Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 0.0e+00 1412.5 805 100.0
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 4.4e-219 765.4 815 61.3
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 1.8e-175 620.5 851 46.5
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 6.5e-170 602.1 859 46.6
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 2.5e-169 600.1 833 44.7
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 9.3e-169 598.2 833 44.5
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 2.7e-168 596.7 811 47.3
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 2.2e-162 577.0 747 48.3
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.6e-160 570.9 656 50.3
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 3.6e-160 569.7 816 44.9
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 6.1e-160 568.9 651 53.1
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 2.0e-158 563.9 810 45.9
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 7.4e-158 562.0 815 45.2
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 1.3e-154 551.2 653 51.8
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 3.1e-148 530.0 840 41.3
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 3.2e-145 520.0 809 43.0
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 7.2e-145 518.8 674 47.5
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 5.7e-142 509.2 656 48.3
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 3.7e-141 506.5 815 41.0
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 1.6e-139 501.1 478 59.4
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 7.2e-137 492.3 767 43.0
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 2.7e-136 490.3 809 41.9
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 8.8e-135 485.3 706 42.8
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 4.1e-132 476.5 513 55.0
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 9.1e-132 475.3 843 40.0
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 2.0e-131 474.2 847 39.8
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 6.5e-130 469.2 777 40.9
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 1.6e-128 464.5 843 40.5
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.8e-127 461.1 819 40.5
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 4.4e-126 456.4 843 40.0
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 9.8e-126 455.3 725 42.9
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.8e-124 451.1 843 39.3
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 1.8e-124 451.1 443 55.3
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 3.5e-123 446.8 697 43.0
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 7.8e-123 445.7 667 42.6
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 3.8e-122 443.4 832 38.1
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 3.3e-121 440.3 393 60.6
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 1.2e-120 438.3 416 55.3
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 2.8e-120 437.2 512 49.8
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 4.7e-120 436.4 699 41.2
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 1.4e-119 434.9 487 51.5
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 2.6e-118 430.6 711 42.8
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 3.4e-118 430.3 695 42.0
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 3.4e-118 430.3 445 53.3
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 5.8e-118 429.5 529 48.4
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 5.8e-118 429.5 390 59.0
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 2.2e-117 427.6 376 59.0
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 4.9e-117 426.4 443 54.4
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 4.9e-117 426.4 656 42.1
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 1.1e-116 425.2 733 40.4
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 1.4e-116 424.9 656 41.9
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 2.4e-116 424.1 677 41.2
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 2.4e-116 424.1 524 48.5
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 2.0e-115 421.0 664 42.6
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 2.3e-114 417.5 580 45.7
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 8.6e-114 415.6 705 40.6
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 2.5e-113 414.1 835 36.5
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 5.6e-113 412.9 707 39.2
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 1.6e-112 411.4 379 55.9
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 6.2e-112 409.5 516 47.9
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 1.8e-111 407.9 693 41.1
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 4.0e-111 406.8 876 34.9
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 5.2e-111 406.4 409 53.8
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 6.8e-111 406.0 850 36.4
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 8.9e-111 405.6 873 35.6
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 1.2e-110 405.2 645 42.5
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 1.5e-110 404.8 374 58.3
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 2.6e-110 404.1 383 55.6
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 3.4e-110 403.7 389 56.8
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 4.4e-110 403.3 411 52.3
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 5.8e-110 402.9 712 39.9
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 9.8e-110 402.1 723 38.7
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 9.8e-110 402.1 820 36.0
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 1.3e-109 401.7 853 35.4
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 1.2e-107 395.2 849 35.6
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 2.1e-107 394.4 522 45.2
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 1.3e-106 391.7 888 35.0
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 2.3e-106 391.0 398 52.3
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 1.9e-105 387.9 388 53.9
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 1.9e-105 387.9 388 53.9
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 4.3e-105 386.7 391 54.7
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 9.5e-105 385.6 386 53.9
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 8.1e-104 382.5 385 53.8
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 3.1e-103 380.6 688 38.7
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 1.2e-102 378.6 343 57.4
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 4.4e-102 376.7 653 40.0
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 1.7e-101 374.8 382 52.9
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 2.4e-100 370.9 613 40.3
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 4.1e-100 370.2 389 51.9
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 4.1e-100 370.2 389 51.9
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 4.1e-100 370.2 391 51.4
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 1.2e-99 368.6 389 51.4
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 2.3e-98 364.4 402 49.3
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 3.0e-98 364.0 623 39.3
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 6.6e-98 362.8 391 51.2
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 1.9e-97 361.3 372 53.8
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 3.3e-97 360.5 544 42.1
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 3.3e-97 360.5 360 53.1
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 2.1e-96 357.8 402 48.5
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 4.0e-95 353.6 421 47.0
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 6.8e-95 352.8 366 52.2
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 9.9e-94 349.0 473 43.3
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 1.3e-93 348.6 473 43.3
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 9.2e-92 342.4 350 52.6
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 1.9e-84 318.2 628 36.6
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 8.7e-82 309.3 271 62.0
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 2.1e-80 304.7 630 36.2
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 4.2e-76 290.4 545 39.1
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 1.2e-67 262.3 414 41.5
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 3.5e-67 260.8 237 57.0
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 1.5e-62 245.4 238 53.4
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 9.3e-60 236.1 407 41.0
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 1.3e-56 225.7 372 33.6
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 9.0e-55 219.5 329 40.1
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 9.0e-55 219.5 303 39.6
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 2.1e-51 208.4 261 43.3
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 3.3e-49 201.1 481 31.8
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 5.1e-42 177.2 208 48.6
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 1.5e-38 165.6 123 69.9
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 9.4e-36 156.4 113 67.3
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 6.1e-35 153.7 152 56.6
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 3.8e-29 134.4 149 49.7
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 1.5e-28 132.5 458 29.3
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 1.9e-20 105.5 106 52.8
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 9.4e-20 103.2 315 25.7
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 9.4e-20 103.2 160 36.9
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 2.1e-19 102.1 83 61.4
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 8.3e-16 90.1 115 45.2
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 2.4e-15 88.6 63 63.5
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 8.6e-13 80.1 55 70.9
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 8.6e-13 80.1 55 70.9
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 1.6e-11 75.9 206 25.2
C07p28110 Brassica napus HOM05D008189 ORTHO05D031905 9.8e-09 66.6 71 49.3
QL01p034573 Quercus lobata HOM05D005647 ORTHO05D006968 1.3e-08 66.2 64 59.4
QL01p034582 Quercus lobata HOM05D005647 ORTHO05D006968 1.7e-08 65.9 247 30.4
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 3.5e-06 58.2 87 41.4


User provided reference genes

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