Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 3.3e-181 638.3 330 100.0
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 5.2e-142 508.1 302 85.8
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 1.5e-141 506.5 304 86.2
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 1.3e-140 503.4 302 85.1
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 1.0e-137 493.8 302 84.4
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 1.3e-137 493.4 302 83.8
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.7e-137 493.0 300 83.3
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 3.9e-137 491.9 297 83.8
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 3.9e-137 491.9 302 83.1
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 6.6e-137 491.1 302 83.1
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.5e-136 490.0 300 82.7
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 2.5e-136 489.2 300 82.7
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 5.6e-136 488.0 302 83.1
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 7.3e-136 487.6 311 81.7
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 7.3e-136 487.6 311 81.4
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 9.5e-136 487.3 313 80.8
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 1.2e-135 486.9 303 82.5
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 1.6e-135 486.5 302 83.1
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 2.1e-135 486.1 292 84.9
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 1.1e-134 483.8 302 81.8
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 1.8e-134 483.0 301 82.7
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 1.2e-133 480.3 302 81.8
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 1.5e-133 479.9 302 81.5
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 2.0e-133 479.6 300 82.3
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 4.4e-133 478.4 302 81.1
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 1.3e-132 476.9 302 82.8
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 2.2e-132 476.1 294 84.4
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 4.9e-132 474.9 292 82.5
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 1.4e-131 473.4 302 80.5
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 1.9e-131 473.0 302 78.8
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 1.9e-131 473.0 301 79.7
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 3.2e-131 472.2 302 79.5
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 1.2e-130 470.3 294 79.9
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 1.6e-130 469.9 297 80.5
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 1.6e-130 469.9 302 79.1
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 4.6e-130 468.4 303 78.9
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 4.6e-130 468.4 303 78.9
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 4.6e-130 468.4 302 79.1
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 1.0e-129 467.2 297 79.1
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 1.0e-129 467.2 303 80.2
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 2.3e-129 466.1 303 79.9
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 3.0e-129 465.7 297 79.1
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 3.0e-129 465.7 297 79.1
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 3.0e-129 465.7 297 79.1
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 3.0e-129 465.7 297 79.1
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 3.0e-129 465.7 297 79.1
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 3.9e-129 465.3 302 79.1
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.1e-128 463.8 298 80.5
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 1.1e-128 463.8 302 77.5
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 1.9e-128 463.0 294 82.0
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 1.9e-128 463.0 300 79.7
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 2.5e-128 462.6 297 80.5
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.3e-128 462.2 298 80.2
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.3e-128 462.2 298 80.2
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 4.3e-128 461.8 297 78.5
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 5.6e-128 461.5 302 77.8
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 1.6e-127 459.9 299 80.3
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 6.2e-127 458.0 302 77.5
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 3.1e-126 455.7 297 79.1
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 3.1e-126 455.7 302 77.8
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 4.0e-126 455.3 301 77.4
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 4.0e-126 455.3 297 78.8
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 5.2e-126 454.9 292 79.8
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 5.2e-126 454.9 302 77.8
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 1.5e-125 453.4 302 76.8
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.5e-125 453.4 306 75.8
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 2.0e-125 453.0 300 79.0
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 2.0e-125 453.0 298 78.9
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 3.4e-125 452.2 302 77.2
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 3.4e-125 452.2 300 78.0
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 4.4e-125 451.8 292 80.5
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 4.4e-125 451.8 301 77.1
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 4.4e-125 451.8 300 76.3
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 2.2e-124 449.5 294 78.2
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 2.9e-124 449.1 297 78.8
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 3.8e-124 448.7 295 76.6
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 6.4e-124 448.0 300 77.3
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 8.4e-124 447.6 307 73.0
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.1e-123 447.2 300 74.3
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 2.7e-122 442.6 301 75.4
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 3.9e-121 438.7 302 74.5
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 6.6e-121 438.0 294 76.2
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 1.5e-120 436.8 302 72.2
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 3.3e-120 435.6 299 75.9
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 1.6e-119 433.3 296 76.0
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 1.1e-118 430.6 302 73.5
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 1.1e-118 430.6 302 73.5
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 1.4e-118 430.3 315 69.8
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 5.3e-118 428.3 321 70.1
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 6.9e-118 427.9 292 74.0
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 9.0e-118 427.6 302 74.8
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 3.4e-117 425.6 294 74.1
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 7.8e-114 414.5 246 82.1
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.0e-113 414.1 307 70.7
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 1.3e-113 413.7 270 80.7
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.7e-113 413.3 295 76.6
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 6.6e-113 411.4 301 69.4
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 6.6e-113 411.4 297 73.1
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 8.7e-113 411.0 297 74.1
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 1.5e-112 410.2 391 60.4
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 4.3e-112 408.7 294 69.7
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 4.3e-112 408.7 300 69.7
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 1.3e-111 407.1 299 68.6
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 2.4e-110 402.9 251 84.1
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 1.2e-106 390.6 275 73.1
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 2.1e-106 389.8 339 64.6
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 3.5e-106 389.0 296 67.9
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 1.0e-105 387.5 248 76.2
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 2.3e-105 386.3 252 79.8
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 2.3e-105 386.3 333 64.6
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 7.4e-104 381.3 248 75.8
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 1.6e-103 380.2 266 74.8
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 3.7e-103 379.0 247 74.9
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 2.4e-102 376.3 315 67.6
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 2.4e-102 376.3 339 64.6
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 3.1e-102 375.9 294 70.4
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 1.3e-100 370.5 247 78.5
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 3.0e-97 359.4 236 81.4
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 3.9e-97 359.0 230 77.0
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 4.0e-94 349.0 202 84.7
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 3.8e-92 342.4 202 83.2
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 9.3e-91 337.8 302 61.3
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 3.9e-89 332.4 298 56.7
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 5.1e-89 332.0 252 69.0
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 1.6e-87 327.0 311 54.3
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 1.8e-86 323.6 222 73.4
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 2.0e-85 320.1 303 55.1
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.5e-83 313.2 233 71.7
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 2.5e-83 313.2 305 54.4
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 1.2e-77 294.3 181 81.2
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 1.9e-75 287.0 195 72.8
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 2.8e-71 273.1 232 57.3
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 1.8e-65 253.8 288 44.4
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 1.8e-62 243.8 138 87.7
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 7.7e-61 238.4 163 73.0
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 1.3e-60 237.7 187 67.4
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 1.6e-50 204.1 180 62.8
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 4.3e-35 152.9 309 38.2
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 6.8e-25 119.0 125 56.8
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 5.4e-22 109.4 95 62.1
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 2.6e-08 63.9 60 58.3
HanXRQChr07g0192801 Helianthus annuus HOM05D004887 ORTHO05D225384 5.8e-08 62.8 55 61.8
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 1.7e-07 61.2 28 96.4
HanXRQChr05g0134321 Helianthus annuus HOM05D004887 ORTHO05D025733 3.2e-06 57.0 46 58.7


User provided reference genes

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