Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.4091 Acer truncatum HOM05D000184 ORTHO05D000032 6.8e-78 293.9 146 100.0
Ciclev10030185m.g Citrus clementina HOM05D000184 ORTHO05D000032 7.1e-43 177.6 152 61.8
Haze_16162 Corylus avellana HOM05D000184 ORTHO05D000032 4.3e-40 168.3 153 58.2
Cfa003443 Carpinus fangiana HOM05D000184 ORTHO05D000032 4.1e-38 161.8 153 56.9
QL05p089057 Quercus lobata HOM05D000184 ORTHO05D000032 2.2e-36 156.0 154 55.2
CiPaw.02G129600 Carya illinoinensis HOM05D000184 ORTHO05D000032 3.8e-36 155.2 148 56.8
Thecc.06G050900 Theobroma cacao HOM05D000184 ORTHO05D000032 4.2e-35 151.8 143 58.0
Potri.007G003200 Populus trichocarpa HOM05D000184 ORTHO05D000032 5.5e-35 151.4 153 53.6
COL.COLO4_26819 Corchorus olitorius HOM05D000184 ORTHO05D000032 7.9e-34 147.5 154 54.5
Sabra07G0002300 Salix brachista HOM05D000184 ORTHO05D000032 1.4e-33 146.7 153 53.6
FAN14G0750 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.5e-32 143.3 141 58.9
TAR626G1815 Trochodendron aralioides HOM05D000184 ORTHO05D000032 1.5e-32 143.3 153 51.0
MD09G1169000 Malus domestica HOM05D000184 ORTHO05D000032 4.3e-32 141.7 142 54.9
MD17G1157800 Malus domestica HOM05D000184 ORTHO05D000032 9.7e-32 140.6 142 52.8
FAN09G2960 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.3e-31 140.2 141 57.4
Prupe.3G027400 Prunus persica HOM05D000184 ORTHO05D000032 1.3e-31 140.2 141 54.6
FvH4_6g36430 Fragaria vesca HOM05D000184 ORTHO05D000032 3.7e-31 138.7 141 57.4
Cpa.g.sc10.14 Carica papaya HOM05D000184 ORTHO05D000032 4.8e-31 138.3 153 51.0
Duzib192G0349 Durio zibethinus HOM05D000184 ORTHO05D000032 8.2e-31 137.5 153 51.0
Manes.06G178000 Manihot esculenta HOM05D000184 ORTHO05D000032 2.4e-30 136.0 153 52.3
RcHm_v2.0_Chr2g0148421 Rosa chinensis HOM05D000184 ORTHO05D000032 9.1e-30 134.0 141 53.9
CiPaw.01G209400 Carya illinoinensis HOM05D000184 ORTHO05D000032 2.6e-29 132.5 153 51.6
Gohir.A05G116080 Gossypium hirsutum HOM05D000184 ORTHO05D000032 5.5e-27 124.8 143 49.7
Gorai.009G120900 Gossypium raimondii HOM05D000184 ORTHO05D000032 1.8e-25 119.8 143 48.3
Gohir.D05G116900 Gossypium hirsutum HOM05D000184 ORTHO05D000032 5.7e-24 114.8 143 47.6
Actinidia38819 Actinidia chinensis HOM05D000184 ORTHO05D000032 1.3e-23 113.6 152 44.7
GSVIVG01029458001 Vitis vinifera HOM05D000184 ORTHO05D000032 1.7e-23 113.2 141 48.9
THA.LOC104822788 Tarenaya hassleriana HOM05D000184 ORTHO05D000032 2.8e-23 112.5 144 44.4
Eucgr.F04055 Eucalyptus grandis HOM05D000184 ORTHO05D000032 1.8e-22 109.8 150 47.3
FAN02G0533 Fragaria x ananassa HOM05D000184 ORTHO05D000032 4.1e-22 108.6 110 60.0
PSO063G6017 Papaver somniferum HOM05D000184 ORTHO05D000032 1.0e-20 104.0 153 45.1
MBI13_g08744_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 1.3e-20 103.6 151 42.4
MBI13_g45276_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 1.3e-20 103.6 151 42.4
Carub.0003s1236 Capsella rubella HOM05D000184 ORTHO05D000032 5.0e-20 101.7 143 42.0
Potri.014G000700 Populus trichocarpa HOM05D000184 ORTHO05D000032 5.0e-20 101.7 84 65.5
Hma1.2p1_0073F.1_g038430 Hydrangea macrophylla HOM05D000184 ORTHO05D000032 1.9e-19 99.8 141 43.3
Aa31LG8G260 Aethionema arabicum HOM05D000184 ORTHO05D000032 4.2e-19 98.6 145 42.1
Gohir.A10G001000 Gossypium hirsutum HOM05D000184 ORTHO05D000032 4.2e-19 98.6 134 45.5
THA.LOC104810280 Tarenaya hassleriana HOM05D000184 ORTHO05D000032 5.5e-19 98.2 144 43.8
AL3G24750 Arabidopsis lyrata HOM05D000184 ORTHO05D000032 9.4e-19 97.4 143 41.3
CARHR087600 Cardamine hirsuta HOM05D000184 ORTHO05D000032 9.4e-19 97.4 140 42.1
FAN05G1546 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.2e-18 97.1 86 65.1
Sp3g11190 Schrenkiella parvula HOM05D000184 ORTHO05D000032 1.2e-18 97.1 143 42.0
Gorai.011G001500 Gossypium raimondii HOM05D000184 ORTHO05D000032 2.1e-18 96.3 134 44.8
PSO170G1752 Papaver somniferum HOM05D000184 ORTHO05D000032 2.1e-18 96.3 153 43.1
AT3G13040 Arabidopsis thaliana HOM05D000184 ORTHO05D000032 4.7e-18 95.1 143 39.9
BraA03t12951Z Brassica rapa HOM05D000184 ORTHO05D000032 6.1e-18 94.7 143 41.3
A03p37970 Brassica napus HOM05D000184 ORTHO05D000032 1.4e-17 93.6 143 41.3
BcaNung06038 Brassica carinata HOM05D000184 ORTHO05D000032 3.0e-17 92.4 143 40.6
BolC3t16879H Brassica oleracea HOM05D000184 ORTHO05D000032 3.0e-17 92.4 143 40.6
PGR102G0371 Punica granatum HOM05D000184 ORTHO05D000032 8.8e-17 90.9 142 41.5
Thhalv10020738m.g Eutrema salsugineum HOM05D000184 ORTHO05D000032 1.1e-16 90.5 144 41.0
A01p40480 Brassica napus HOM05D000184 ORTHO05D000032 7.4e-16 87.8 143 40.6
BcaC09g48291 Brassica carinata HOM05D000184 ORTHO05D000032 9.7e-16 87.4 144 38.9
TWI75G1407 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 1.7e-15 86.7 145 42.8
Nn8g41270 Nelumbo nucifera HOM05D000184 ORTHO05D000032 2.2e-15 86.3 108 46.3
BraA01t04083Z Brassica rapa HOM05D000184 ORTHO05D000032 6.3e-15 84.7 142 38.7
C01p52070 Brassica napus HOM05D000184 ORTHO05D000032 1.1e-14 84.0 143 39.2
BolC1t05150H Brassica oleracea HOM05D000184 ORTHO05D000032 1.1e-14 84.0 143 39.2
Gohir.D10G001200 Gossypium hirsutum HOM05D000184 ORTHO05D000032 2.6e-13 79.3 57 66.7
C03p46070 Brassica napus HOM05D000184 ORTHO05D000032 1.7e-12 76.6 143 36.4
Os06g0703900 Oryza sativa ssp. japonica HOM05D000184 ORTHO05D000032 9.4e-11 70.9 150 35.3
EL10Ac7g18107 Beta vulgaris HOM05D000184 ORTHO05D000032 4.0e-09 65.5 126 39.7
Zm00001eb227200 Zea mays HOM05D000184 ORTHO05D000032 4.0e-09 65.5 107 42.1
AUR62025689 Chenopodium quinoa HOM05D000184 ORTHO05D000032 8.8e-09 64.3 145 39.3
Hund05660 Selenicereus undatus HOM05D000184 ORTHO05D000032 2.6e-08 62.8 142 37.3
Hund18558 Selenicereus undatus HOM05D000184 ORTHO05D000032 5.7e-08 61.6 140 37.9
AUR62001307 Chenopodium quinoa HOM05D000184 ORTHO05D000032 7.5e-08 61.2 146 38.4
Ah.15g094240 Amaranthus hybridus HOM05D000184 ORTHO05D000032 6.3e-07 58.2 127 35.4
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 6.3e-07 58.2 39 69.2
QL11p005732 Quercus lobata HOM05D000184 ORTHO05D000032 5.3e-06 55.1 58 51.7
QL93p2001_0001 Quercus lobata HOM05D000184 ORTHO05D337119 5.3e-06 55.1 58 51.7


User provided reference genes

Program Settings