Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3644 Acer truncatum HOM05D000699 ORTHO05D000519 4.8e-55 218.4 193 100.0
Ciclev10029794m.g Citrus clementina HOM05D000699 ORTHO05D000519 8.0e-26 121.3 67 80.6
MD11G1133500 Malus domestica HOM05D000699 ORTHO05D000519 3.9e-20 102.4 65 70.8
FvH4_3g32620 Fragaria vesca HOM05D000699 ORTHO05D000519 8.6e-20 101.3 67 68.7
FAN21G3226 Fragaria x ananassa HOM05D000699 ORTHO05D000519 8.6e-20 101.3 67 68.7
MD03G1114100 Malus domestica HOM05D000699 ORTHO05D000519 8.6e-20 101.3 63 71.4
Cpa.g.sc216.20 Carica papaya HOM05D000699 ORTHO05D000519 1.1e-19 100.9 67 70.1
Ca_05251_v3 Cicer arietinum L. HOM05D000699 ORTHO05D000519 1.9e-19 100.1 65 70.8
RcHm_v2.0_Chr5g0059691 Rosa chinensis HOM05D000699 ORTHO05D000519 1.9e-19 100.1 62 74.2
CANSAT54G1974 Cannabis sativa HOM05D000699 ORTHO05D000519 7.3e-19 98.2 64 68.8
CiPaw.13G111400 Carya illinoinensis HOM05D000699 ORTHO05D000519 7.3e-19 98.2 67 67.2
CiPaw.13G111800 Carya illinoinensis HOM05D000699 ORTHO05D000519 7.3e-19 98.2 67 67.2
FAN11G2162 Fragaria x ananassa HOM05D000699 ORTHO05D000519 7.3e-19 98.2 67 67.2
Medtr4g059670 Medicago truncatula HOM05D000699 ORTHO05D000519 9.5e-19 97.8 66 63.6
Prupe.6G099800 Prunus persica HOM05D000699 ORTHO05D000519 2.1e-18 96.7 67 65.7
arahy.Tifrunner.gnm1.ann1.PVM0SU Arachis hypogaea HOM05D000699 ORTHO05D000519 3.6e-18 95.9 65 67.7
Glyma.11G147600 Glycine max HOM05D000699 ORTHO05D000519 3.6e-18 95.9 68 64.7
Glyma.11G147700 Glycine max HOM05D000699 ORTHO05D000519 3.6e-18 95.9 68 64.7
GSVIVG01025171001 Vitis vinifera HOM05D000699 ORTHO05D000519 4.7e-18 95.5 64 67.2
Atru.chr3.3645 Acer truncatum HOM05D000699 ORTHO05D000519 6.2e-18 95.1 67 65.7
Medtr4g059630 Medicago truncatula HOM05D000699 ORTHO05D000519 6.2e-18 95.1 65 66.2
arahy.Tifrunner.gnm1.ann1.LP3XDL Arachis hypogaea HOM05D000699 ORTHO05D000519 8.1e-18 94.7 65 66.2
Hma1.2p1_1030F.1_g249830 Hydrangea macrophylla HOM05D000699 ORTHO05D000519 1.4e-17 94.0 68 64.7
SalBow3G3746 Salvia bowleyana HOM05D000699 ORTHO05D000519 1.4e-17 94.0 68 67.6
RcHm_v2.0_Chr5g0059671 Rosa chinensis HOM05D000699 ORTHO05D000519 1.8e-17 93.6 65 66.2
Ciclev10028722m.g Citrus clementina HOM05D000699 ORTHO05D000519 3.1e-17 92.8 67 61.2
Prupe.6G099900 Prunus persica HOM05D000699 ORTHO05D000519 5.2e-17 92.0 65 66.2
TPR.G15536 Trifolium pratense HOM05D000699 ORTHO05D000519 5.2e-17 92.0 65 64.6
FvH4_3g32610 Fragaria vesca HOM05D000699 ORTHO05D000519 6.8e-17 91.7 65 64.6
FAN11G3954 Fragaria x ananassa HOM05D000699 ORTHO05D000519 6.8e-17 91.7 65 64.6
FAN21G0070 Fragaria x ananassa HOM05D000699 ORTHO05D000519 6.8e-17 91.7 65 64.6
Glyma.12G068700 Glycine max HOM05D000699 ORTHO05D000519 6.8e-17 91.7 68 61.8
RcHm_v2.0_Chr5g0059651 Rosa chinensis HOM05D000699 ORTHO05D000519 6.8e-17 91.7 67 62.7
Migut.D02209 Erythranthe guttata HOM05D000699 ORTHO05D000519 1.2e-16 90.9 68 64.7
Migut.D02213 Erythranthe guttata HOM05D000699 ORTHO05D000519 1.2e-16 90.9 68 64.7
VMungo1127G1940 Vigna mungo HOM05D000699 ORTHO05D000519 1.2e-16 90.9 68 60.3
Oeu059096.1 Olea europaea HOM05D000699 ORTHO05D000519 2.0e-16 90.1 68 63.2
AL8G37120 Arabidopsis lyrata HOM05D000699 ORTHO05D000519 3.4e-16 89.4 65 63.1
AT5G60530 Arabidopsis thaliana HOM05D000699 ORTHO05D000519 3.4e-16 89.4 65 63.1
Lj3g0002054 Lotus japonicus HOM05D000699 ORTHO05D000519 4.4e-16 89.0 65 64.6
Lj3g0004563 Lotus japonicus HOM05D000699 ORTHO05D000519 4.4e-16 89.0 65 64.6
Lsat_1_v5_gn_6_46961 Lactuca sativa HOM05D000699 ORTHO05D000519 5.8e-16 88.6 68 63.2
Psat7g224320 Pisum sativum HOM05D000699 ORTHO05D000519 5.8e-16 88.6 69 62.3
Sc06g0010060 Simmondsia chinensis HOM05D000699 ORTHO05D000519 5.8e-16 88.6 67 62.7
ECA233G2206 Erigeron canadensis HOM05D000699 ORTHO05D000519 7.5e-16 88.2 68 63.2
Prupe.6G100000 Prunus persica HOM05D000699 ORTHO05D000519 7.5e-16 88.2 67 62.7
Manes.11G144100 Manihot esculenta HOM05D000699 ORTHO05D000519 9.8e-16 87.8 62 64.5
Phvul.011G077800 Phaseolus vulgaris HOM05D000699 ORTHO05D000519 9.8e-16 87.8 68 58.8
Carub.0008s2122 Capsella rubella HOM05D000699 ORTHO05D000519 1.3e-15 87.4 65 60.0
Lsat_1_v5_gn_6_46921 Lactuca sativa HOM05D000699 ORTHO05D000519 1.3e-15 87.4 68 63.2
Thecc.09G257200 Theobroma cacao HOM05D000699 ORTHO05D000519 1.3e-15 87.4 62 67.7
CANSAT54G0230 Cannabis sativa HOM05D000699 ORTHO05D000519 1.7e-15 87.0 64 60.9
Duzib168G1697 Durio zibethinus HOM05D000699 ORTHO05D000519 1.7e-15 87.0 67 56.7
Aa31LG1G12520 Aethionema arabicum HOM05D000699 ORTHO05D000519 2.2e-15 86.7 70 55.7
FvH4_3g32600 Fragaria vesca HOM05D000699 ORTHO05D000519 2.2e-15 86.7 67 59.7
FAN11G0036 Fragaria x ananassa HOM05D000699 ORTHO05D000519 2.2e-15 86.7 67 59.7
FAN21G2122 Fragaria x ananassa HOM05D000699 ORTHO05D000519 2.2e-15 86.7 67 59.7
Manes.04G022400 Manihot esculenta HOM05D000699 ORTHO05D000519 2.2e-15 86.7 62 62.9
Thecc.09G257300 Theobroma cacao HOM05D000699 ORTHO05D000519 2.2e-15 86.7 67 59.7
A03p11100 Brassica napus HOM05D000699 ORTHO05D000519 2.9e-15 86.3 65 60.0
A10p17710 Brassica napus HOM05D000699 ORTHO05D000519 2.9e-15 86.3 65 60.0
BraA03t10424Z Brassica rapa HOM05D000699 ORTHO05D000519 2.9e-15 86.3 65 60.0
BraA10t43850Z Brassica rapa HOM05D000699 ORTHO05D000519 2.9e-15 86.3 65 60.0
CARHR274190 Cardamine hirsuta HOM05D000699 ORTHO05D000519 2.9e-15 86.3 65 61.5
Sp6g22090 Schrenkiella parvula HOM05D000699 ORTHO05D000519 2.9e-15 86.3 67 64.2
BcaB08g36347 Brassica carinata HOM05D000699 ORTHO05D000519 3.7e-15 85.9 61 62.3
Thhalv10013538m.g Eutrema salsugineum HOM05D000699 ORTHO05D000519 3.7e-15 85.9 65 60.0
QL01p022448 Quercus lobata HOM05D000699 ORTHO05D000519 3.7e-15 85.9 67 59.7
Eucgr.B02488 Eucalyptus grandis HOM05D000699 ORTHO05D000519 4.9e-15 85.5 68 58.8
Lsat_1_v5_gn_6_46240 Lactuca sativa HOM05D000699 ORTHO05D000519 4.9e-15 85.5 64 62.5
FAN16G0782 Fragaria x ananassa HOM05D000699 ORTHO05D000519 6.4e-15 85.1 67 58.2
THA.LOC104810849 Tarenaya hassleriana HOM05D000699 ORTHO05D000519 8.3e-15 84.7 67 58.2
BcaC03g13962 Brassica carinata HOM05D000699 ORTHO05D000519 1.1e-14 84.3 66 56.1
C03p12790 Brassica napus HOM05D000699 ORTHO05D000519 1.1e-14 84.3 61 62.3
BolC3t13745H Brassica oleracea HOM05D000699 ORTHO05D000519 1.1e-14 84.3 65 58.5
FAN21G1309 Fragaria x ananassa HOM05D000699 ORTHO05D000519 1.1e-14 84.3 67 59.7
Thhalv10015587m.g Eutrema salsugineum HOM05D000699 ORTHO05D000519 1.4e-14 84.0 67 61.2
BcaB08g36346 Brassica carinata HOM05D000699 ORTHO05D000519 1.9e-14 83.6 64 60.9
BcaC04g19710 Brassica carinata HOM05D000699 ORTHO05D000519 1.9e-14 83.6 65 56.9
C09p53170 Brassica napus HOM05D000699 ORTHO05D000519 1.9e-14 83.6 65 56.9
BolC9t58192H Brassica oleracea HOM05D000699 ORTHO05D000519 1.9e-14 83.6 65 56.9
Cpa.g.sc216.19 Carica papaya HOM05D000699 ORTHO05D000519 1.9e-14 83.6 69 58.0
Gohir.A07G117750 Gossypium hirsutum HOM05D000699 ORTHO05D000519 1.9e-14 83.6 67 58.2
Gohir.D07G122000 Gossypium hirsutum HOM05D000699 ORTHO05D000519 1.9e-14 83.6 67 58.2
Gorai.001G131700 Gossypium raimondii HOM05D000699 ORTHO05D000519 1.9e-14 83.6 67 58.2
Dinv12495 Davidia involucrata HOM05D000699 ORTHO05D000519 3.2e-14 82.8 64 60.9
QL01p022460 Quercus lobata HOM05D000699 ORTHO05D000519 3.2e-14 82.8 63 61.9
Sabra09G0008600 Salix brachista HOM05D000699 ORTHO05D000519 3.2e-14 82.8 67 58.2
AT5G60520 Arabidopsis thaliana HOM05D000699 ORTHO05D000519 4.1e-14 82.4 67 59.7
Gohir.A09G107000 Gossypium hirsutum HOM05D000699 ORTHO05D000519 4.1e-14 82.4 65 61.5
AL8G37110 Arabidopsis lyrata HOM05D000699 ORTHO05D000519 5.4e-14 82.0 67 61.2
Gohir.D09G103800 Gossypium hirsutum HOM05D000699 ORTHO05D000519 5.4e-14 82.0 62 64.5
Gorai.006G119700 Gossypium raimondii HOM05D000699 ORTHO05D000519 5.4e-14 82.0 62 64.5
A10p17700 Brassica napus HOM05D000699 ORTHO05D000519 9.2e-14 81.3 67 58.2
ECA233G2664 Erigeron canadensis HOM05D000699 ORTHO05D000519 9.2e-14 81.3 67 53.7
Sp6g22100 Schrenkiella parvula HOM05D000699 ORTHO05D000519 9.2e-14 81.3 65 56.9
Potri.009G012500 Populus trichocarpa HOM05D000699 ORTHO05D000519 1.2e-13 80.9 67 56.7
BraA10t43849Z Brassica rapa HOM05D000699 ORTHO05D000519 1.6e-13 80.5 67 58.2
Carub.0008s2121 Capsella rubella HOM05D000699 ORTHO05D000519 1.6e-13 80.5 67 58.2
CARHR274180 Cardamine hirsuta HOM05D000699 ORTHO05D000519 1.6e-13 80.5 67 58.2
BcaC04g19709 Brassica carinata HOM05D000699 ORTHO05D000519 2.1e-13 80.1 67 58.2
C09p53160 Brassica napus HOM05D000699 ORTHO05D000519 2.1e-13 80.1 67 58.2
BolC9t58191H Brassica oleracea HOM05D000699 ORTHO05D000519 2.1e-13 80.1 67 58.2
Gohir.D09G103700 Gossypium hirsutum HOM05D000699 ORTHO05D000519 4.6e-13 79.0 67 55.2
Gorai.006G119800 Gossypium raimondii HOM05D000699 ORTHO05D000519 4.6e-13 79.0 67 55.2
MD03G1114200 Malus domestica HOM05D000699 ORTHO05D000519 4.6e-13 79.0 67 56.7
HanXRQChr02g0055701 Helianthus annuus HOM05D000699 ORTHO05D000519 1.0e-12 77.8 68 52.9
Gohir.A09G106900 Gossypium hirsutum HOM05D000699 ORTHO05D000519 1.7e-12 77.0 67 53.7
Manes.11G144000 Manihot esculenta HOM05D000699 ORTHO05D000519 3.9e-12 75.9 67 53.7
THA.LOC104814833 Tarenaya hassleriana HOM05D000699 ORTHO05D000519 5.1e-12 75.5 56 55.4
BcaB01g04661 Brassica carinata HOM05D000699 ORTHO05D000519 6.6e-12 75.1 53 60.4
Lj1A190G88 Lonicera japonica HOM05D000699 ORTHO05D000519 8.6e-12 74.7 62 51.6
ATR0115G011 Amborella trichopoda HOM05D000699 ORTHO05D000519 2.5e-11 73.2 61 52.5
SalBow3G4213 Salvia bowleyana HOM05D000699 ORTHO05D000519 2.5e-11 73.2 51 66.7
CAN.G631.15 Capsicum annuum HOM05D000699 ORTHO05D000519 4.3e-11 72.4 62 56.5
Nn2g10755 Nelumbo nucifera HOM05D000699 ORTHO05D000519 4.3e-11 72.4 68 52.9
vmacro03188 Vaccinium macrocarpon HOM05D000699 ORTHO05D000519 5.6e-11 72.0 65 56.9
DCAR_015543 Daucus carota HOM05D000699 ORTHO05D000519 7.3e-11 71.6 65 56.9
SEGI_33257 Sequoiadendron giganteum HOM05D000699 ORTHO05D000519 1.6e-10 70.5 62 48.4
SEGI_39200 Sequoiadendron giganteum HOM05D000699 ORTHO05D000519 1.6e-10 70.5 62 48.4
Nn2g13072 Nelumbo nucifera HOM05D000699 ORTHO05D000519 2.8e-10 69.7 68 51.5
MBI07_g41456_MAGBIO Magnolia biondii HOM05D000699 ORTHO05D000519 4.7e-10 68.9 61 52.5
SEGI_05519 Sequoiadendron giganteum HOM05D000699 ORTHO05D000519 4.7e-10 68.9 62 50.0
HPP92_012806 Vanilla planifolia HOM05D000699 ORTHO05D000519 4.7e-10 68.9 68 50.0
Aqoxy4G03262 Aquilegia oxysepala HOM05D000699 ORTHO05D000519 6.2e-10 68.6 68 50.0
MBI10_g04866_MAGBIO Magnolia biondii HOM05D000699 ORTHO05D000519 1.1e-09 67.8 68 50.0
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 2.3e-09 66.6 54 59.3
Aqoxy4G03254 Aquilegia oxysepala HOM05D000699 ORTHO05D000519 4.0e-09 65.9 53 58.5
Cfa011333 Carpinus fangiana HOM05D000699 ORTHO05D000519 4.0e-09 65.9 65 49.2
DCAR_015542 Daucus carota HOM05D000699 ORTHO05D000519 4.0e-09 65.9 49 59.2
PSO339G1578 Papaver somniferum HOM05D000699 ORTHO05D000519 2.0e-08 63.5 38 65.8
PSO801G0327 Papaver somniferum HOM05D000699 ORTHO05D000519 2.0e-08 63.5 38 65.8
Potri.009G012600 Populus trichocarpa HOM05D000699 ORTHO05D000519 2.6e-08 63.2 62 50.0
SEGI_25084 Sequoiadendron giganteum HOM05D000699 ORTHO05D000519 2.6e-08 63.2 64 51.6
DCAR_015544 Daucus carota HOM05D000699 ORTHO05D000519 9.9e-08 61.2 68 50.0
Aqoxy4G03263 Aquilegia oxysepala HOM05D000699 ORTHO05D000519 2.2e-07 60.1 68 48.5
Nitab4.5_0000650g0100 Nicotiana tabacum HOM05D000699 ORTHO05D000519 6.4e-07 58.5 66 45.5
PSO339G6344 Papaver somniferum HOM05D000699 ORTHO05D000519 8.4e-07 58.2 38 57.9
MBI07_g44593_MAGBIO Magnolia biondii HOM05D000699 ORTHO05D000519 1.4e-06 57.4 46 52.2


User provided reference genes

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