Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3765 Acer truncatum HOM05D007431 ORTHO05D008438 2.8e-84 315.8 247 100.0
Ciclev10028956m.g Citrus clementina HOM05D007431 ORTHO05D008438 9.3e-19 98.2 177 44.6
Thecc.03G012200 Theobroma cacao HOM05D007431 ORTHO05D008438 4.3e-16 89.4 142 47.2
Thecc.09G259600 Theobroma cacao HOM05D007431 ORTHO05D008438 5.7e-16 89.0 258 46.5
Cpa.g.sc139.17 Carica papaya HOM05D007431 ORTHO05D008438 7.4e-16 88.6 127 46.5
Gohir.A03G036200 Gossypium hirsutum HOM05D007431 ORTHO05D008438 1.3e-15 87.8 137 43.8
THA.LOC104799471 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 2.1e-15 87.0 144 45.8
TAR369G0100 Trochodendron aralioides HOM05D007431 ORTHO05D008438 2.1e-15 87.0 140 48.6
Dinv06340 Davidia involucrata HOM05D007431 ORTHO05D008438 1.1e-14 84.7 139 46.8
TAR623G0663 Trochodendron aralioides HOM05D007431 ORTHO05D008438 1.1e-14 84.7 130 49.2
CANSAT11G1515 Cannabis sativa HOM05D007431 ORTHO05D008438 5.3e-14 82.4 120 47.5
CsaV3_6G021930 Cucumis sativus L. HOM05D021867 ORTHO05D008438 2.6e-13 80.1 59 71.2
Sed0011387 Sechium edule HOM05D007431 ORTHO05D008438 2.6e-13 80.1 67 62.7
THA.LOC104814853 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 4.5e-13 79.3 141 44.0
Nn2g12944 Nelumbo nucifera HOM05D007431 ORTHO05D008438 1.3e-12 77.8 157 43.3
CSS0032205 Camellia sinensis var. sinensis HOM05D007431 ORTHO05D008438 2.2e-12 77.0 92 50.0
CiPaw.14G074700 Carya illinoinensis HOM05D023024 ORTHO05D008438 2.2e-12 77.0 119 46.2
MD11G1119300 Malus domestica HOM05D016629 ORTHO05D008438 2.9e-12 76.6 146 41.8
Potri.019G095600 Populus trichocarpa HOM05D007431 ORTHO05D008438 2.9e-12 76.6 142 39.4
Eucgr.B01149 Eucalyptus grandis HOM05D007431 ORTHO05D008438 3.8e-12 76.3 141 40.4
Prupe.6G089500 Prunus persica HOM05D016629 ORTHO05D008438 3.8e-12 76.3 95 52.6
Sed0003904 Sechium edule HOM05D007431 ORTHO05D008438 3.8e-12 76.3 153 37.3
Gohir.D03G132100 Gossypium hirsutum HOM05D007431 ORTHO05D008438 5.0e-12 75.9 140 40.7
Gorai.003G139000 Gossypium raimondii HOM05D007431 ORTHO05D008438 5.0e-12 75.9 140 40.7
Duzib168G1071 Durio zibethinus HOM05D007431 ORTHO05D008438 8.4e-12 75.1 142 42.3
ClCG02G020690 Citrullus lanatus HOM05D021867 ORTHO05D008438 1.1e-11 74.7 144 40.3
Dinv32831 Davidia involucrata HOM05D001089 ORTHO05D008438 1.4e-11 74.3 131 41.2
Manes.07G083300 Manihot esculenta HOM05D007431 ORTHO05D008438 1.9e-11 73.9 64 62.5
THA.LOC104810823 Tarenaya hassleriana HOM05D007431 ORTHO05D008438 1.9e-11 73.9 138 42.0
Sc12g0001910 Simmondsia chinensis HOM05D007431 ORTHO05D008438 2.5e-11 73.6 134 46.3
TWI53G0129 Tripterygium wilfordii HOM05D007431 ORTHO05D008438 2.5e-11 73.6 99 50.5
Aa31LG1G12150 Aethionema arabicum HOM05D007431 ORTHO05D008438 3.2e-11 73.2 143 40.6
AT1G75335 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 4.2e-11 72.8 70 60.0
HanXRQChr14g0439961 Helianthus annuus HOM05D007431 ORTHO05D008438 4.2e-11 72.8 92 47.8
Lj1P179T36 Lonicera japonica HOM05D007431 ORTHO05D008438 4.2e-11 72.8 86 52.3
A02p06640 Brassica napus HOM05D007431 ORTHO05D008438 5.5e-11 72.4 59 66.1
C02p11930 Brassica napus HOM05D007431 ORTHO05D008438 5.5e-11 72.4 59 66.1
BraA02t05746Z Brassica rapa HOM05D007431 ORTHO05D008438 5.5e-11 72.4 59 66.1
BcaB05g22609 Brassica carinata HOM05D007431 ORTHO05D008438 7.2e-11 72.0 63 63.5
Cfa011407 Carpinus fangiana HOM05D023024 ORTHO05D008438 9.3e-11 71.6 125 44.8
AUR62034380 Chenopodium quinoa HOM05D007431 ORTHO05D008438 9.3e-11 71.6 139 40.3
Actinidia00802 Actinidia chinensis HOM05D007431 ORTHO05D008438 1.2e-10 71.2 80 55.0
Carub.0002s2217 Capsella rubella HOM05D007431 ORTHO05D008438 1.2e-10 71.2 79 54.4
COL.COLO4_18404 Corchorus olitorius HOM05D007431 ORTHO05D008438 1.2e-10 71.2 146 43.8
MD03G1106700 Malus domestica HOM05D016629 ORTHO05D008438 1.6e-10 70.9 148 40.5
BolC2t07290H Brassica oleracea HOM05D007431 ORTHO05D008438 2.7e-10 70.1 62 61.3
Psat6g020440 Pisum sativum HOM05D007431 ORTHO05D008438 2.7e-10 70.1 137 38.7
Hma1.2p1_0321F.1_g124110 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 3.5e-10 69.7 89 51.7
Aa31LG4G15040 Aethionema arabicum HOM05D007431 ORTHO05D008438 4.6e-10 69.3 115 44.3
AT5G60030 Arabidopsis thaliana HOM05D007431 ORTHO05D008438 4.6e-10 69.3 69 58.0
RhsimUnG0043300 Rhododendron simsii HOM05D002794 ORTHO05D008438 4.6e-10 69.3 70 52.9
Sp6g21690 Schrenkiella parvula HOM05D007431 ORTHO05D008438 4.6e-10 69.3 79 54.4
Hma1.2p1_0321F.1_g124100 Hydrangea macrophylla HOM05D007431 ORTHO05D008438 6.1e-10 68.9 115 43.5
TPR.G26566 Trifolium pratense HOM05D007431 ORTHO05D008438 6.1e-10 68.9 142 38.7
Medtr1g016270 Medicago truncatula HOM05D007431 ORTHO05D008438 7.9e-10 68.6 133 40.6
MELO3C025719.2 Cucumis melo HOM05D021867 ORTHO05D008438 1.0e-09 68.2 140 39.3
arahy.Tifrunner.gnm1.ann1.C9XA4X Arachis hypogaea HOM05D007431 ORTHO05D008438 1.3e-09 67.8 138 37.0
Lsat_1_v5_gn_2_80021 Lactuca sativa HOM05D007431 ORTHO05D008438 1.3e-09 67.8 63 57.1
Sed0014169 Sechium edule HOM05D007431 ORTHO05D008438 1.3e-09 67.8 60 66.7
MBI15_g23248_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 2.3e-09 67.0 84 51.2
PSO339G3784 Papaver somniferum HOM05D007431 ORTHO05D008438 3.9e-09 66.2 73 50.7
PSO384G2622 Papaver somniferum HOM05D007431 ORTHO05D008438 3.9e-09 66.2 73 50.7
Potri.013G126701 Populus trichocarpa HOM05D007431 ORTHO05D008438 3.9e-09 66.2 93 41.9
Sabra19G0107900 Salix brachista HOM05D007431 ORTHO05D008438 6.7e-09 65.5 151 37.1
Haze_02139 Corylus avellana HOM05D023024 ORTHO05D008438 8.7e-09 65.1 181 35.4
Haze_23978 Corylus avellana HOM05D023024 ORTHO05D008438 8.7e-09 65.1 128 39.8
Lsat_1_v5_gn_8_91980 Lactuca sativa HOM05D007431 ORTHO05D008438 8.7e-09 65.1 92 47.8
Sabra13G0105800 Salix brachista HOM05D007431 ORTHO05D008438 8.7e-09 65.1 112 38.4
VMungo0647G2370 Vigna mungo HOM05D007431 ORTHO05D008438 8.7e-09 65.1 172 34.3
Ah.15g096430 Amaranthus hybridus HOM05D007431 ORTHO05D008438 1.1e-08 64.7 132 42.4
Ca_13166_v3 Cicer arietinum L. HOM05D007431 ORTHO05D008438 1.1e-08 64.7 134 38.8
DCAR_003389 Daucus carota HOM05D007431 ORTHO05D008438 1.5e-08 64.3 138 39.1
Nitab4.5_0002380g0010 Nicotiana tabacum HOM05D015294 ORTHO05D018867 1.5e-08 64.3 61 52.5
CDE01G0792 Ceratophyllum demersum HOM05D007431 ORTHO05D008438 1.9e-08 63.9 62 58.1
ECA238G2926 Erigeron canadensis HOM05D007431 ORTHO05D008438 1.9e-08 63.9 152 38.2
MBI11_g07544_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 1.9e-08 63.9 128 39.1
MBI18_g47623_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 1.9e-08 63.9 84 48.8
AUR62022321 Chenopodium quinoa HOM05D007431 ORTHO05D008438 2.5e-08 63.5 131 38.9
Glyma.17G228900 Glycine max HOM05D007431 ORTHO05D008438 5.7e-08 62.4 100 42.0
Nn2g10588 Nelumbo nucifera HOM05D007431 ORTHO05D008438 5.7e-08 62.4 62 54.8
A03p11360 Brassica napus HOM05D007431 ORTHO05D008438 7.4e-08 62.0 89 43.8
DCAR_011227 Daucus carota HOM05D007431 ORTHO05D008438 7.4e-08 62.0 120 41.7
DCAR_011228 Daucus carota HOM05D007431 ORTHO05D008438 7.4e-08 62.0 120 41.7
Lalb_Chr24g0399681 Lupinus albus HOM05D007431 ORTHO05D008438 7.4e-08 62.0 140 38.6
PGR102G0834 Punica granatum HOM05D007431 ORTHO05D008438 9.7e-08 61.6 182 30.8
BraA03t10450Z Brassica rapa HOM05D007431 ORTHO05D008438 1.3e-07 61.2 128 38.3
Carub.0008s2073 Capsella rubella HOM05D007431 ORTHO05D008438 1.3e-07 61.2 135 35.6
CARHR068680 Cardamine hirsuta HOM05D007431 ORTHO05D008438 1.3e-07 61.2 93 40.9
AL8G36620 Arabidopsis lyrata HOM05D007431 ORTHO05D008438 1.6e-07 60.8 137 38.0
Phvul.001G035400 Phaseolus vulgaris HOM05D007431 ORTHO05D008438 1.6e-07 60.8 103 40.8
EL10Ac7g15930 Beta vulgaris HOM05D008034 ORTHO05D010051 2.8e-07 60.1 70 48.6
BolC3t13774H Brassica oleracea HOM05D007431 ORTHO05D008438 3.7e-07 59.7 121 42.1
Lalb_Chr22g0356011 Lupinus albus HOM05D007431 ORTHO05D008438 4.8e-07 59.3 160 35.6
MBI15_g23247_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 4.8e-07 59.3 122 37.7
Aqoxy4G03128 Aquilegia oxysepala HOM05D007431 ORTHO05D008438 8.2e-07 58.5 140 38.6
C03p13110 Brassica napus HOM05D007431 ORTHO05D008438 8.2e-07 58.5 145 37.9
Glyma.14G094600 Glycine max HOM05D007431 ORTHO05D008438 8.2e-07 58.5 174 35.1
MBI15_g23251_MAGBIO Magnolia biondii HOM05D007431 ORTHO05D008438 1.1e-06 58.2 132 37.1
CDE02G3020 Ceratophyllum demersum HOM05D007431 ORTHO05D008438 1.4e-06 57.8 132 37.1
Lj3g0021288 Lotus japonicus HOM05D002777 ORTHO05D001516 2.4e-06 57.0 65 50.8
Lj5g0005730 Lotus japonicus HOM05D007431 ORTHO05D008438 2.4e-06 57.0 131 38.2
Phvul.001G035300 Phaseolus vulgaris HOM05D007431 ORTHO05D008438 5.3e-06 55.8 124 36.3
MBI05_g12085_MAGBIO Magnolia biondii HOM05D053393 ORTHO05D008438 9.0e-06 55.1 87 44.8
MBI05_g28126_MAGBIO Magnolia biondii HOM05D053393 ORTHO05D008438 9.0e-06 55.1 87 44.8
Psat2g042560 Pisum sativum HOM05D007431 ORTHO05D008438 9.0e-06 55.1 57 59.6


User provided reference genes

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