Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 8.2e-97 357.1 182 100.0
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 5.2e-51 204.9 186 61.3
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 1.3e-38 163.7 181 50.3
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 3.9e-38 162.2 175 51.4
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 7.3e-29 131.3 145 45.5
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 1.1e-27 127.5 191 37.7
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 2.4e-27 126.3 151 43.7
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 4.0e-27 125.6 138 45.7
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 4.0e-27 125.6 138 45.7
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 6.9e-27 124.8 175 38.3
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 8.9e-27 124.4 178 37.6
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 8.9e-27 124.4 176 40.9
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.2e-26 124.0 96 53.1
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.0e-26 123.2 142 45.1
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 2.0e-26 123.2 125 46.4
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 2.0e-26 123.2 80 62.5
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 2.6e-26 122.9 151 47.7
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 2.6e-26 122.9 101 53.5
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 2.6e-26 122.9 136 49.3
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 4.4e-26 122.1 135 45.2
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 4.4e-26 122.1 162 42.0
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 4.4e-26 122.1 91 56.0
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 4.4e-26 122.1 133 45.1
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 4.4e-26 122.1 178 38.2
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 5.8e-26 121.7 84 61.9
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 5.8e-26 121.7 82 61.0
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 7.6e-26 121.3 135 44.4
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 7.6e-26 121.3 82 61.0
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 7.6e-26 121.3 83 61.4
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 9.9e-26 120.9 183 38.3
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 9.9e-26 120.9 178 39.3
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 9.9e-26 120.9 163 39.9
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 9.9e-26 120.9 90 53.3
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.3e-25 120.6 135 43.0
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.3e-25 120.6 155 43.9
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.3e-25 120.6 155 43.9
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.3e-25 120.6 90 53.3
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.7e-25 120.2 155 41.3
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.7e-25 120.2 93 52.7
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 1.7e-25 120.2 169 38.5
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 1.7e-25 120.2 136 43.4
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.7e-25 120.2 136 43.4
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.2e-25 119.8 90 52.2
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 2.2e-25 119.8 151 43.0
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 2.9e-25 119.4 82 61.0
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 2.9e-25 119.4 135 43.7
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 2.9e-25 119.4 142 43.7
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 2.9e-25 119.4 146 43.2
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 3.8e-25 119.0 101 50.5
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 3.8e-25 119.0 82 59.8
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 3.8e-25 119.0 135 43.7
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 3.8e-25 119.0 151 43.0
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 3.8e-25 119.0 169 39.1
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 4.9e-25 118.6 137 44.5
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 4.9e-25 118.6 137 44.5
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 4.9e-25 118.6 135 45.2
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 6.4e-25 118.2 176 39.8
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 6.4e-25 118.2 129 42.6
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 6.4e-25 118.2 137 45.3
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 6.4e-25 118.2 120 45.8
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 6.4e-25 118.2 141 44.7
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 8.4e-25 117.9 198 35.4
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 8.4e-25 117.9 191 36.6
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 8.4e-25 117.9 135 45.2
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 8.4e-25 117.9 130 45.4
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 8.4e-25 117.9 145 41.4
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 8.4e-25 117.9 145 41.4
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 1.1e-24 117.5 78 60.3
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 1.1e-24 117.5 170 37.6
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.1e-24 117.5 80 60.0
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 1.4e-24 117.1 137 43.1
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 1.4e-24 117.1 137 43.1
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 1.4e-24 117.1 137 43.1
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 1.4e-24 117.1 130 43.8
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.4e-24 117.1 138 41.3
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.4e-24 117.1 137 42.3
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.9e-24 116.7 197 34.0
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.4e-24 116.3 175 36.6
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.4e-24 116.3 78 59.0
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.4e-24 116.3 133 44.4
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 3.2e-24 115.9 97 52.6
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.2e-24 115.9 135 41.5
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 4.2e-24 115.5 113 46.0
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.2e-24 115.5 145 40.7
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 5.4e-24 115.2 78 57.7
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 7.1e-24 114.8 97 51.5
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 7.1e-24 114.8 174 36.2
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 9.3e-24 114.4 135 48.1
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.2e-23 114.0 78 57.7
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 1.6e-23 113.6 78 60.3
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 1.6e-23 113.6 185 36.2
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.6e-23 113.6 78 57.7
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.6e-23 113.6 78 57.7
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.6e-23 113.6 78 57.7
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.6e-23 113.6 78 57.7
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.6e-23 113.6 78 56.4
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.1e-23 113.2 78 61.5
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.7e-23 112.8 174 35.1
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 2.7e-23 112.8 141 42.6
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 2.7e-23 112.8 78 60.3
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 3.5e-23 112.5 149 42.3
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.5e-23 112.5 135 43.7
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 7.8e-23 111.3 82 54.9
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 7.8e-23 111.3 122 45.9
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 1.3e-22 110.5 83 54.2
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 1.3e-22 110.5 78 56.4
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.7e-22 110.2 125 47.2
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 2.3e-22 109.8 120 44.2
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 2.3e-22 109.8 135 45.9
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 5.1e-22 108.6 107 46.7
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 5.1e-22 108.6 143 39.2
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 6.6e-22 108.2 87 55.2
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 1.1e-21 107.5 88 55.7
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 2.5e-21 106.3 107 46.7
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 4.3e-21 105.5 156 37.8
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 5.6e-21 105.1 96 50.0
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 5.6e-21 105.1 78 55.1
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 9.6e-21 104.4 85 48.2
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 1.3e-20 104.0 78 55.1
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 2.8e-20 102.8 78 55.1
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 3.6e-20 102.4 78 55.1
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 4.8e-20 102.1 78 48.7
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 6.2e-20 101.7 78 51.3
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 8.1e-20 101.3 79 53.2
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.1e-19 100.9 78 55.1
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 2.4e-19 99.8 84 48.8
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 2.4e-19 99.8 84 51.2
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 3.1e-19 99.4 81 51.9
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 4.0e-19 99.0 77 50.6
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 4.0e-19 99.0 78 50.0
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.2e-18 97.4 77 53.2
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.2e-18 97.4 141 37.6
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 1.5e-18 97.1 152 36.8
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 5.8e-18 95.1 96 45.8
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 2.9e-17 92.8 65 58.5
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 6.4e-17 91.7 58 62.1
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 6.4e-17 91.7 132 37.9
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 3.2e-16 89.4 72 48.6
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 5.4e-16 88.6 95 45.3
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 2.1e-15 86.7 78 47.4
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 5.6e-13 78.6 109 37.6
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 4.8e-12 75.5 115 35.7
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.1e-11 74.3 80 43.8
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 2.9e-09 66.2 46 63.0
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 5.5e-08 62.0 80 33.8
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 5.5e-08 62.0 79 38.0
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 7.1e-08 61.6 98 34.7
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 9.3e-08 61.2 109 37.6
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.5e-07 59.3 109 37.6
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 1.3e-06 57.4 51 52.9


User provided reference genes

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