Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3663 Acer truncatum HOM05D007207 ORTHO05D009041 1.1e-88 330.5 249 100.0
Ciclev10030232m.g Citrus clementina HOM05D007207 ORTHO05D009041 5.5e-27 125.6 131 54.2
MD03G1114400 Malus domestica HOM05D007207 ORTHO05D009041 3.9e-25 119.4 131 48.9
Thecc.09G257600 Theobroma cacao HOM05D007207 ORTHO05D009041 2.0e-24 117.1 131 51.9
Duzib168G2405 Durio zibethinus HOM05D007207 ORTHO05D009041 5.7e-24 115.5 131 50.4
CiPaw.13G111000 Carya illinoinensis HOM05D007207 ORTHO05D009041 2.8e-23 113.2 131 51.1
CANSAT54G0517 Cannabis sativa HOM05D007207 ORTHO05D009041 3.7e-23 112.8 129 50.4
Sed0024734 Sechium edule HOM05D007207 ORTHO05D009041 6.3e-23 112.1 136 46.3
TWI79G0777 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 1.1e-22 111.3 135 48.1
Duzib170G0585 Durio zibethinus HOM05D007207 ORTHO05D009041 3.1e-22 109.8 131 48.9
Manes.04G022800 Manihot esculenta HOM05D007207 ORTHO05D009041 5.3e-22 109.0 129 47.3
RcHm_v2.0_Chr5g0059711 Rosa chinensis HOM05D007207 ORTHO05D009041 5.3e-22 109.0 128 48.4
PSO339G6489 Papaver somniferum HOM05D007207 ORTHO05D009041 7.0e-22 108.6 126 48.4
QL01p022653 Quercus lobata HOM05D007207 ORTHO05D009041 7.0e-22 108.6 129 49.6
Gohir.A07G117400 Gossypium hirsutum HOM05D007207 ORTHO05D009041 2.0e-21 107.1 131 45.8
PSO063G2032 Papaver somniferum HOM05D007207 ORTHO05D009041 2.0e-21 107.1 126 47.6
Potri.009G012300 Populus trichocarpa HOM05D007207 ORTHO05D009041 2.0e-21 107.1 130 47.7
QL01p022696 Quercus lobata HOM05D007207 ORTHO05D009041 4.5e-21 105.9 129 48.8
FvH4_3g32640 Fragaria vesca HOM05D007207 ORTHO05D009041 5.9e-21 105.5 124 48.4
FAN11G2184 Fragaria x ananassa HOM05D007207 ORTHO05D009041 5.9e-21 105.5 124 48.4
Gorai.001G131300 Gossypium raimondii HOM05D007207 ORTHO05D009041 1.3e-20 104.4 131 45.0
FAN25G0070 Fragaria x ananassa HOM05D007207 ORTHO05D009041 2.2e-20 103.6 122 47.5
Gohir.D07G121800 Gossypium hirsutum HOM05D007207 ORTHO05D009041 2.9e-20 103.2 131 44.3
FAN21G0351 Fragaria x ananassa HOM05D007207 ORTHO05D009041 5.0e-20 102.4 124 46.8
TWI75G1762 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 5.0e-20 102.4 134 44.8
Nn2g13070 Nelumbo nucifera HOM05D007207 ORTHO05D009041 8.5e-20 101.7 126 46.8
Sc06g0010040 Simmondsia chinensis HOM05D007207 ORTHO05D009041 1.9e-19 100.5 131 43.5
Actinidia20448 Actinidia chinensis HOM05D007207 ORTHO05D009041 5.5e-19 99.0 123 47.2
TAR633G1504 Trochodendron aralioides HOM05D000656 ORTHO05D000871 5.5e-19 99.0 121 46.3
Dinv32761 Davidia involucrata HOM05D007207 ORTHO05D009041 1.6e-18 97.4 119 47.1
THA.LOC104815749 Tarenaya hassleriana HOM05D007207 ORTHO05D009041 1.6e-18 97.4 131 42.7
EL10Ac9g22498 Beta vulgaris HOM05D007207 ORTHO05D009041 2.1e-18 97.1 126 46.0
Ah.01g015070 Amaranthus hybridus HOM05D007207 ORTHO05D009041 8.0e-18 95.1 126 44.4
Hma1.2p1_1030F.1_g249850 Hydrangea macrophylla HOM05D007207 ORTHO05D009041 1.0e-17 94.7 123 44.7
VMungo1127G1112 Vigna mungo HOM05D007207 ORTHO05D009041 1.0e-17 94.7 122 44.3
AUR62039621 Chenopodium quinoa HOM05D007207 ORTHO05D009041 2.3e-17 93.6 131 46.6
Lalb_Chr01g0004241 Lupinus albus HOM05D007207 ORTHO05D009041 2.3e-17 93.6 122 43.4
arahy.Tifrunner.gnm1.ann1.F7CTDZ Arachis hypogaea HOM05D007207 ORTHO05D009041 3.0e-17 93.2 116 44.8
arahy.Tifrunner.gnm1.ann1.KZS5BJ Arachis hypogaea HOM05D007207 ORTHO05D009041 3.0e-17 93.2 116 44.8
BcaB02g06697 Brassica carinata HOM05D007207 ORTHO05D009041 5.2e-17 92.4 122 44.3
Lj3g0024872 Lotus japonicus HOM05D007207 ORTHO05D009041 6.7e-17 92.0 118 43.2
AT1G07980 Arabidopsis thaliana HOM05D007207 ORTHO05D009041 8.8e-17 91.7 119 44.5
Phvul.011G077500 Phaseolus vulgaris HOM05D007207 ORTHO05D009041 8.8e-17 91.7 118 43.2
Hund08142 Selenicereus undatus HOM05D007207 ORTHO05D009041 8.8e-17 91.7 125 41.6
Psat7g224520 Pisum sativum HOM05D007207 ORTHO05D009041 1.1e-16 91.3 119 42.9
Ca_05249_v3 Cicer arietinum L. HOM05D007207 ORTHO05D009041 1.5e-16 90.9 119 44.5
Glyma.12G069100 Glycine max HOM05D007207 ORTHO05D009041 1.5e-16 90.9 124 41.9
Peaxi162Scf00686g00043 Petunia axillaris HOM05D007207 ORTHO05D009041 1.5e-16 90.9 125 41.6
Thhalv10008787m.g Eutrema salsugineum HOM05D007207 ORTHO05D009041 2.0e-16 90.5 122 42.6
BcaC07g42510 Brassica carinata HOM05D007207 ORTHO05D009041 2.6e-16 90.1 122 43.4
A06p05070 Brassica napus HOM05D007207 ORTHO05D009041 2.6e-16 90.1 122 42.6
BraA06t23713Z Brassica rapa HOM05D007207 ORTHO05D009041 2.6e-16 90.1 122 42.6
Medtr4g059710 Medicago truncatula HOM05D007207 ORTHO05D009041 2.6e-16 90.1 119 42.9
Carub.0001s0733 Capsella rubella HOM05D007207 ORTHO05D009041 3.3e-16 89.7 122 42.6
CARHR007760 Cardamine hirsuta HOM05D007207 ORTHO05D009041 4.4e-16 89.4 131 40.5
PGR102G0648 Punica granatum HOM05D007207 ORTHO05D009041 4.4e-16 89.4 123 43.9
ECA248G1375 Erigeron canadensis HOM05D000214 ORTHO05D000131 5.7e-16 89.0 120 44.2
BcaC05g24714 Brassica carinata HOM05D007207 ORTHO05D009041 7.4e-16 88.6 123 43.9
C05p06030 Brassica napus HOM05D007207 ORTHO05D009041 7.4e-16 88.6 123 43.9
BolC5t29362H Brassica oleracea HOM05D007207 ORTHO05D009041 7.4e-16 88.6 123 43.9
Cc01_g11290 Coffea canephora HOM05D007207 ORTHO05D009041 7.4e-16 88.6 120 39.2
Prupe.6G099600 Prunus persica HOM05D007207 ORTHO05D009041 7.4e-16 88.6 63 66.7
MSTRG.17815 Avicennia marina HOM05D007207 ORTHO05D009041 9.7e-16 88.2 125 41.6
A09p66080 Brassica napus HOM05D007207 ORTHO05D009041 1.3e-15 87.8 131 40.5
BraA09t41946Z Brassica rapa HOM05D007207 ORTHO05D009041 1.3e-15 87.8 131 40.5
Lsat_1_v5_gn_1_65500 Lactuca sativa HOM05D007207 ORTHO05D009041 1.7e-15 87.4 124 40.3
GSVIVG01025169001 Vitis vinifera HOM05D007207 ORTHO05D009041 1.7e-15 87.4 118 43.2
HPP92_012669 Vanilla planifolia HOM05D007207 ORTHO05D009041 2.2e-15 87.0 131 37.4
Actinidia03739 Actinidia chinensis HOM05D007207 ORTHO05D009041 2.8e-15 86.7 73 61.6
Aa31LG2G9300 Aethionema arabicum HOM05D007207 ORTHO05D009041 2.8e-15 86.7 124 39.5
AL1G18310 Arabidopsis lyrata HOM05D007207 ORTHO05D009041 2.8e-15 86.7 122 41.8
Sp1g06610 Schrenkiella parvula HOM05D007207 ORTHO05D009041 3.7e-15 86.3 131 38.9
C08p50230 Brassica napus HOM05D007207 ORTHO05D009041 4.8e-15 85.9 80 52.5
BolC8t52552H Brassica oleracea HOM05D007207 ORTHO05D009041 4.8e-15 85.9 80 52.5
HanXRQChr01g0018341 Helianthus annuus HOM05D007207 ORTHO05D009041 6.3e-15 85.5 124 38.7
TPR.G17530 Trifolium pratense HOM05D007207 ORTHO05D009041 6.3e-15 85.5 121 42.1
Sopen06g007140 Solanum pennellii HOM05D007207 ORTHO05D009041 8.2e-15 85.1 119 40.3
MBI11_g23474_MAGBIO Magnolia biondii HOM05D007207 ORTHO05D009041 1.1e-14 84.7 124 41.9
Solyc06g016750.3 Solanum lycopersicum HOM05D007207 ORTHO05D009041 1.1e-14 84.7 119 40.3
MELO3C025765.2 Cucumis melo HOM05D007207 ORTHO05D009041 1.8e-14 84.0 148 37.2
Rhsim01G0217900 Rhododendron simsii HOM05D007207 ORTHO05D009041 2.4e-14 83.6 135 40.0
CAN.G934.2 Capsicum annuum HOM05D007207 ORTHO05D009041 5.3e-14 82.4 125 38.4
TAR636G0495 Trochodendron aralioides HOM05D007207 ORTHO05D009041 2.6e-13 80.1 121 43.0
Duzib170G0223 Durio zibethinus HOM05D007207 ORTHO05D009041 7.7e-13 78.6 63 61.9
SalBow3G2981 Salvia bowleyana HOM05D007207 ORTHO05D009041 7.7e-13 78.6 124 35.5
ClCG02G021080 Citrullus lanatus HOM05D007207 ORTHO05D009041 5.0e-12 75.9 67 52.2
CsaV3_6G021790 Cucumis sativus L. HOM05D007207 ORTHO05D009041 1.9e-11 73.9 64 54.7
Os03g0852300 Oryza sativa ssp. japonica HOM05D007207 ORTHO05D009041 1.9e-11 73.9 116 36.2
Sabra09G0008800 Salix brachista HOM05D007207 ORTHO05D009041 2.5e-11 73.6 162 35.2
SHI06088 Sapria himalayana HOM05D007207 ORTHO05D009041 4.2e-11 72.8 102 41.2
SGA_v2.0_scaffold80G25756 Striga asiatica HOM05D007207 ORTHO05D009041 9.4e-11 71.6 133 35.3
Atru.chr3.3649 Acer truncatum HOM05D007207 ORTHO05D009041 2.1e-10 70.5 85 78.8
CDE06G2547 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 4.7e-10 69.3 123 36.6
CDE07G0349 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 6.1e-10 68.9 123 36.6
SEGI_13018 Sequoiadendron giganteum HOM05D007207 ORTHO05D009041 8.0e-10 68.6 123 35.8
Oeu027462.1 Olea europaea HOM05D007207 ORTHO05D009041 2.3e-09 67.0 65 49.2
unitig_699.g19196 Utricularia gibba HOM05D007207 ORTHO05D009041 8.8e-09 65.1 122 36.1
Aa31LG8G12190 Aethionema arabicum HOM05D007207 ORTHO05D009041 1.5e-08 64.3 63 47.6
AagrBONN_evm.TU.Sc2ySwM_228.2356 Anthoceros agrestis HOM05D007207 ORTHO05D009041 1.5e-08 64.3 76 38.2
vmacro14446 Vaccinium macrocarpon HOM05D007207 ORTHO05D009041 1.5e-08 64.3 115 36.5
Glyma.11G148000 Glycine max HOM05D007207 ORTHO05D009041 4.4e-08 62.8 72 41.7
CBR_g30333 Chara braunii HOM05D000789 ORTHO05D000897 9.7e-08 61.6 75 41.3
PGSC0003DMG401030137 Solanum tuberosum HOM05D038777 ORTHO05D009041 9.7e-08 61.6 60 48.3
Migut.N02608 Erythranthe guttata HOM05D007207 ORTHO05D009041 4.8e-07 59.3 59 47.5
Pp3c17_12030 Physcomitrium patens HOM05D007207 ORTHO05D009041 1.8e-06 57.4 124 32.3
AUR62024995 Chenopodium quinoa HOM05D007207 ORTHO05D009041 3.1e-06 56.6 96 40.6
Mapoly0168s0007 Marchantia polymorpha HOM05D007207 ORTHO05D009041 9.1e-06 55.1 92 34.8


User provided reference genes

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