Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3813 Acer truncatum HOM05D000086 ORTHO05D000431 7.9e-73 276.9 134 100.0
PGR102G3081 Punica granatum HOM05D000086 ORTHO05D000431 3.2e-21 105.5 127 43.3
Actinidia33852 Actinidia chinensis HOM05D000086 ORTHO05D000431 1.2e-20 103.6 118 44.9
Actinidia03779 Actinidia chinensis HOM05D000086 ORTHO05D000431 6.0e-20 101.3 118 44.1
Prupe.6G085400 Prunus persica HOM05D000086 ORTHO05D000431 6.6e-19 97.8 111 43.2
Hma1.2p1_0846F.1_g227650 Hydrangea macrophylla HOM05D000086 ORTHO05D000431 1.9e-18 96.3 120 47.5
Manes.11G134800 Manihot esculenta HOM05D000086 ORTHO05D000431 2.5e-18 95.9 118 41.5
Manes.04G030200 Manihot esculenta HOM05D000086 ORTHO05D000431 2.1e-17 92.8 118 41.5
QL01p033497 Quercus lobata HOM05D000086 ORTHO05D000431 2.8e-17 92.4 119 44.5
Cfa011443 Carpinus fangiana HOM05D000086 ORTHO05D000431 8.1e-17 90.9 97 44.3
CiPaw.14G072700 Carya illinoinensis HOM05D000086 ORTHO05D000431 2.3e-16 89.4 97 45.4
MELO3C013674.2 Cucumis melo HOM05D000086 ORTHO05D000431 4.0e-16 88.6 121 38.8
MD11G1114600 Malus domestica HOM05D000086 ORTHO05D000431 4.4e-15 85.1 114 37.7
HanXRQChr04g0106871 Helianthus annuus HOM05D000086 ORTHO05D000431 5.8e-15 84.7 125 37.6
TAR369G0670 Trochodendron aralioides HOM05D000086 ORTHO05D000431 5.8e-15 84.7 117 42.7
CsaV3_6G022150 Cucumis sativus L. HOM05D000086 ORTHO05D000431 1.3e-14 83.6 113 38.1
Gohir.A07G095550 Gossypium hirsutum HOM05D000086 ORTHO05D000431 2.2e-14 82.8 118 40.7
Thecc.09G328400 Theobroma cacao HOM05D000086 ORTHO05D000431 2.9e-14 82.4 115 40.9
Gorai.001G107700 Gossypium raimondii HOM05D000086 ORTHO05D000431 3.7e-14 82.0 118 40.7
Solyc11g073170.1 Solanum lycopersicum HOM05D000086 ORTHO05D000431 1.1e-13 80.5 116 39.7
PGSC0003DMG400038762 Solanum tuberosum HOM05D000086 ORTHO05D000431 1.1e-13 80.5 117 41.0
Cc01_g12250 Coffea canephora HOM05D002619 ORTHO05D002804 1.4e-13 80.1 113 38.1
Sed0004360 Sechium edule HOM05D000086 ORTHO05D000431 1.4e-13 80.1 120 39.2
Aqoxy2G02000 Aquilegia oxysepala HOM05D000086 ORTHO05D000431 2.4e-13 79.3 118 36.4
Duzib170G0762 Durio zibethinus HOM05D000086 ORTHO05D000431 3.2e-13 79.0 120 41.7
FAN25G0824 Fragaria x ananassa HOM05D000086 ORTHO05D000431 5.4e-13 78.2 115 38.3
Migut.D02135 Erythranthe guttata HOM05D000086 ORTHO05D000431 1.6e-12 76.6 117 36.8
FvH4_3g34900 Fragaria vesca HOM05D000086 ORTHO05D000431 2.1e-12 76.3 115 38.3
Potri.001G235100 Populus trichocarpa HOM05D000086 ORTHO05D000431 2.1e-12 76.3 118 42.4
ClCG02G020470 Citrullus lanatus HOM05D000086 ORTHO05D000431 2.7e-12 75.9 121 37.2
TWI75G0631 Tripterygium wilfordii HOM05D000086 ORTHO05D000431 1.3e-11 73.6 102 43.1
Lsat_1_v5_gn_9_21761 Lactuca sativa HOM05D000086 ORTHO05D000431 1.7e-11 73.2 129 35.7
RcHm_v2.0_Chr5g0062771 Rosa chinensis HOM05D000086 ORTHO05D000431 1.1e-10 70.5 112 39.3
COL.COLO4_18441 Corchorus olitorius HOM05D000086 ORTHO05D000431 2.1e-09 66.2 120 40.8
Dinv32845 Davidia involucrata HOM05D002619 ORTHO05D002804 2.1e-09 66.2 77 44.2
CsaV3_3G049060 Cucumis sativus L. HOM05D000086 ORTHO05D000431 1.1e-08 63.9 126 27.0
Glyma.11G143350 Glycine max HOM05D000086 ORTHO05D000431 2.4e-08 62.8 100 36.0
Peaxi162Scf00406g00008 Petunia axillaris HOM05D000086 ORTHO05D000431 2.4e-08 62.8 114 39.5
TPR.G1014 Trifolium pratense HOM05D002619 ORTHO05D002804 3.1e-08 62.4 79 45.6
SEGI_11263 Sequoiadendron giganteum HOM05D000086 ORTHO05D000431 4.0e-08 62.0 121 28.9
DCAR_004293 Daucus carota HOM05D000086 ORTHO05D000431 5.2e-08 61.6 126 29.4
HanXRQChr17g0536181 Helianthus annuus HOM05D000086 ORTHO05D000431 8.9e-08 60.8 145 31.0
FvH4_7g07160 Fragaria vesca HOM05D000086 ORTHO05D000431 1.2e-07 60.5 119 31.9
FAN06G4712 Fragaria x ananassa HOM05D000086 ORTHO05D000431 1.2e-07 60.5 119 31.9
FAN10G2109 Fragaria x ananassa HOM05D000086 ORTHO05D000431 1.2e-07 60.5 119 31.9
RcHm_v2.0_Chr1g0337191 Rosa chinensis HOM05D000086 ORTHO05D000431 1.2e-07 60.5 119 30.3
Cfa012455 Carpinus fangiana HOM05D000086 ORTHO05D000431 1.5e-07 60.1 127 27.6
QL12p004909 Quercus lobata HOM05D000086 ORTHO05D000431 1.5e-07 60.1 131 29.0
Cfa011442 Carpinus fangiana HOM05D000086 ORTHO05D000311 2.0e-07 59.7 102 37.3
DCAR_006005 Daucus carota HOM05D002619 ORTHO05D002804 2.6e-07 59.3 55 52.7
FAN01G2933 Fragaria x ananassa HOM05D000086 ORTHO05D000431 2.6e-07 59.3 119 31.1
Nitab4.5_0009394g0040 Nicotiana tabacum HOM05D000086 ORTHO05D000431 3.4e-07 58.9 111 28.8
Thecc.03G225600 Theobroma cacao HOM05D000086 ORTHO05D000431 3.4e-07 58.9 127 27.6
GSVIVG01026703001 Vitis vinifera HOM05D000086 ORTHO05D000431 3.4e-07 58.9 122 30.3
Duzib205G1956 Durio zibethinus HOM05D000086 ORTHO05D000431 4.4e-07 58.5 127 29.1
Phvul.003G284600 Phaseolus vulgaris HOM05D000086 ORTHO05D000431 4.4e-07 58.5 126 29.4
Cpa.g.sc36.190 Carica papaya HOM05D000086 ORTHO05D000431 5.8e-07 58.2 121 30.6
Duzib052G1244 Durio zibethinus HOM05D000086 ORTHO05D008850 5.8e-07 58.2 129 33.3
Phvul.011G067550 Phaseolus vulgaris HOM05D000086 ORTHO05D000431 5.8e-07 58.2 109 36.7
CiPaw.11G094700 Carya illinoinensis HOM05D000086 ORTHO05D000431 7.6e-07 57.8 128 29.7
COL.COLO4_17005 Corchorus olitorius HOM05D000086 ORTHO05D000431 7.6e-07 57.8 133 28.6
MELO3C003420.2 Cucumis melo HOM05D000086 ORTHO05D000431 7.6e-07 57.8 127 26.8
Lj8C303G5 Lonicera japonica HOM05D000086 ORTHO05D000431 7.6e-07 57.8 120 26.7
Nitab4.5_0000256g0140 Nicotiana tabacum HOM05D000086 ORTHO05D000431 7.6e-07 57.8 127 27.6
TWI81G0839 Tripterygium wilfordii HOM05D000086 ORTHO05D000431 7.6e-07 57.8 127 30.7
VMungo1215G0149 Vigna mungo HOM05D000086 ORTHO05D000431 7.6e-07 57.8 126 27.0
Gohir.A12G207900 Gossypium hirsutum HOM05D000086 ORTHO05D000431 1.3e-06 57.0 127 26.8
Sed0008071 Sechium edule HOM05D000086 ORTHO05D000431 1.3e-06 57.0 115 28.7
Actinidia25972 Actinidia chinensis HOM05D000086 ORTHO05D000431 1.7e-06 56.6 129 26.4
Dinv28968 Davidia involucrata HOM05D000086 ORTHO05D000431 1.7e-06 56.6 129 27.1
Glyma.01G095600 Glycine max HOM05D000086 ORTHO05D000431 1.7e-06 56.6 126 27.8
Phvul.002G140300 Phaseolus vulgaris HOM05D000086 ORTHO05D000431 1.7e-06 56.6 126 27.0
CSS0027352 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D000431 2.2e-06 56.2 119 28.6
Glyma.13G332800 Glycine max HOM05D000086 ORTHO05D000431 2.2e-06 56.2 87 39.1
Gohir.D12G210400 Gossypium hirsutum HOM05D000086 ORTHO05D000431 2.2e-06 56.2 115 27.0
Lj2P237T12 Lonicera japonica HOM05D000086 ORTHO05D000431 2.2e-06 56.2 131 30.5
VMungo1127G0100 Vigna mungo HOM05D000086 ORTHO05D000431 2.2e-06 56.2 108 35.2
COL.COLO4_08534 Corchorus olitorius HOM05D000086 ORTHO05D000431 2.9e-06 55.8 115 27.8
Eucgr.B00642 Eucalyptus grandis HOM05D000086 ORTHO05D000431 2.9e-06 55.8 64 43.8
Gorai.008G225900 Gossypium raimondii HOM05D000086 ORTHO05D000431 2.9e-06 55.8 127 27.6
Sopen06g021450 Solanum pennellii HOM05D000086 ORTHO05D000431 2.9e-06 55.8 115 27.0
Sopen06g021460 Solanum pennellii HOM05D000086 ORTHO05D000431 2.9e-06 55.8 115 27.0
Sopen06g021470 Solanum pennellii HOM05D000086 ORTHO05D000431 2.9e-06 55.8 115 27.0
TAR381G1377 Trochodendron aralioides HOM05D000086 ORTHO05D000431 2.9e-06 55.8 118 33.9
Ciclev10013874m.g Citrus clementina HOM05D000086 ORTHO05D000431 3.8e-06 55.5 136 27.2
Nitab4.5_0000592g0040 Nicotiana tabacum HOM05D000086 ORTHO05D000431 3.8e-06 55.5 111 28.8
Nn1g00126 Nelumbo nucifera HOM05D000086 ORTHO05D000431 4.9e-06 55.1 132 25.8
Nitab4.5_0006453g0010 Nicotiana tabacum HOM05D000086 ORTHO05D000431 4.9e-06 55.1 115 28.7
RcHm_v2.0_Chr7g0210051 Rosa chinensis HOM05D000086 ORTHO05D000431 4.9e-06 55.1 117 29.1
Sp1g03170 Schrenkiella parvula HOM05D000086 ORTHO05D003081 4.9e-06 55.1 132 31.1
Carub.0001s0353 Capsella rubella HOM05D000086 ORTHO05D003081 6.4e-06 54.7 115 31.3
MBI05_g38497_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D000431 6.4e-06 54.7 112 30.4
Aqoxy6G00699 Aquilegia oxysepala HOM05D000086 ORTHO05D000431 8.4e-06 54.3 134 31.3
arahy.Tifrunner.gnm1.ann1.30V1YS Arachis hypogaea HOM05D000086 ORTHO05D000295 8.4e-06 54.3 111 34.2
CANSAT21G2419 Cannabis sativa HOM05D000086 ORTHO05D000431 8.4e-06 54.3 136 26.5
Carub.0008s0518 Capsella rubella HOM05D000086 ORTHO05D003081 8.4e-06 54.3 117 29.9
MD06G1035800 Malus domestica HOM05D000086 ORTHO05D000431 8.4e-06 54.3 132 26.5
Potri.003G093100 Populus trichocarpa HOM05D000086 ORTHO05D000431 8.4e-06 54.3 131 27.5
PGSC0003DMG400016326 Solanum tuberosum HOM05D000086 ORTHO05D003081 8.4e-06 54.3 130 30.0


User provided reference genes

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