Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3750 Acer truncatum HOM05D003732 ORTHO05D004965 1.0e-168 596.7 298 100.0
Ciclev10028610m.g Citrus clementina HOM05D003732 ORTHO05D004965 7.2e-151 537.3 298 87.9
Manes.11G138400 Manihot esculenta HOM05D003732 ORTHO05D004965 4.4e-148 528.1 298 86.6
Cpa.g.sc139.33 Carica papaya HOM05D003732 ORTHO05D004965 6.4e-147 524.2 298 84.6
QL01p035526 Quercus lobata HOM05D003732 ORTHO05D004965 1.1e-146 523.5 297 85.2
Cfa011398 Carpinus fangiana HOM05D003732 ORTHO05D004965 3.2e-146 521.9 298 85.2
COL.COLO4_18395 Corchorus olitorius HOM05D003732 ORTHO05D004965 9.2e-146 520.4 298 84.2
Dinv06348 Davidia involucrata HOM05D003732 ORTHO05D004965 4.6e-145 518.1 298 84.2
Thecc.09G335200 Theobroma cacao HOM05D003732 ORTHO05D004965 7.8e-145 517.3 298 83.6
Duzib168G0288 Durio zibethinus HOM05D003732 ORTHO05D004965 2.3e-144 515.8 298 83.2
Haze_23969 Corylus avellana HOM05D003732 ORTHO05D004965 5.0e-144 514.6 298 84.2
CSS0050219 Camellia sinensis var. sinensis HOM05D003732 ORTHO05D004965 4.3e-143 511.5 298 82.6
GSVIVG01025089001 Vitis vinifera HOM05D003732 ORTHO05D004965 5.6e-143 511.1 298 83.2
Gorai.003G139600 Gossypium raimondii HOM05D003732 ORTHO05D004965 1.2e-142 510.0 298 82.6
MD03G1107400 Malus domestica HOM05D003732 ORTHO05D004965 3.6e-142 508.4 297 82.8
Gohir.D03G132600 Gossypium hirsutum HOM05D003732 ORTHO05D004965 4.7e-142 508.1 298 82.2
MELO3C026850.2 Cucumis melo HOM05D003732 ORTHO05D004965 6.2e-142 507.7 298 82.2
Gohir.A03G035700 Gossypium hirsutum HOM05D003732 ORTHO05D004965 1.4e-141 506.5 300 82.3
CsaV3_1G012760 Cucumis sativus L. HOM05D003732 ORTHO05D004965 5.2e-141 504.6 298 81.2
Potri.001G233300 Populus trichocarpa HOM05D003732 ORTHO05D004965 1.5e-140 503.1 298 81.9
TAR633G0632 Trochodendron aralioides HOM05D003732 ORTHO05D004965 1.5e-140 503.1 298 82.2
CiPaw.13G104000 Carya illinoinensis HOM05D003732 ORTHO05D004965 2.0e-140 502.7 293 82.6
RcHm_v2.0_Chr5g0061771 Rosa chinensis HOM05D003732 ORTHO05D004965 4.4e-140 501.5 298 81.2
TWI79G1305 Tripterygium wilfordii HOM05D003732 ORTHO05D004965 4.4e-140 501.5 298 81.2
AUR62009702 Chenopodium quinoa HOM05D003732 ORTHO05D004965 7.5e-140 500.7 298 80.2
AUR62036244 Chenopodium quinoa HOM05D003732 ORTHO05D004965 1.3e-139 500.0 298 80.5
Sed0004042 Sechium edule HOM05D003732 ORTHO05D004965 1.3e-139 500.0 298 81.5
PGR102G1443 Punica granatum HOM05D003732 ORTHO05D004965 1.7e-139 499.6 298 81.2
Prupe.6G090200 Prunus persica HOM05D003732 ORTHO05D004965 2.9e-139 498.8 297 81.8
FvH4_3g34120 Fragaria vesca HOM05D003732 ORTHO05D004965 4.9e-139 498.0 298 80.5
CSS0010801 Camellia sinensis var. sinensis HOM05D003732 ORTHO05D004965 6.4e-139 497.7 327 75.5
Migut.D02165 Erythranthe guttata HOM05D003732 ORTHO05D004965 1.1e-138 496.9 298 80.5
Hma1.2p1_2042F.1_g312240 Hydrangea macrophylla HOM05D003732 ORTHO05D004965 1.4e-138 496.5 320 77.2
Oeu051855.1 Olea europaea HOM05D003732 ORTHO05D004965 1.4e-138 496.5 298 81.2
vmacro14491 Vaccinium macrocarpon HOM05D003732 ORTHO05D004965 2.4e-138 495.7 316 76.9
EL10Ac7g15885 Beta vulgaris HOM05D003732 ORTHO05D004965 4.1e-138 495.0 298 78.9
Aa31LG4G14990 Aethionema arabicum HOM05D003732 ORTHO05D004965 2.0e-137 492.7 298 79.5
Nn2g10611 Nelumbo nucifera HOM05D003732 ORTHO05D004965 2.0e-137 492.7 298 79.5
TPR.G11613 Trifolium pratense HOM05D003732 ORTHO05D004965 6.0e-137 491.1 298 80.5
Hund18963 Selenicereus undatus HOM05D003732 ORTHO05D004965 7.8e-137 490.7 298 78.9
AT3G45770 Arabidopsis thaliana HOM05D003732 ORTHO05D004965 1.0e-136 490.3 298 78.9
Cc01_g11890 Coffea canephora HOM05D003732 ORTHO05D004965 1.7e-136 489.6 298 79.5
Aqoxy4G03155 Aquilegia oxysepala HOM05D003732 ORTHO05D004965 2.3e-136 489.2 298 79.2
Nitab4.5_0004465g0030 Nicotiana tabacum HOM05D003732 ORTHO05D004965 2.3e-136 489.2 306 76.5
Nitab4.5_0003743g0020 Nicotiana tabacum HOM05D003732 ORTHO05D004965 3.9e-136 488.4 306 76.8
Medtr2g095840 Medicago truncatula HOM05D003732 ORTHO05D004965 6.6e-136 487.6 298 80.2
ECA236G0640 Erigeron canadensis HOM05D003732 ORTHO05D004965 8.6e-136 487.3 298 78.2
Carub.0005s1163 Capsella rubella HOM05D003732 ORTHO05D004965 1.1e-135 486.9 298 78.5
CARHR149900 Cardamine hirsuta HOM05D003732 ORTHO05D004965 1.5e-135 486.5 298 78.2
Thhalv10002573m.g Eutrema salsugineum HOM05D003732 ORTHO05D004965 1.5e-135 486.5 298 78.5
FAN11G1631 Fragaria x ananassa HOM05D003732 ORTHO05D004965 1.5e-135 486.5 317 75.7
MBI19_g13322_MAGBIO Magnolia biondii HOM05D003732 ORTHO05D004965 1.5e-135 486.5 298 78.9
PGSC0003DMG400025357 Solanum tuberosum HOM05D003732 ORTHO05D004965 1.5e-135 486.5 298 77.2
Sp5g15750 Schrenkiella parvula HOM05D003732 ORTHO05D004965 1.9e-135 486.1 298 78.9
SpUn0096_0020 Schrenkiella parvula HOM05D003732 ORTHO05D004965 1.9e-135 486.1 298 78.9
Solyc11g072640.3 Solanum lycopersicum HOM05D003732 ORTHO05D004965 2.5e-135 485.7 298 77.2
Ca_01368_v3 Cicer arietinum L. HOM05D003732 ORTHO05D004965 3.3e-135 485.3 298 78.5
AL5G24450 Arabidopsis lyrata HOM05D003732 ORTHO05D004965 7.3e-135 484.2 298 78.2
Glyma.13G330100 Glycine max HOM05D003732 ORTHO05D004965 2.1e-134 482.6 298 78.9
Sopen11g030310 Solanum pennellii HOM05D003732 ORTHO05D004965 2.1e-134 482.6 298 76.5
FAN21G0728 Fragaria x ananassa HOM05D003732 ORTHO05D004965 3.6e-134 481.9 317 75.1
Phvul.L001386 Phaseolus vulgaris HOM05D003732 ORTHO05D004965 3.6e-134 481.9 298 78.9
BcaC09g49713 Brassica carinata HOM05D003732 ORTHO05D004965 8.1e-134 480.7 298 77.9
SGA_v2.0_scaffold316G48397 Striga asiatica HOM05D003732 ORTHO05D004965 8.1e-134 480.7 332 71.7
Sabra16G0139500 Salix brachista HOM05D003732 ORTHO05D004965 1.4e-133 479.9 319 75.9
VMungo1080G0314 Vigna mungo HOM05D003732 ORTHO05D004965 1.4e-133 479.9 298 79.2
FAN16G2257 Fragaria x ananassa HOM05D003732 ORTHO05D004965 3.1e-133 478.8 317 74.4
HPP92_018603 Vanilla planifolia HOM05D003732 ORTHO05D004965 4.0e-133 478.4 298 76.5
ATR0594G008 Amborella trichopoda HOM05D003732 ORTHO05D004965 1.2e-132 476.9 298 77.2
arahy.Tifrunner.gnm1.ann1.B493EM Arachis hypogaea HOM05D003732 ORTHO05D004965 1.5e-132 476.5 313 75.4
Psat5g281400 Pisum sativum HOM05D003732 ORTHO05D004965 1.5e-132 476.5 298 77.5
ClCG03G002100 Citrullus lanatus HOM05D003732 ORTHO05D004965 2.0e-132 476.1 307 77.2
Lj3g0021313 Lotus japonicus HOM05D003732 ORTHO05D004965 2.0e-132 476.1 298 78.5
C01p33680 Brassica napus HOM05D003732 ORTHO05D004965 4.4e-132 474.9 299 76.9
CSS0019034 Camellia sinensis var. sinensis HOM05D003732 ORTHO05D004965 4.4e-132 474.9 322 74.5
arahy.Tifrunner.gnm1.ann1.58CB50 Arachis hypogaea HOM05D003732 ORTHO05D004965 5.8e-132 474.6 298 77.9
BcaB05g24098 Brassica carinata HOM05D003732 ORTHO05D004965 7.5e-132 474.2 298 76.8
A01p26450 Brassica napus HOM05D003732 ORTHO05D004965 9.8e-132 473.8 299 76.6
BraA01t02569Z Brassica rapa HOM05D003732 ORTHO05D004965 9.8e-132 473.8 299 76.6
Lj2C1044T10 Lonicera japonica HOM05D003732 ORTHO05D004965 1.7e-131 473.0 381 64.3
PSO384G0746 Papaver somniferum HOM05D003732 ORTHO05D004965 1.7e-131 473.0 298 74.8
Lsat_1_v5_gn_8_76381 Lactuca sativa HOM05D003732 ORTHO05D004965 6.4e-131 471.1 294 75.9
PSO339G6685 Papaver somniferum HOM05D003732 ORTHO05D004965 6.4e-131 471.1 298 74.5
CANSAT54G2866 Cannabis sativa HOM05D003732 ORTHO05D004965 1.1e-130 470.3 317 73.8
HanXRQChr06g0175491 Helianthus annuus HOM05D003732 ORTHO05D004965 2.4e-130 469.2 298 75.5
Zm00001eb171040 Zea mays HOM05D003732 ORTHO05D004965 6.0e-129 464.5 300 74.7
Peaxi162Scf00616g00312 Petunia axillaris HOM05D003732 ORTHO05D004965 7.8e-129 464.2 289 76.5
BolC1t03315H Brassica oleracea HOM05D003732 ORTHO05D004965 3.9e-128 461.8 286 77.6
DCAR_005290 Daucus carota HOM05D003732 ORTHO05D004965 5.1e-128 461.5 298 74.2
HanXRQChr05g0133971 Helianthus annuus HOM05D003732 ORTHO05D004965 3.3e-127 458.8 298 73.5
unitig_736.g22424 Utricularia gibba HOM05D003732 ORTHO05D004965 5.6e-127 458.0 298 73.2
FAN25G0838 Fragaria x ananassa HOM05D003732 ORTHO05D004965 7.3e-127 457.6 298 75.5
HanXRQChr05g0133981 Helianthus annuus HOM05D003732 ORTHO05D004965 1.1e-125 453.8 297 73.1
Thhalv10025585m.g Eutrema salsugineum HOM05D003732 ORTHO05D004965 2.3e-125 452.6 302 72.5
Ah.15g096680 Amaranthus hybridus HOM05D003732 ORTHO05D004965 2.0e-124 449.5 267 79.0
SalBow3G0013 Salvia bowleyana HOM05D003732 ORTHO05D004965 3.4e-124 448.7 283 76.7
PSO170G1826 Papaver somniferum HOM05D003732 ORTHO05D004965 3.9e-120 435.3 298 68.5
CAN.G84.24 Capsicum annuum HOM05D003732 ORTHO05D004965 1.6e-118 429.9 298 69.1
CDE09G1079 Ceratophyllum demersum HOM05D003732 ORTHO05D004965 1.5e-116 423.3 267 75.7
Nitab4.5_0004465g0010 Nicotiana tabacum HOM05D003732 ORTHO05D004965 3.8e-115 418.7 293 70.0
Nitab4.5_0004465g0020 Nicotiana tabacum HOM05D003732 ORTHO05D004965 1.6e-113 413.3 298 68.1
CAN.G84.25 Capsicum annuum HOM05D003732 ORTHO05D004965 2.7e-113 412.5 298 68.8
Sopen12g032610 Solanum pennellii HOM05D003732 ORTHO05D004965 2.7e-113 412.5 298 67.4
Solyc12g096780.2 Solanum lycopersicum HOM05D003732 ORTHO05D004965 5.1e-112 408.3 298 67.1
Nitab4.5_0003743g0010 Nicotiana tabacum HOM05D003732 ORTHO05D004965 3.6e-110 402.1 298 68.1
Sopen11g030320 Solanum pennellii HOM05D003732 ORTHO05D004965 6.2e-110 401.4 298 65.8
Sc06g0008130 Simmondsia chinensis HOM05D003732 ORTHO05D004965 1.0e-104 384.0 227 82.4
CAN.G84.23 Capsicum annuum HOM05D003732 ORTHO05D004965 3.4e-100 369.0 284 64.8
SEGI_28331 Sequoiadendron giganteum HOM05D003732 ORTHO05D004965 2.1e-97 359.8 253 68.0
Peaxi162Scf00616g00313 Petunia axillaris HOM05D003732 ORTHO05D004965 5.1e-96 355.1 271 66.4
Rhsim01G0223000 Rhododendron simsii HOM05D003732 ORTHO05D004965 5.1e-96 355.1 315 60.6
SMO367G0374 Selaginella moellendorffii HOM05D003732 ORTHO05D004965 3.1e-93 345.9 298 57.0
ATR0594G235 Amborella trichopoda HOM05D003732 ORTHO05D004965 1.7e-91 340.1 218 74.8
Pp3c9_8960 Physcomitrium patens HOM05D003732 ORTHO05D004965 3.8e-91 339.0 298 55.0
Peaxi162Scf00616g00319 Petunia axillaris HOM05D003732 ORTHO05D004965 1.1e-90 337.4 299 59.5
BcaB05g22412 Brassica carinata HOM05D003732 ORTHO05D004965 8.4e-83 311.2 239 69.0
SHI43202 Sapria himalayana HOM05D003732 ORTHO05D004965 8.7e-80 301.2 227 66.1
CBR_g29478 Chara braunii HOM05D003732 ORTHO05D004965 4.1e-77 292.4 298 50.0
PGSC0003DMG402029257 Solanum tuberosum HOM05D003732 ORTHO05D004965 4.2e-66 255.8 185 64.9
PGSC0003DMG401029354 Solanum tuberosum HOM05D003732 ORTHO05D004965 2.1e-65 253.4 175 70.3
Cre01.g035350 Chlamydomonas reinhardtii HOM05D003732 ORTHO05D004965 5.2e-64 248.8 265 48.3
Eucgr.B02444 Eucalyptus grandis HOM05D003732 ORTHO05D004965 4.8e-54 215.7 142 73.9
AagrBONN_evm.TU.Sc2ySwM_344.1470 Anthoceros agrestis HOM05D003732 ORTHO05D004965 2.0e-52 210.3 177 56.5
Lalb_Chr24g0394381 Lupinus albus HOM05D003732 ORTHO05D004965 5.2e-48 195.7 122 75.4
Glyma.15G043900 Glycine max HOM05D003732 ORTHO05D004965 6.8e-48 195.3 115 80.9
ATR0594G185 Amborella trichopoda HOM05D003732 ORTHO05D004965 8.8e-48 194.9 127 71.7
Eucgr.B02443 Eucalyptus grandis HOM05D003732 ORTHO05D004965 1.2e-47 194.5 145 68.3
MSTRG.18619 Avicennia marina HOM05D003732 ORTHO05D004965 1.5e-47 194.1 107 83.2
Haze_26759 Corylus avellana HOM05D003732 ORTHO05D004965 1.1e-42 177.9 240 40.4
Cfa026351 Carpinus fangiana HOM05D003732 ORTHO05D004965 1.5e-42 177.6 317 37.2
Os12g0102100 Oryza sativa ssp. japonica HOM05D003732 ORTHO05D004965 2.9e-35 153.3 111 64.0
Cfa024534 Carpinus fangiana HOM05D003732 ORTHO05D004965 5.2e-32 142.5 303 29.4
MCO07G380 Micromonas commoda HOM05D003732 ORTHO05D004965 2.9e-30 136.7 284 32.7
SMO358G0103 Selaginella moellendorffii HOM05D003732 ORTHO05D004965 2.9e-30 136.7 244 35.2
SMO358G0684 Selaginella moellendorffii HOM05D003732 ORTHO05D004965 1.1e-29 134.8 244 32.0
Pp3c1_40480 Physcomitrium patens HOM05D003732 ORTHO05D004965 1.2e-28 131.3 251 32.3
PRCOL_00004177 Prasinoderma coloniale HOM05D003732 ORTHO05D004965 1.6e-28 131.0 298 33.2
SMO358G0184 Selaginella moellendorffii HOM05D003732 ORTHO05D004965 7.8e-28 128.6 244 35.2
SMO196G0264 Selaginella moellendorffii HOM05D003732 ORTHO05D004965 2.8e-25 120.2 299 30.1
MCO04G436 Micromonas commoda HOM05D003732 ORTHO05D004965 8.0e-25 118.6 284 31.0
Pp3c21_14810 Physcomitrium patens HOM05D003732 ORTHO05D004965 7.5e-23 112.1 285 30.9
Lalb_Chr24g0394361 Lupinus albus HOM05D003732 ORTHO05D004965 2.9e-22 110.2 59 86.4
SMO118G0022 Selaginella moellendorffii HOM05D003732 ORTHO05D004965 2.9e-22 110.2 249 30.1
SMO239G0017 Selaginella moellendorffii HOM05D003732 ORTHO05D004965 4.9e-22 109.4 226 33.2
PGSC0003DMG400029352 Solanum tuberosum HOM05D003732 ORTHO05D004965 3.2e-21 106.7 82 63.4
Medtr8g099510 Medicago truncatula HOM05D003732 ORTHO05D004965 3.9e-19 99.8 59 81.4
Cre11.g476550 Chlamydomonas reinhardtii HOM05D003732 ORTHO05D004965 3.3e-18 96.7 273 28.6
SMO340G0035 Selaginella moellendorffii HOM05D003732 ORTHO05D004965 3.3e-18 96.7 232 31.5
Mapoly0071s0075 Marchantia polymorpha HOM05D003732 ORTHO05D004965 5.6e-18 95.9 241 29.5
Mapoly0073s0049 Marchantia polymorpha HOM05D003732 ORTHO05D004965 7.3e-18 95.5 237 29.5
PGSC0003DMG402029354 Solanum tuberosum HOM05D003732 ORTHO05D004965 1.1e-16 91.7 108 46.3
Cre02.g116550 Chlamydomonas reinhardtii HOM05D003732 ORTHO05D004965 5.2e-16 89.4 308 25.3
AagrBONN_evm.TU.Sc2ySwM_228.5018 Anthoceros agrestis HOM05D003732 ORTHO05D014000 8.9e-16 88.6 106 41.5
Pp3c17_6460 Physcomitrium patens HOM05D003732 ORTHO05D014000 2.6e-15 87.0 123 37.4
Pp3c5_23300 Physcomitrium patens HOM05D003732 ORTHO05D004965 4.4e-15 86.3 278 27.3
SMO067G0006 Selaginella moellendorffii HOM05D003732 ORTHO05D030126 9.8e-15 85.1 227 28.2
Mapoly2449s0001 Marchantia polymorpha HOM05D003732 ORTHO05D004965 1.4e-13 81.3 205 29.8
AagrBONN_evm.TU.Sc2ySwM_117.955 Anthoceros agrestis HOM05D003732 ORTHO05D004965 7.1e-13 79.0 275 26.5
Nn3g16769 Nelumbo nucifera HOM05D003732 ORTHO05D014000 1.6e-12 77.8 140 35.0
Pp3c1_29590 Physcomitrium patens HOM05D003732 ORTHO05D004965 1.6e-12 77.8 126 33.3
Aqoxy3G01103 Aquilegia oxysepala HOM05D003732 ORTHO05D014000 5.1e-11 72.8 129 34.9
AagrBONN_evm.TU.Sc2ySwM_117.3460 Anthoceros agrestis HOM05D003732 ORTHO05D004965 6.6e-11 72.4 195 27.7
GSVIVG01007696001 Vitis vinifera HOM05D003732 ORTHO05D014000 6.6e-11 72.4 131 35.1
Haze_07546 Corylus avellana HOM05D003732 ORTHO05D014000 8.6e-11 72.0 140 32.1
Dinv24812 Davidia involucrata HOM05D003732 ORTHO05D014000 1.9e-10 70.9 140 32.9
Cfa019169 Carpinus fangiana HOM05D003732 ORTHO05D014000 2.5e-10 70.5 140 32.1
CDE07G2061 Ceratophyllum demersum HOM05D003732 ORTHO05D014000 5.6e-10 69.3 134 32.1
A06p03710 Brassica napus HOM05D004246 ORTHO05D005035 1.2e-09 68.2 217 27.6
Sp1g36530 Schrenkiella parvula HOM05D004246 ORTHO05D005035 2.1e-09 67.4 285 24.9
C06p04490 Brassica napus HOM05D004246 ORTHO05D005035 2.8e-09 67.0 285 24.6
Thhalv10011316m.g Eutrema salsugineum HOM05D004246 ORTHO05D005035 2.8e-09 67.0 285 24.9
Oeu006959.1 Olea europaea HOM05D004246 ORTHO05D005035 4.7e-09 66.2 289 24.6
BcaB04g17303 Brassica carinata HOM05D004246 ORTHO05D005035 6.2e-09 65.9 217 25.8
PGSC0003DMG401029257 Solanum tuberosum HOM05D003732 ORTHO05D004965 6.2e-09 65.9 135 37.8
A08p03640 Brassica napus HOM05D004246 ORTHO05D005035 1.1e-08 65.1 285 24.9
Duzib106G2079 Durio zibethinus HOM05D005791 ORTHO05D007452 1.1e-08 65.1 247 25.9
AL1G57080 Arabidopsis lyrata HOM05D004246 ORTHO05D005035 1.8e-08 64.3 285 24.2
Thecc.10G187200 Theobroma cacao HOM05D005791 ORTHO05D007452 1.8e-08 64.3 247 26.3
BcaC07g37017 Brassica carinata HOM05D004246 ORTHO05D005035 2.3e-08 63.9 217 25.8
C08p03840 Brassica napus HOM05D004246 ORTHO05D005035 2.3e-08 63.9 217 25.8
CARHR039720 Cardamine hirsuta HOM05D004246 ORTHO05D005035 3.1e-08 63.5 285 24.2
Phvul.011G215000 Phaseolus vulgaris HOM05D001548 ORTHO05D003901 5.2e-08 62.8 229 26.6
BcaB07g33648 Brassica carinata HOM05D004246 ORTHO05D005035 4.4e-07 59.7 281 24.6
BraA06t23576Z Brassica rapa HOM05D004246 ORTHO05D005035 2.2e-06 57.4 307 25.7
Cfa023475 Carpinus fangiana HOM05D000258 ORTHO05D000153 2.9e-06 57.0 294 21.8


User provided reference genes

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