Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3619 Acer truncatum HOM05D003665 ORTHO05D004387 5.0e-148 527.7 260 100.0
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 1.4e-134 483.0 248 96.0
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 7.5e-120 434.1 248 84.3
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 7.8e-117 424.1 248 82.7
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 1.3e-116 423.3 248 81.9
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 6.6e-116 421.0 248 81.9
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 5.6e-115 417.9 249 81.5
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 6.2e-114 414.5 248 79.4
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 6.2e-114 414.5 249 79.9
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 6.2e-114 414.5 248 80.6
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 8.1e-114 414.1 248 79.4
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 1.4e-113 413.3 249 80.3
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.8e-113 412.9 248 79.4
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 2.3e-113 412.5 249 79.9
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 3.1e-113 412.1 249 79.5
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 4.0e-113 411.8 249 79.9
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 5.2e-113 411.4 249 79.9
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 5.2e-113 411.4 249 79.5
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 1.2e-112 410.2 249 80.3
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 1.2e-112 410.2 248 79.8
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 1.2e-112 410.2 248 80.2
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 2.6e-112 409.1 234 83.8
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 3.4e-112 408.7 250 79.6
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 4.4e-112 408.3 249 80.3
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 7.6e-112 407.5 249 80.7
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 7.6e-112 407.5 249 79.9
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 1.7e-111 406.4 249 80.7
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.7e-111 406.4 250 79.6
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 2.2e-111 406.0 248 79.4
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 2.9e-111 405.6 249 81.5
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.1e-110 403.7 256 77.0
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.4e-110 403.3 261 76.2
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 1.4e-110 403.3 249 78.3
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 1.4e-110 403.3 249 78.3
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 2.4e-110 402.5 249 78.7
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 2.4e-110 402.5 248 78.6
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 3.2e-110 402.1 249 77.9
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 4.1e-110 401.7 249 78.7
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 5.4e-110 401.4 249 78.7
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 9.2e-110 400.6 248 78.6
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 1.6e-109 399.8 249 77.1
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 2.1e-109 399.4 248 79.0
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 3.5e-109 398.7 248 75.8
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 4.6e-109 398.3 246 79.3
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 4.6e-109 398.3 249 78.3
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 4.6e-109 398.3 248 79.0
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 6.0e-109 397.9 248 77.8
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 6.0e-109 397.9 248 77.8
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 7.8e-109 397.5 249 77.1
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 1.3e-108 396.7 262 75.2
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 3.0e-108 395.6 248 74.6
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 3.0e-108 395.6 256 75.8
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 3.9e-108 395.2 256 75.4
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 5.1e-108 394.8 248 77.4
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 5.1e-108 394.8 245 77.6
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 5.1e-108 394.8 249 76.3
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 8.6e-108 394.0 249 75.5
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 8.6e-108 394.0 249 75.9
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 1.5e-107 393.3 248 75.8
Actinidia13994 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.9e-107 392.9 250 78.4
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 7.3e-107 391.0 234 82.1
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 1.2e-106 390.2 248 76.6
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 1.6e-106 389.8 249 77.1
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 4.7e-106 388.3 249 75.9
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 6.2e-106 387.9 249 73.9
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 6.2e-106 387.9 248 75.4
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 8.1e-106 387.5 249 76.3
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 8.1e-106 387.5 249 73.9
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 1.1e-105 387.1 249 74.7
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 1.4e-105 386.7 248 74.2
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 1.8e-105 386.3 248 75.8
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 1.8e-105 386.3 248 75.4
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 1.8e-105 386.3 248 75.4
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 3.1e-105 385.6 250 78.0
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 3.1e-105 385.6 248 75.4
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 4.0e-105 385.2 254 73.6
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 5.2e-105 384.8 240 79.2
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 5.2e-105 384.8 249 76.7
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 6.9e-105 384.4 254 76.0
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 6.9e-105 384.4 252 73.4
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 8.9e-105 384.0 230 81.7
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 1.2e-104 383.6 249 75.5
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 4.4e-104 381.7 248 75.0
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 5.8e-104 381.3 251 73.7
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 7.6e-104 380.9 248 73.8
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 9.9e-104 380.6 248 73.4
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 1.3e-103 380.2 249 73.5
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 1.7e-103 379.8 250 73.2
CDE08G0353 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 2.2e-103 379.4 249 72.3
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 4.9e-103 378.3 248 73.0
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 8.4e-103 377.5 253 71.9
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.1e-102 377.1 244 73.0
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 2.4e-102 375.9 235 75.3
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 2.4e-102 375.9 234 77.8
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 3.5e-101 372.1 248 72.6
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 1.0e-100 370.5 248 71.4
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 1.0e-100 370.5 248 71.8
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 3.0e-100 369.0 249 72.3
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 5.1e-100 368.2 249 70.7
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 5.1e-100 368.2 249 70.7
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 1.5e-99 366.7 248 71.0
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 3.3e-99 365.5 281 65.5
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 3.3e-99 365.5 249 72.3
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 5.6e-99 364.8 248 70.2
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 5.6e-99 364.8 249 73.9
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 9.6e-99 364.0 248 71.0
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 2.8e-98 362.5 248 70.2
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 3.6e-98 362.1 248 73.4
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 4.8e-98 361.7 234 73.5
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 6.2e-98 361.3 234 73.1
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 1.1e-97 360.5 248 73.0
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 1.1e-97 360.5 234 73.1
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 1.4e-97 360.1 241 71.0
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 1.4e-97 360.1 234 73.5
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 3.1e-97 359.0 254 68.5
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 6.9e-97 357.8 248 69.0
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 2.6e-96 355.9 254 68.5
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 3.4e-96 355.5 234 72.2
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 3.4e-96 355.5 249 71.5
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 3.4e-96 355.5 218 79.8
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 2.2e-95 352.8 233 72.1
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 7.9e-93 344.4 217 78.8
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 3.0e-92 342.4 222 77.0
CDE02G0373 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 3.3e-91 339.0 218 73.9
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.3e-90 337.0 213 78.4
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 2.8e-90 335.9 243 70.0
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 9.0e-89 330.9 213 76.1
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 9.0e-89 330.9 249 63.5
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 2.4e-86 322.8 224 70.1
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 3.2e-86 322.4 249 59.4
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 9.3e-86 320.9 249 63.5
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.6e-85 320.1 231 67.1
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 1.0e-84 317.4 233 67.0
Zm00001eb139700 Zea mays HOM05D003665 ORTHO05D004387 3.0e-84 315.8 248 61.7
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 1.6e-82 310.1 237 65.0
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 2.6e-80 302.8 195 76.9
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 9.3e-78 294.3 194 73.7
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 1.5e-75 287.0 194 72.7
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 3.4e-72 275.8 252 54.8
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 1.4e-70 270.4 249 51.4
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 7.2e-70 268.1 194 71.1
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 1.0e-68 264.2 208 67.3
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 2.3e-68 263.1 174 72.4
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 4.8e-66 255.4 204 63.2
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 1.4e-65 253.8 189 67.7
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 9.4e-62 241.1 256 48.8
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 7.9e-61 238.0 164 73.2
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 4.4e-59 232.3 249 45.8
TPR.G35439 Trifolium pratense HOM05D003665 ORTHO05D004387 1.9e-54 216.9 143 74.1
SHI09320 Sapria himalayana HOM05D003665 ORTHO05D004387 3.2e-54 216.1 189 58.7
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 8.8e-52 208.0 152 67.1
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 3.6e-45 186.0 216 44.9
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 8.2e-42 174.9 204 47.1
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 3.5e-32 142.9 289 31.1
TPR.G15544 Trifolium pratense HOM05D003665 ORTHO05D004387 8.0e-29 131.7 63 92.1
arahy.Tifrunner.gnm1.ann1.3H693L Arachis hypogaea HOM05D003665 ORTHO05D004387 1.4e-20 104.4 55 85.5
BolC4t27275H Brassica oleracea HOM05D003665 ORTHO05D004387 9.8e-19 98.2 129 45.0
MCO05G084 Micromonas commoda HOM05D003665 ORTHO05D004387 1.4e-12 77.8 338 22.5
BraA04t17717Z Brassica rapa HOM05D003665 ORTHO05D040370 3.2e-09 66.6 64 51.6
Cfa025752 Carpinus fangiana HOM05D003665 ORTHO05D004387 9.2e-09 65.1 242 24.8
HanXRQChr04g0103101 Helianthus annuus HOM05D003665 ORTHO05D004387 7.8e-08 62.0 37 70.3
C04p57550 Brassica napus HOM05D003665 ORTHO05D040370 3.0e-07 60.1 41 61.0
Cre03.g154500 Chlamydomonas reinhardtii HOM05D003665 ORTHO05D004387 9.5e-06 55.1 53 50.9
SHI09319 Sapria himalayana HOM05D003665 ORTHO05D364815 9.5e-06 55.1 28 75.0


User provided reference genes

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