Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3557 Acer truncatum HOM05D007861 ORTHO05D007271 5.0e-48 194.1 99 100.0
Ciclev10029681m.g Citrus clementina HOM05D007861 ORTHO05D007271 3.3e-23 111.7 82 70.7
Thecc.09G347700 Theobroma cacao HOM05D007861 ORTHO05D007271 2.4e-18 95.5 103 55.3
FvH4_3g31180 Fragaria vesca HOM05D007861 ORTHO05D007271 3.5e-17 91.7 106 53.8
FAN11G3777 Fragaria x ananassa HOM05D007861 ORTHO05D007271 3.5e-17 91.7 106 53.8
FAN25G1997 Fragaria x ananassa HOM05D007861 ORTHO05D007271 3.5e-17 91.7 106 53.8
Gohir.D05G106401 Gossypium hirsutum HOM05D007861 ORTHO05D007271 7.8e-17 90.5 90 58.9
Gorai.009G110500 Gossypium raimondii HOM05D007861 ORTHO05D007271 7.8e-17 90.5 90 58.9
Gohir.A05G106400 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.3e-16 89.7 90 56.7
Manes.11G150200 Manihot esculenta HOM05D007861 ORTHO05D007271 3.0e-16 88.6 103 46.6
Gorai.004G230800 Gossypium raimondii HOM05D007861 ORTHO05D007271 3.9e-16 88.2 105 52.4
RcHm_v2.0_Chr5g0057831 Rosa chinensis HOM05D007861 ORTHO05D007271 5.0e-16 87.8 106 52.8
FAN21G2212 Fragaria x ananassa HOM05D007861 ORTHO05D007271 6.6e-16 87.4 106 52.8
COL.COLO4_34705 Corchorus olitorius HOM05D007861 ORTHO05D007271 8.6e-16 87.0 89 55.1
Gohir.A08G200000 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.1e-15 86.7 105 51.4
FAN16G3504 Fragaria x ananassa HOM05D007861 ORTHO05D007271 1.5e-15 86.3 106 52.8
Prupe.6G107700 Prunus persica HOM05D007861 ORTHO05D007271 1.9e-15 85.9 97 56.7
Gohir.D08G217100 Gossypium hirsutum HOM05D007861 ORTHO05D007271 4.3e-15 84.7 105 51.4
Cpa.g.sc65.32 Carica papaya HOM05D007861 ORTHO05D007271 5.6e-15 84.3 94 56.4
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 8.1e-14 80.5 98 49.0
Medtr4g057830 Medicago truncatula HOM05D007861 ORTHO05D007271 3.1e-13 78.6 74 58.1
Manes.04G015900 Manihot esculenta HOM05D007861 ORTHO05D007271 8.9e-13 77.0 102 47.1
Sed0005749 Sechium edule HOM05D007861 ORTHO05D007271 1.2e-12 76.6 105 46.7
Phvul.005G132100 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 1.5e-12 76.3 103 50.5
Potri.009G008300 Populus trichocarpa HOM05D007861 ORTHO05D007271 2.0e-12 75.9 95 50.5
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 2.0e-12 75.9 98 50.0
Lalb_Chr03g0027611 Lupinus albus HOM05D007861 ORTHO05D007271 3.4e-12 75.1 99 47.5
Glyma.11G195000 Glycine max HOM05D007861 ORTHO05D007271 7.5e-12 73.9 102 47.1
Sed0017526 Sechium edule HOM05D007861 ORTHO05D007271 7.5e-12 73.9 100 45.0
TPR.G6167 Trifolium pratense HOM05D007861 ORTHO05D007271 7.5e-12 73.9 109 43.1
Sabra04G0145100 Salix brachista HOM05D007861 ORTHO05D007271 9.9e-12 73.6 83 54.2
Lalb_Chr14g0374511 Lupinus albus HOM05D007861 ORTHO05D007271 1.7e-11 72.8 105 47.6
Lalb_Chr24g0394821 Lupinus albus HOM05D007861 ORTHO05D007271 2.2e-11 72.4 105 48.6
Glyma.12G079100 Glycine max HOM05D007861 ORTHO05D007271 2.9e-11 72.0 101 44.6
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 1.1e-10 70.1 82 51.2
arahy.Tifrunner.gnm1.ann1.ALS1H8 Arachis hypogaea HOM05D007861 ORTHO05D007271 1.9e-10 69.3 97 47.4
CsaV3_6G014180 Cucumis sativus L. HOM05D007861 ORTHO05D007271 3.2e-10 68.6 99 45.5
Potri.004G213900 Populus trichocarpa HOM05D007861 ORTHO05D007271 3.2e-10 68.6 98 45.9
MSTRG.21100 Avicennia marina HOM05D007861 ORTHO05D007271 4.1e-10 68.2 78 52.6
Glyma.12G177000 Glycine max HOM05D007861 ORTHO05D007271 4.1e-10 68.2 102 48.0
Glyma.13G323700 Glycine max HOM05D007861 ORTHO05D007271 4.1e-10 68.2 102 49.0
Lj3g0021425 Lotus japonicus HOM05D007861 ORTHO05D007271 4.1e-10 68.2 107 45.8
Lj3g0027314 Lotus japonicus HOM05D007861 ORTHO05D007271 4.1e-10 68.2 96 44.8
Phvul.011G083700 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 4.1e-10 68.2 98 46.9
MELO3C026916.2 Cucumis melo HOM05D007861 ORTHO05D007271 5.4e-10 67.8 93 46.2
Sabra09G0004800 Salix brachista HOM05D007861 ORTHO05D007271 5.4e-10 67.8 98 45.9
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 7.1e-10 67.4 105 42.9
PGSC0003DMG400019683 Solanum tuberosum HOM05D007861 ORTHO05D007271 1.2e-09 66.6 56 62.5
VMungo1127G1395 Vigna mungo HOM05D007861 ORTHO05D007271 1.6e-09 66.2 97 45.4
ClCG02G021400 Citrullus lanatus HOM05D007861 ORTHO05D007271 3.5e-09 65.1 72 48.6
Lalb_Chr01g0004491 Lupinus albus HOM05D007861 ORTHO05D007271 3.5e-09 65.1 97 47.4
Sopen06g031390 Solanum pennellii HOM05D039995 ORTHO05D007271 3.5e-09 65.1 99 44.4
Solyc11g069730.1 Solanum lycopersicum HOM05D007861 ORTHO05D007271 4.6e-09 64.7 94 44.7
Potri.010G226200 Populus trichocarpa HOM05D007861 ORTHO05D007271 1.7e-08 62.8 106 41.5
DCAR_018786 Daucus carota HOM05D007861 ORTHO05D007271 2.3e-08 62.4 80 46.2
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 2.3e-08 62.4 104 40.4
Medtr2g095310 Medicago truncatula HOM05D007861 ORTHO05D007271 5.1e-08 61.2 103 41.7
Migut.N02575 Erythranthe guttata HOM05D007861 ORTHO05D007271 6.6e-08 60.8 82 47.6
TPR.G11489 Trifolium pratense HOM05D007861 ORTHO05D007271 6.6e-08 60.8 97 44.3
CiPaw.14G086500 Carya illinoinensis HOM05D007861 ORTHO05D007271 2.5e-07 58.9 100 43.0
Hma1.2p1_0569F.1_g180260 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 2.5e-07 58.9 59 50.8
Gohir.D05G294900 Gossypium hirsutum HOM05D009695 ORTHO05D007271 3.3e-07 58.5 97 41.2
Manes.07G095300 Manihot esculenta HOM05D009695 ORTHO05D007271 3.3e-07 58.5 92 41.3
Gohir.A05G294400 Gossypium hirsutum HOM05D009695 ORTHO05D007271 4.3e-07 58.2 97 41.2
Gorai.009G311600 Gossypium raimondii HOM05D009695 ORTHO05D007271 5.6e-07 57.8 97 41.2
Potri.008G036000 Populus trichocarpa HOM05D007861 ORTHO05D007271 7.3e-07 57.4 97 39.2
Aqoxy1G01166 Aquilegia oxysepala HOM05D007861 ORTHO05D007271 1.2e-06 56.6 90 41.1
Migut.F01962 Erythranthe guttata HOM05D007861 ORTHO05D007271 1.2e-06 56.6 73 45.2
CiPaw.01G269700 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.6e-06 56.2 105 40.0
Cfa001682 Carpinus fangiana HOM05D009695 ORTHO05D007271 2.1e-06 55.8 105 41.9
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 2.1e-06 55.8 104 40.4
Atru.chr12.833 Acer truncatum HOM05D009695 ORTHO05D007271 2.8e-06 55.5 80 41.2
COL.COLO4_10198 Corchorus olitorius HOM05D009695 ORTHO05D007271 2.8e-06 55.5 79 40.5
Sp4g10850 Schrenkiella parvula HOM05D014739 ORTHO05D007271 3.6e-06 55.1 74 51.4
Carub.0004s0882 Capsella rubella HOM05D014739 ORTHO05D007271 4.7e-06 54.7 91 42.9
BraA04t17695Z Brassica rapa HOM05D014739 ORTHO05D007271 6.2e-06 54.3 92 44.6
Haze_16853 Corylus avellana HOM05D009695 ORTHO05D007271 6.2e-06 54.3 89 42.7
Thecc.10G081700 Theobroma cacao HOM05D009695 ORTHO05D007271 6.2e-06 54.3 73 42.5
BcaC02g08213 Brassica carinata HOM05D014739 ORTHO05D007271 8.1e-06 53.9 92 44.6
A04p21280 Brassica napus HOM05D014739 ORTHO05D007271 8.1e-06 53.9 92 44.6
BolC4t27246H Brassica oleracea HOM05D014739 ORTHO05D007271 8.1e-06 53.9 92 44.6
Migut.D02257 Erythranthe guttata HOM05D007861 ORTHO05D007271 8.1e-06 53.9 68 45.6
Lsat_1_v5_gn_6_43600 Lactuca sativa HOM05D007861 ORTHO05D007271 8.1e-06 53.9 43 55.8


User provided reference genes

Program Settings