Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 1.2e-37 159.5 86 100.0
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 6.7e-33 143.7 83 81.9
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 2.2e-31 138.7 83 78.3
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 3.7e-31 137.9 84 79.8
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 3.7e-31 137.9 84 79.8
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 8.2e-31 136.7 84 78.6
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 1.8e-30 135.6 83 77.1
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 4.1e-30 134.4 84 77.4
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 4.1e-30 134.4 84 77.4
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 4.1e-30 134.4 84 77.4
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 2.2e-28 128.6 84 81.0
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 6.5e-28 127.1 84 79.8
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 4.2e-27 124.4 87 73.6
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 2.7e-26 121.7 87 71.3
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 3.6e-26 121.3 88 69.3
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 1.8e-25 119.0 83 69.9
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 3.0e-25 118.2 87 67.8
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 4.0e-25 117.9 77 72.7
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 5.2e-25 117.5 85 67.1
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 5.2e-25 117.5 85 67.1
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 5.2e-25 117.5 82 68.3
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 6.7e-25 117.1 87 77.0
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 8.8e-25 116.7 79 72.2
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 8.8e-25 116.7 85 65.9
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 8.8e-25 116.7 79 72.2
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 1.2e-24 116.3 88 68.2
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 1.5e-24 115.9 76 72.4
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.5e-24 115.9 85 75.3
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 1.5e-24 115.9 85 65.9
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 1.5e-24 115.9 85 65.9
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 1.5e-24 115.9 84 76.2
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 1.5e-24 115.9 87 73.6
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 2.0e-24 115.5 85 68.2
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 4.4e-24 114.4 85 64.7
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 5.7e-24 114.0 85 64.7
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 7.5e-24 113.6 87 64.4
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 7.5e-24 113.6 73 69.9
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 7.5e-24 113.6 73 69.9
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 7.5e-24 113.6 73 69.9
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 1.7e-23 112.5 82 74.4
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 2.2e-23 112.1 97 62.9
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 2.2e-23 112.1 72 69.4
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.2e-23 112.1 72 69.4
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 2.8e-23 111.7 82 69.5
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 3.7e-23 111.3 85 71.8
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 4.8e-23 110.9 82 59.8
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 4.8e-23 110.9 83 65.1
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 6.3e-23 110.5 85 71.8
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 8.3e-23 110.2 84 63.1
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 8.3e-23 110.2 87 62.1
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 1.1e-22 109.8 79 68.4
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 1.1e-22 109.8 84 63.1
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 1.1e-22 109.8 85 61.2
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 1.1e-22 109.8 82 69.5
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 1.4e-22 109.4 100 60.0
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.4e-22 109.4 88 70.5
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 1.8e-22 109.0 89 68.5
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 1.8e-22 109.0 80 71.2
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 1.8e-22 109.0 80 71.2
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 1.8e-22 109.0 87 62.1
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 2.4e-22 108.6 75 74.7
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 2.4e-22 108.6 83 60.2
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 3.1e-22 108.2 87 59.8
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 3.1e-22 108.2 75 65.3
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 3.1e-22 108.2 83 69.9
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 3.1e-22 108.2 83 59.0
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 3.1e-22 108.2 85 61.2
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 4.1e-22 107.8 79 63.3
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 5.3e-22 107.5 78 64.1
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 5.3e-22 107.5 81 61.7
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 5.3e-22 107.5 75 74.7
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 7.0e-22 107.1 75 62.7
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 7.0e-22 107.1 84 65.5
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 9.1e-22 106.7 80 62.5
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 1.2e-21 106.3 87 72.4
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 1.2e-21 106.3 87 62.1
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.2e-21 106.3 85 57.6
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 1.6e-21 105.9 93 58.1
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 1.6e-21 105.9 83 59.0
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 1.6e-21 105.9 91 58.2
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 1.6e-21 105.9 91 58.2
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 2.0e-21 105.5 88 59.1
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 2.0e-21 105.5 84 63.1
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 2.0e-21 105.5 83 57.8
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 3.5e-21 104.8 78 60.3
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 3.5e-21 104.8 96 56.2
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 3.5e-21 104.8 84 58.3
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 3.5e-21 104.8 78 64.1
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 5.9e-21 104.0 84 66.7
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 5.9e-21 104.0 80 62.5
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 5.9e-21 104.0 74 71.6
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 5.9e-21 104.0 83 57.8
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 7.7e-21 103.6 83 61.4
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 1.3e-20 102.8 78 57.7
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 1.3e-20 102.8 74 73.0
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 1.7e-20 102.4 80 66.2
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.7e-20 102.4 83 60.2
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.9e-20 101.7 68 66.2
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 3.8e-20 101.3 108 52.8
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 6.5e-20 100.5 76 71.1
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 8.5e-20 100.1 82 53.7
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 1.1e-19 99.8 87 57.5
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 1.5e-19 99.4 74 67.6
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 1.5e-19 99.4 74 67.6
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 1.5e-19 99.4 83 59.0
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.9e-19 99.0 78 59.0
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 2.5e-19 98.6 67 65.7
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 2.5e-19 98.6 87 66.7
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 3.2e-19 98.2 91 52.7
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 4.2e-19 97.8 86 58.1
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 5.5e-19 97.4 86 59.3
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 7.2e-19 97.1 78 57.7
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 1.6e-18 95.9 86 59.3
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 2.1e-18 95.5 68 67.6
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 2.7e-18 95.1 78 56.4
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 4.7e-18 94.4 72 61.1
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 6.1e-18 94.0 78 55.1
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 6.1e-18 94.0 78 55.1
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 8.0e-18 93.6 86 61.6
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 1.0e-17 93.2 69 72.5
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 1.0e-17 93.2 71 63.4
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 1.8e-17 92.4 67 64.2
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.8e-17 92.4 59 69.5
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.3e-17 92.0 68 63.2
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 2.3e-17 92.0 77 55.8
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 3.0e-17 91.7 70 52.9
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 3.4e-16 88.2 67 58.2
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 5.7e-16 87.4 100 58.0
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 7.5e-16 87.0 74 56.8
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 9.8e-16 86.7 62 61.3
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 1.7e-15 85.9 58 70.7
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 8.3e-15 83.6 70 57.1
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 1.1e-14 83.2 69 47.8
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.8e-14 82.4 55 65.5
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 1.8e-14 82.4 80 51.2
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 3.1e-14 81.6 68 61.8
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 2.7e-13 78.6 60 58.3
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 3.5e-13 78.2 74 52.7
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 3.5e-13 78.2 54 64.8
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 4.5e-13 77.8 71 45.1
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 1.0e-12 76.6 52 63.5
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 2.3e-12 75.5 83 50.6
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 3.8e-12 74.7 98 42.9
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 8.6e-12 73.6 77 50.6
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.1e-11 73.2 44 75.0
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 1.9e-11 72.4 53 62.3
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 7.2e-11 70.5 52 61.5
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 9.5e-11 70.1 49 63.3
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 6.1e-10 67.4 62 46.8
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 1.8e-09 65.9 101 42.6
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.2e-08 63.2 67 47.8
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 7.5e-08 60.5 67 47.8
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 9.8e-08 60.1 59 52.5
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 6.3e-07 57.4 46 56.5
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 8.3e-07 57.0 48 54.2


User provided reference genes

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