Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 6.1e-45 183.7 89 100.0
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 1.6e-21 105.9 56 91.1
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 8.8e-20 100.1 60 78.3
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 3.4e-19 98.2 60 76.7
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 4.4e-19 97.8 56 80.4
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 5.7e-19 97.4 60 76.7
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 5.7e-19 97.4 60 76.7
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 5.7e-19 97.4 56 80.4
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 7.5e-19 97.1 60 75.0
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 1.3e-18 96.3 60 73.3
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 1.7e-18 95.9 60 78.3
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.7e-18 95.9 60 71.7
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 2.2e-18 95.5 60 73.3
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 2.2e-18 95.5 60 73.3
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 2.2e-18 95.5 60 73.3
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 2.8e-18 95.1 60 73.3
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 2.8e-18 95.1 56 78.6
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 2.8e-18 95.1 56 75.0
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 3.7e-18 94.7 60 71.7
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 3.7e-18 94.7 60 71.7
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.8e-18 94.4 56 76.8
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 4.8e-18 94.4 56 76.8
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 4.8e-18 94.4 56 76.8
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 4.8e-18 94.4 60 73.3
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 6.3e-18 94.0 56 76.8
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 6.3e-18 94.0 56 76.8
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 6.3e-18 94.0 56 76.8
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 6.3e-18 94.0 52 82.7
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 8.3e-18 93.6 56 76.8
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 1.1e-17 93.2 56 75.0
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 1.1e-17 93.2 56 73.2
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.1e-17 93.2 60 70.0
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 1.4e-17 92.8 60 73.3
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.8e-17 92.4 56 75.0
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 1.8e-17 92.4 60 73.3
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 4.1e-17 91.3 56 75.0
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 4.1e-17 91.3 60 70.0
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 5.4e-17 90.9 56 71.4
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 7.0e-17 90.5 56 71.4
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 7.0e-17 90.5 60 68.3
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.2e-16 89.7 56 69.6
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.2e-16 89.7 60 68.3
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 1.2e-16 89.7 56 73.2
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 1.6e-16 89.4 56 71.4
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 1.6e-16 89.4 60 68.3
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 1.6e-16 89.4 56 69.6
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 1.6e-16 89.4 56 71.4
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 3.5e-16 88.2 55 70.9
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 5.9e-16 87.4 56 69.6
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 1.0e-15 86.7 56 71.4
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.3e-15 86.3 61 68.9
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.7e-15 85.9 52 73.1
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 2.3e-15 85.5 51 72.5
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 2.3e-15 85.5 56 69.6
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 2.3e-15 85.5 56 67.9
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 2.9e-15 85.1 52 71.2
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 2.9e-15 85.1 57 71.9
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 3.8e-15 84.7 87 49.4
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 5.0e-15 84.3 60 65.0
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 6.6e-15 84.0 56 67.9
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 6.6e-15 84.0 56 67.9
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 6.6e-15 84.0 56 67.9
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 6.6e-15 84.0 56 67.9
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 1.1e-14 83.2 60 63.3
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 1.5e-14 82.8 60 63.3
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 1.5e-14 82.8 60 63.3
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 1.5e-14 82.8 60 63.3
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 1.5e-14 82.8 63 60.3
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 1.5e-14 82.8 56 66.1
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.5e-14 82.8 56 67.9
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 1.9e-14 82.4 52 69.2
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 2.5e-14 82.0 52 69.2
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 2.5e-14 82.0 60 61.7
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 4.2e-14 81.3 52 71.2
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 4.2e-14 81.3 60 61.7
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 5.5e-14 80.9 48 75.0
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 7.2e-14 80.5 54 68.5
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 9.5e-14 80.1 56 67.9
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 1.2e-13 79.7 60 60.0
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 1.2e-13 79.7 56 67.9
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 1.6e-13 79.3 56 60.7
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 1.6e-13 79.3 56 67.9
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 2.1e-13 79.0 56 58.9
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 2.1e-13 79.0 60 60.0
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 2.8e-13 78.6 56 64.3
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 2.8e-13 78.6 60 61.7
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 2.8e-13 78.6 60 61.7
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 2.8e-13 78.6 60 60.0
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 3.6e-13 78.2 44 75.0
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 8.0e-13 77.0 56 57.1
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 8.0e-13 77.0 60 58.3
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.0e-12 76.6 56 62.5
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.0e-12 76.6 56 64.3
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 1.0e-12 76.6 60 56.7
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.4e-12 76.3 60 56.7
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 1.8e-12 75.9 56 64.3
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.8e-12 75.9 56 64.3
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.8e-12 75.9 56 64.3
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.8e-12 75.9 56 64.3
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 1.8e-12 75.9 60 58.3
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.3e-12 75.5 56 55.4
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 4.0e-12 74.7 60 56.7
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 6.8e-12 73.9 60 60.0
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 8.9e-12 73.6 60 60.0
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.2e-11 73.2 60 56.7
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.2e-11 73.2 56 64.3
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 1.2e-11 73.2 60 56.7
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 1.5e-11 72.8 60 56.7
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 3.4e-11 71.6 60 56.7
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 7.5e-11 70.5 60 56.7
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 7.5e-11 70.5 60 58.3
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.3e-10 67.0 52 59.6
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.3e-10 67.0 52 59.6
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 8.3e-10 67.0 61 50.8
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 1.1e-09 66.6 61 50.8
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 2.4e-09 65.5 56 51.8
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 2.4e-09 65.5 52 57.7
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 2.4e-09 65.5 50 58.0
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 3.1e-09 65.1 56 57.1
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 3.1e-09 65.1 56 57.1
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 3.1e-09 65.1 43 72.1
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 9.2e-09 63.5 50 58.0
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 9.2e-09 63.5 50 58.0
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 9.2e-09 63.5 50 58.0
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 9.2e-09 63.5 50 58.0
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 9.2e-09 63.5 50 58.0
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 1.6e-08 62.8 54 50.0
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 2.0e-08 62.4 50 58.0
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 2.0e-08 62.4 49 57.1
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 2.0e-08 62.4 50 58.0
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 2.0e-08 62.4 50 58.0
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 2.0e-08 62.4 50 58.0
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 2.0e-08 62.4 50 58.0
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 2.0e-08 62.4 50 58.0
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 4.5e-08 61.2 52 57.7
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 7.8e-08 60.5 56 57.1
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 6.6e-07 57.4 56 55.4
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 6.6e-07 57.4 35 68.6
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.6e-07 57.0 46 56.5
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 1.5e-06 56.2 61 52.5
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 4.3e-06 54.7 71 43.7
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 5.6e-06 54.3 43 58.1


User provided reference genes

Program Settings