Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 1.6e-263 912.1 454 100.0
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 9.9e-192 673.7 418 80.1
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 6.4e-191 671.0 418 79.9
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 1.4e-190 669.8 420 80.2
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 1.0e-188 663.7 430 77.9
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 3.0e-188 662.1 431 77.0
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 3.0e-188 662.1 428 77.8
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 7.3e-187 657.5 432 76.4
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 2.8e-186 655.6 420 79.3
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 8.1e-186 654.1 439 76.8
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 1.1e-185 653.7 418 79.2
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 1.1e-185 653.7 418 78.0
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 7.6e-184 647.5 435 76.8
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 1.6e-181 639.8 431 76.3
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 2.1e-181 639.4 418 75.8
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 4.6e-181 638.3 430 74.4
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 7.8e-181 637.5 418 75.8
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 1.3e-180 636.7 418 75.6
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 6.6e-180 634.4 418 75.6
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 2.5e-179 632.5 418 76.6
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 3.3e-179 632.1 418 76.3
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 6.9e-177 624.4 435 74.3
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 1.4e-174 616.7 418 75.4
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 2.4e-174 615.9 419 74.7
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 3.2e-174 615.5 421 72.7
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 4.2e-174 615.1 417 74.1
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 9.3e-174 614.0 419 72.1
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 4.6e-173 611.7 421 72.7
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 1.0e-172 610.5 421 72.4
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 1.5e-171 606.7 421 71.3
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 1.9e-171 606.3 418 74.6
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 9.6e-171 604.0 432 70.1
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 1.6e-170 603.2 453 68.2
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 2.4e-169 599.4 418 71.8
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 4.5e-168 595.1 418 70.1
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 7.9e-165 584.3 432 67.6
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 1.8e-164 583.2 433 67.9
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 1.1e-163 580.5 418 69.4
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 4.3e-163 578.6 418 69.6
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 5.6e-163 578.2 432 66.9
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 1.6e-162 576.6 421 67.7
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 1.6e-162 576.6 439 67.4
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 1.6e-162 576.6 457 64.3
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 2.1e-162 576.2 439 66.3
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 2.8e-162 575.9 421 67.9
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 2.8e-162 575.9 439 66.7
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 5.3e-161 571.6 432 66.2
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 1.4e-158 563.5 432 66.4
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 1.4e-158 563.5 437 65.7
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 1.4e-158 563.5 421 67.5
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 3.2e-158 562.4 432 66.4
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 7.9e-157 557.8 407 68.1
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 3.9e-156 555.4 419 67.1
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 5.1e-156 555.1 421 67.5
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 7.4e-155 551.2 421 65.1
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 2.2e-154 549.7 419 65.2
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 6.3e-154 548.1 421 66.0
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 3.1e-153 545.8 423 65.5
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 3.1e-153 545.8 419 65.4
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 1.2e-152 543.9 420 65.2
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 1.7e-151 540.0 419 64.7
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 3.8e-151 538.9 419 64.7
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 8.5e-151 537.7 419 64.4
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 8.5e-151 537.7 419 64.0
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 1.1e-150 537.3 421 65.3
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 1.4e-150 537.0 419 64.4
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 9.3e-150 534.3 421 64.4
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 1.2e-149 533.9 419 64.2
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 1.6e-149 533.5 419 63.7
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 1.6e-149 533.5 419 63.7
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 2.1e-149 533.1 420 63.8
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 6.1e-149 531.6 420 63.3
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 1.8e-148 530.0 435 61.4
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 2.8e-146 522.7 420 62.6
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 2.8e-146 522.7 421 62.0
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 2.4e-145 519.6 422 63.5
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 1.5e-144 516.9 421 60.1
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 2.2e-143 513.1 438 62.1
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 3.8e-143 512.3 421 61.8
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 1.6e-141 506.9 428 60.3
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 4.7e-141 505.4 429 60.1
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 3.3e-139 499.2 419 61.8
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 1.1e-137 494.2 316 78.8
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 2.2e-135 486.5 382 63.4
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 1.1e-134 484.2 417 60.4
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 1.9e-134 483.4 435 57.9
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 4.5e-128 462.2 382 61.0
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 1.0e-127 461.1 424 54.7
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 1.3e-127 460.7 334 70.7
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 8.0e-125 451.4 316 74.4
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 8.0e-125 451.4 420 55.7
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 6.7e-124 448.4 330 66.1
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 9.7e-123 444.5 424 53.1
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 6.3e-122 441.8 421 55.6
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 4.4e-115 419.1 444 51.6
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 3.3e-110 402.9 481 49.5
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 1.4e-105 387.5 443 49.7
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 4.1e-105 386.0 451 48.6
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 2.3e-100 370.2 458 45.0
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 2.3e-95 353.6 232 75.4
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 1.1e-89 334.7 412 46.6
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 7.8e-88 328.6 293 59.4
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 1.1e-68 265.0 427 37.9
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 6.6e-63 245.7 449 35.9
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 1.1e-62 245.0 148 79.1
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 1.9e-57 227.6 425 34.4
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 6.0e-56 222.6 421 34.9
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 6.7e-55 219.2 132 80.3
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 1.5e-51 208.0 203 53.2
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 7.1e-49 199.1 187 53.5
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.9e-46 191.0 187 51.9
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 2.7e-40 170.6 392 30.4
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.2e-34 151.0 95 74.7
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 3.4e-27 127.1 159 44.7
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 7.4e-14 82.8 336 24.7
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 5.5e-09 66.6 82 47.6
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.1e-08 64.7 66 53.0
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 2.1e-08 64.7 261 28.0
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 2.1e-08 64.7 42 66.7
Sabra19G0131700 Salix brachista HOM05D000080 ORTHO05D004954 4.0e-07 60.5 96 40.6


User provided reference genes

Program Settings