Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 2.2e-182 642.1 315 100.0
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 1.1e-120 437.2 419 59.4
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 2.7e-119 432.6 420 59.3
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 1.1e-96 357.5 418 51.0
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 1.3e-89 334.0 417 47.7
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 6.4e-89 331.6 408 48.5
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 5.4e-88 328.6 416 46.9
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 6.0e-87 325.1 418 46.7
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 2.5e-85 319.7 413 47.2
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 4.3e-85 318.9 416 46.4
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 5.6e-85 318.5 400 48.8
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 5.6e-85 318.5 411 45.7
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 7.3e-85 318.2 417 45.6
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 1.6e-84 317.0 425 44.9
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 6.2e-84 315.1 417 45.1
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.1e-83 314.3 411 46.7
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 1.4e-83 313.9 409 46.9
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.4e-83 313.9 408 46.1
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.8e-83 313.5 409 46.9
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 4.0e-83 312.4 406 46.1
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 1.2e-82 310.8 414 44.9
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 2.0e-82 310.1 412 47.6
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 2.6e-82 309.7 449 44.8
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.4e-82 309.3 409 46.7
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 3.4e-82 309.3 409 45.2
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.8e-82 308.5 409 46.0
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.8e-82 308.5 409 46.0
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 7.6e-82 308.1 415 44.8
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.3e-81 307.4 409 46.5
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 1.7e-81 307.0 405 45.9
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 2.9e-81 306.2 411 46.5
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.9e-81 306.2 410 46.8
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 4.9e-81 305.4 413 45.0
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 2.4e-80 303.1 409 44.7
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 3.2e-80 302.8 403 45.7
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 3.2e-80 302.8 415 45.3
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 4.1e-80 302.4 415 44.3
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 4.1e-80 302.4 415 44.8
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 9.2e-80 301.2 408 44.9
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 1.2e-79 300.8 411 45.0
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 1.2e-79 300.8 404 44.8
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 2.1e-79 300.1 409 45.0
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 7.8e-79 298.1 413 44.1
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 2.3e-78 296.6 410 44.4
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 1.1e-77 294.3 413 44.1
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 1.1e-77 294.3 409 43.8
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 1.5e-77 293.9 401 46.4
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 1.5e-77 293.9 422 42.7
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 2.5e-77 293.1 409 44.5
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 2.5e-77 293.1 401 45.1
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 4.3e-77 292.4 424 42.9
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 5.6e-77 292.0 408 45.1
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 5.6e-77 292.0 409 44.0
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 7.3e-77 291.6 425 42.4
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 1.2e-76 290.8 408 44.6
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 1.6e-76 290.4 412 43.2
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 2.8e-76 289.7 398 45.7
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 8.1e-76 288.1 408 44.4
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 1.1e-75 287.7 408 44.6
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 1.4e-75 287.3 396 46.0
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 1.2e-74 284.3 408 43.9
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 9.9e-74 281.2 417 42.0
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 1.7e-73 280.4 411 43.1
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 2.2e-73 280.0 399 44.4
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 3.8e-73 279.3 443 42.4
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 4.9e-73 278.9 406 42.6
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 4.2e-72 275.8 409 43.3
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 5.4e-72 275.4 413 42.6
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 7.1e-72 275.0 411 42.3
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 7.1e-72 275.0 398 42.5
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 3.5e-71 272.7 471 40.6
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 7.8e-71 271.6 402 43.3
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 2.3e-70 270.0 416 41.6
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.0e-70 269.6 416 41.3
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 3.9e-70 269.2 398 43.7
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.1e-69 267.7 424 41.7
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.5e-69 267.3 416 41.1
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.9e-69 266.9 419 42.0
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 4.3e-69 265.8 405 42.7
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 5.6e-69 265.4 406 42.1
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 7.3e-69 265.0 413 41.4
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 8.1e-68 261.5 406 41.9
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.4e-67 260.8 414 41.1
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 1.4e-67 260.8 269 52.4
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.5e-66 257.3 392 42.6
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 1.5e-66 257.3 410 40.5
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 2.9e-65 253.1 399 38.6
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 8.4e-65 251.5 418 40.7
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.1e-64 251.1 406 41.1
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 7.1e-64 248.4 404 41.1
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 1.2e-63 247.7 390 43.1
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 2.7e-63 246.5 405 39.3
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 2.7e-63 246.5 400 42.2
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 2.7e-63 246.5 381 40.2
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 3.5e-63 246.1 405 41.5
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 4.6e-63 245.7 396 42.7
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 4.3e-61 239.2 347 44.4
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 1.3e-60 237.7 414 40.6
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 8.1e-60 235.0 225 54.2
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.1e-59 234.6 364 43.1
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 1.4e-59 234.2 414 40.6
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 9.0e-59 231.5 418 38.5
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 2.0e-58 230.3 424 36.1
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 4.5e-58 229.2 381 40.7
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 7.6e-58 228.4 424 35.8
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 3.2e-56 223.0 398 37.9
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 3.9e-54 216.1 103 98.1
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 3.7e-52 209.5 201 56.7
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 4.8e-52 209.1 464 33.6
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 9.0e-51 204.9 225 50.7
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.0e-50 203.8 260 46.5
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 3.5e-47 193.0 326 40.8
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 2.8e-44 183.3 191 48.2
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 2.0e-42 177.2 291 39.5
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 7.6e-42 175.3 191 48.2
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 1.1e-40 171.4 411 31.6
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 1.9e-40 170.6 133 71.4
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 1.2e-39 167.9 159 50.3
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 1.2e-39 167.9 416 32.0
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.0e-38 164.9 363 33.9
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 2.3e-38 163.7 437 31.4
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 5.7e-37 159.1 191 44.0
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 2.8e-36 156.8 402 32.6
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 4.8e-36 156.0 228 40.4
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 6.3e-36 155.6 290 38.6
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 5.9e-34 149.1 184 44.0
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 7.9e-31 138.7 232 40.1
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 2.3e-30 137.1 335 35.2
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 5.1e-30 136.0 99 68.7
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 5.3e-19 99.4 311 28.6
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 9.1e-19 98.6 160 43.8
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 1.1e-16 91.7 172 33.7
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 1.6e-15 87.8 87 54.0
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 3.6e-15 86.7 174 35.1
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 6.7e-14 82.4 143 39.2
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.0e-13 80.9 49 79.6
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 3.3e-13 80.1 56 71.4
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 3.3e-13 80.1 56 71.4
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 5.7e-13 79.3 74 58.1
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 1.7e-12 77.8 90 45.6
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 8.5e-09 65.5 133 36.8
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 4.0e-06 56.6 314 25.2


User provided reference genes

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