79 41.8
ECA247G0665 Erigeron canadensis HOM05D000006 ORTHO05D007458 4.2e-07 60.1 72 38.9
HanXRQChr02g0042551 Helianthus annuus HOM05D006238 ORTHO05D007458 4.2e-07 60.1 61 44.3
Oeu062485.1 Olea europaea HOM05D006238 ORTHO05D007458 4.2e-07 60.1 76 42.1
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 4.2e-07 60.1 61 39.3
Pp3c19_5770 Physcomitrium patens HOM05D006238 ORTHO05D007458 4.2e-07 60.1 60 48.3
Hund02602 Selenicereus undatus HOM05D006238 ORTHO05D007458 5.5e-07 59.7 71 43.7
Solyc12g040320.2 Solanum lycopersicum HOM05D006238 ORTHO05D007458 5.5e-07 59.7 68 41.2
Sopen03g034410 Solanum pennellii HOM05D006238 ORTHO05D007458 5.5e-07 59.7 63 42.9
Ciclev10021749m.g Citrus clementina HOM05D006238 ORTHO05D007458 7.2e-07 59.3 62 46.8
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 9.4e-07 58.9 61 42.6
Carub.0006s0680 Capsella rubella HOM05D006238 ORTHO05D007458 9.4e-07 58.9 64 42.2
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 9.4e-07 58.9 71 39.4
Solyc03g115410.3 Solanum lycopersicum HOM05D006238 ORTHO05D007458 9.4e-07 58.9 63 42.9
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 1.2e-06 58.5 259 53.7
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 1.2e-06 58.5 71 38.0
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 1.2e-06 58.5 257 52.9
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 1.2e-06 58.5 257 53.3
FAN07G0114 Fragaria x ananassa HOM05D005731 ORTHO05D012104 1.6e-06 58.2 32 78.1
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.6e-06 58.2 71 38.0
HPP92_013436 Vanilla planifolia HOM05D001674 ORTHO05D008374 1.6e-06 58.2 61 47.5
HPP92_027112 Vanilla planifolia HOM05D006238 ORTHO05D007458 1.6e-06 58.2 61 47.5
MSTRG.22972 Avicennia marina HOM05D006238 ORTHO05D007458 2.1e-06 57.8 76 42.1
CAN.G479.27 Capsicum annuum HOM05D006238 ORTHO05D007458 2.1e-06 57.8 63 41.3
CARHR205290 Cardamine hirsuta HOM05D006238 ORTHO05D007458 2.1e-06 57.8 64 40.6
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 2.1e-06 57.8 257 52.9
TWI81G0503 Tripterygium wilfordii HOM05D006238 ORTHO05D007458 2.1e-06 57.8 71 38.0
Atru.chr9.382 Acer truncatum HOM05D006238 ORTHO05D007458 2.7e-06 57.4 61 45.9
AL6G18240 Arabidopsis lyrata HOM05D006238 ORTHO05D007458 2.7e-06 57.4 64 40.6
AT5G07910 Arabidopsis thaliana HOM05D006238 ORTHO05D007458 2.7e-06 57.4 64 40.6
Lsat_1_v5_gn_4_110280 Lactuca sativa HOM05D006238 ORTHO05D007458 2.7e-06 57.4 61 45.9
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 2.7e-06 57.4 76 38.2
Sc10g0009770 Simmondsia chinensis HOM05D006238 ORTHO05D007458 2.7e-06 57.4 74 41.9
BcaB01g05687 Brassica carinata HOM05D006238 ORTHO05D007458 3.6e-06 57.0 61 45.9
CANSAT80G2720 Cannabis sativa HOM05D006238 ORTHO05D007458 3.6e-06 57.0 62 46.8
COL.COLO4_22216 Corchorus olitorius HOM05D006238 ORTHO05D007458 3.6e-06 57.0 70 38.6
EL10Ac5g11104 Beta vulgaris HOM05D006238 ORTHO05D007458 4.7e-06 56.6 76 39.5
Cpa.g.sc94.13 Carica papaya HOM05D006238 ORTHO05D007458 4.7e-06 56.6 61 41.0
Migut.L00004 Erythranthe guttata HOM05D006238 ORTHO05D007458 4.7e-06 56.6 76 39.5
THA.LOC104801299 Tarenaya hassleriana HOM05D006238 ORTHO05D007458 4.7e-06 56.6 64 40.6
BcaB01g05688 Brassica carinata HOM05D006238 ORTHO05D007458 6.1e-06 56.2 61 45.9
Prupe.5G201600 Prunus persica HOM05D006238 ORTHO05D007458 6.1e-06 56.2 69 39.1
GSVIVG01007912001 Vitis vinifera HOM05D006238 ORTHO05D007458 6.1e-06 56.2 61 42.6
Thecc.03G097700 Theobroma cacao HOM05D006238 ORTHO05D007458 8.0e-06 55.8 71 36.6


User provided reference genes

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