Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3528 Acer truncatum HOM05D006101 ORTHO05D007422 3.5e-302 1040.8 522 100.0
Ciclev10028403m.g Citrus clementina HOM05D006101 ORTHO05D007422 1.3e-174 617.1 452 69.0
GSVIVG01031479001 Vitis vinifera HOM05D006101 ORTHO05D007422 1.4e-173 613.6 452 67.7
Potri.009G006200 Populus trichocarpa HOM05D006101 ORTHO05D007422 1.0e-171 607.4 448 67.2
QL01p015279 Quercus lobata HOM05D006101 ORTHO05D007422 2.7e-169 599.4 451 66.7
Manes.04G013700 Manihot esculenta HOM05D006101 ORTHO05D007422 6.1e-169 598.2 452 64.6
Cfa010291 Carpinus fangiana HOM05D006101 ORTHO05D007422 7.9e-169 597.8 451 66.3
TAR636G3121 Trochodendron aralioides HOM05D006101 ORTHO05D007422 2.3e-168 596.3 460 65.7
TWI75G1238 Tripterygium wilfordii HOM05D006101 ORTHO05D007422 5.7e-167 591.7 448 65.4
CiPaw.13G123600 Carya illinoinensis HOM05D006101 ORTHO05D007422 1.4e-165 587.0 448 65.0
Haze_23705 Corylus avellana HOM05D006101 ORTHO05D007422 5.9e-164 581.6 450 66.2
CsaV3_1G013150 Cucumis sativus L. HOM05D006101 ORTHO05D007422 1.7e-163 580.1 451 61.6
Thecc.09G350300 Theobroma cacao HOM05D006101 ORTHO05D007422 2.7e-161 572.8 454 63.0
ClCG03G002470 Citrullus lanatus HOM05D006101 ORTHO05D007422 8.8e-160 567.8 451 60.1
Dinv16214 Davidia involucrata HOM05D006101 ORTHO05D007422 5.7e-159 565.1 453 64.7
Sed0008610 Sechium edule HOM05D006101 ORTHO05D007422 6.3e-158 561.6 448 60.7
MD11G1147300 Malus domestica HOM05D006101 ORTHO05D007422 8.2e-158 561.2 445 59.8
Prupe.6G111800 Prunus persica HOM05D006101 ORTHO05D007422 2.4e-157 559.7 451 60.8
Duzib150G0708 Durio zibethinus HOM05D006101 ORTHO05D007422 1.1e-154 550.8 451 61.4
CSS0020443 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 2.7e-153 546.2 458 62.9
RcHm_v2.0_Chr5g0056961 Rosa chinensis HOM05D006101 ORTHO05D007422 6.3e-150 535.0 454 59.0
Gohir.A03G029500 Gossypium hirsutum HOM05D006101 ORTHO05D007422 7.0e-149 531.6 453 59.8
Gohir.D03G139000 Gossypium hirsutum HOM05D006101 ORTHO05D007422 1.2e-148 530.8 453 60.0
COL.COLO4_11107 Corchorus olitorius HOM05D006101 ORTHO05D007422 1.0e-147 527.7 451 59.6
THA.LOC104800579 Tarenaya hassleriana HOM05D006101 ORTHO05D007422 1.0e-147 527.7 451 57.6
Gorai.003G145800 Gossypium raimondii HOM05D006101 ORTHO05D007422 2.2e-147 526.6 453 59.8
FvH4_3g30770 Fragaria vesca HOM05D006101 ORTHO05D007422 3.2e-146 522.7 453 58.3
MELO3C004994.2 Cucumis melo HOM05D006101 ORTHO05D007422 5.5e-146 521.9 498 53.4
Phvul.011G085500 Phaseolus vulgaris HOM05D006101 ORTHO05D007422 9.4e-146 521.2 453 56.3
Lalb_Chr19g0136961 Lupinus albus HOM05D006101 ORTHO05D007422 3.0e-144 516.2 455 56.9
Actinidia03696 Actinidia chinensis HOM05D006101 ORTHO05D007422 9.7e-143 511.1 457 58.9
VMungo1127G1509 Vigna mungo HOM05D006101 ORTHO05D007422 2.8e-142 509.6 456 55.7
FAN11G1700 Fragaria x ananassa HOM05D002446 ORTHO05D007422 4.8e-142 508.8 457 57.3
Hma1.2p1_0051F.1_g029390 Hydrangea macrophylla HOM05D006101 ORTHO05D007422 6.3e-142 508.4 433 60.0
CANSAT56G2622 Cannabis sativa HOM05D006101 ORTHO05D007422 1.6e-140 503.8 435 59.3
CSS0026133 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 2.0e-140 503.4 409 63.3
Lj2C1009G5 Lonicera japonica HOM05D006101 ORTHO05D007422 2.7e-140 503.1 488 55.5
Carub.0004s0893 Capsella rubella HOM05D006101 ORTHO05D007422 1.0e-139 501.1 452 54.2
Lj3g0002990 Lotus japonicus HOM05D006101 ORTHO05D007422 1.3e-139 500.7 454 54.6
FAN21G1086 Fragaria x ananassa HOM05D006101 ORTHO05D007422 3.8e-139 499.2 453 57.6
Glyma.11G193400 Glycine max HOM05D006101 ORTHO05D007422 3.8e-139 499.2 454 55.9
FAN25G1259 Fragaria x ananassa HOM05D006101 ORTHO05D007422 3.2e-138 496.1 457 56.5
Sp4g10940 Schrenkiella parvula HOM05D006101 ORTHO05D007422 3.2e-138 496.1 451 54.3
AT2G28130 Arabidopsis thaliana HOM05D006101 ORTHO05D007422 7.2e-138 495.0 453 54.3
FAN16G0923 Fragaria x ananassa HOM05D006101 ORTHO05D007422 1.2e-137 494.2 453 56.1
PGR102G2892 Punica granatum HOM05D006101 ORTHO05D007422 1.2e-137 494.2 445 55.5
CAN.G546.34 Capsicum annuum HOM05D006101 ORTHO05D007422 1.6e-137 493.8 454 54.0
Sabra09G0003500 Salix brachista HOM05D006101 ORTHO05D007422 2.7e-137 493.0 373 64.1
Solyc11g066340.2 Solanum lycopersicum HOM05D006101 ORTHO05D007422 6.8e-136 488.4 455 53.8
Sopen11g026080 Solanum pennellii HOM05D006101 ORTHO05D007422 6.8e-136 488.4 455 53.8
Ca_30122_v3 Cicer arietinum L. HOM05D006101 ORTHO05D007422 7.5e-135 485.0 450 54.2
Lsat_1_v5_gn_6_44300 Lactuca sativa HOM05D006101 ORTHO05D007422 4.8e-134 482.3 453 55.4
PGSC0003DMG400000413 Solanum tuberosum HOM05D006101 ORTHO05D007422 4.8e-134 482.3 453 53.9
Psat0s1387g0080 Pisum sativum HOM05D006101 ORTHO05D007422 1.1e-133 481.1 452 54.4
Nitab4.5_0000329g0130 Nicotiana tabacum HOM05D006101 ORTHO05D007422 1.4e-133 480.7 465 52.3
HanXRQChr13g0396251 Helianthus annuus HOM05D006101 ORTHO05D007422 5.4e-133 478.8 453 53.6
BcaB02g10150 Brassica carinata HOM05D006101 ORTHO05D007422 9.1e-133 478.0 452 52.7
Medtr4g057493 Medicago truncatula HOM05D006101 ORTHO05D007422 9.1e-133 478.0 452 53.3
Aqoxy1G01111 Aquilegia oxysepala HOM05D006101 ORTHO05D007422 1.2e-132 477.6 460 54.1
Eucgr.B03934 Eucalyptus grandis HOM05D006101 ORTHO05D007422 2.0e-132 476.9 452 55.3
AL4G22020 Arabidopsis lyrata HOM05D006101 ORTHO05D007422 7.7e-132 474.9 451 53.0
BcaC02g10947 Brassica carinata HOM05D006101 ORTHO05D007422 2.3e-131 473.4 452 52.7
CARHR120970 Cardamine hirsuta HOM05D006101 ORTHO05D007422 1.1e-130 471.1 452 52.4
Ca_02469_v3 Cicer arietinum L. HOM05D006101 ORTHO05D007422 3.3e-130 469.5 450 53.3
Aa31LG5G8010 Aethionema arabicum HOM05D006101 ORTHO05D007422 2.8e-129 466.5 451 52.1
Rhsim01G0211100 Rhododendron simsii HOM05D006101 ORTHO05D007422 8.9e-128 461.5 454 55.3
BolC4t23840H Brassica oleracea HOM05D006101 ORTHO05D007422 4.4e-127 459.1 452 52.2
C04p23380 Brassica napus HOM05D006101 ORTHO05D007422 9.8e-127 458.0 452 51.8
PSO063G0796 Papaver somniferum HOM05D006101 ORTHO05D007422 1.3e-126 457.6 466 53.0
MSTRG.21091 Avicennia marina HOM05D006101 ORTHO05D007422 2.2e-126 456.8 449 53.0
Thhalv10016576m.g Eutrema salsugineum HOM05D006101 ORTHO05D007422 3.7e-126 456.1 482 49.8
Peaxi162Scf00086g01114 Petunia axillaris HOM05D006101 ORTHO05D007422 1.8e-125 453.8 444 52.9
A07p18660 Brassica napus HOM05D006101 ORTHO05D007422 3.5e-124 449.5 463 50.3
BraA07t29579Z Brassica rapa HOM05D006101 ORTHO05D007422 5.9e-124 448.7 452 51.5
Cc01_g10370 Coffea canephora HOM05D006101 ORTHO05D007422 5.9e-124 448.7 454 52.0
PSO339G3309 Papaver somniferum HOM05D006101 ORTHO05D007422 1.3e-123 447.6 466 52.1
ATR0088G017 Amborella trichopoda HOM05D006101 ORTHO05D007422 1.9e-122 443.7 434 50.9
Migut.D02287 Erythranthe guttata HOM05D006101 ORTHO05D007422 4.0e-120 436.0 453 51.4
Nn2g13844 Nelumbo nucifera HOM05D006101 ORTHO05D007422 2.0e-119 433.7 400 55.2
Sc06g0010850 Simmondsia chinensis HOM05D006101 ORTHO05D007422 3.4e-119 433.0 458 49.6
Oeu007313.2 Olea europaea HOM05D006101 ORTHO05D007422 3.9e-115 419.5 486 47.1
CDE09G0605 Ceratophyllum demersum HOM05D006101 ORTHO05D007422 2.5e-114 416.8 455 49.2
vmacro14396 Vaccinium macrocarpon HOM05D006101 ORTHO05D007422 2.8e-113 413.3 448 50.7
EL10Ac9g22610 Beta vulgaris HOM05D006101 ORTHO05D007422 5.2e-112 409.1 467 46.7
SGA_v2.0_scaffold27G11561 Striga asiatica HOM05D006101 ORTHO05D007422 6.8e-112 408.7 461 47.3
MBI13_g39328_MAGBIO Magnolia biondii HOM05D006101 ORTHO05D007422 2.6e-111 406.8 553 43.9
SalBow4G3219 Salvia bowleyana HOM05D006101 ORTHO05D007422 1.7e-110 404.1 451 49.0
Dinv29372 Davidia involucrata HOM05D006101 ORTHO05D007422 2.1e-105 387.1 338 58.9
AUR62029180 Chenopodium quinoa HOM05D006101 ORTHO05D007422 1.8e-104 384.0 452 47.3
ECA233G2185 Erigeron canadensis HOM05D006101 ORTHO05D007422 1.7e-102 377.5 454 46.0
Glyma.12G080600 Glycine max HOM05D006101 ORTHO05D007422 1.2e-97 361.3 374 50.0
Os01g0241100 Oryza sativa ssp. japonica HOM05D006101 ORTHO05D007422 5.2e-96 355.9 462 45.2
arahy.Tifrunner.gnm1.ann1.P58SHS Arachis hypogaea HOM05D006101 ORTHO05D007422 1.7e-94 350.9 469 43.3
DCAR_018770 Daucus carota HOM05D006101 ORTHO05D007422 1.4e-93 347.8 365 51.8
arahy.Tifrunner.gnm1.ann1.V5BWPF Arachis hypogaea HOM05D006101 ORTHO05D007422 2.7e-92 343.6 463 43.4
HPP92_020176 Vanilla planifolia HOM05D006101 ORTHO05D007422 1.0e-91 341.7 457 42.0
arahy.Tifrunner.gnm1.ann1.66BK9V Arachis hypogaea HOM05D006101 ORTHO05D007422 5.1e-91 339.3 444 43.9
Ah.01g014140 Amaranthus hybridus HOM05D006101 ORTHO05D007422 7.1e-85 318.9 479 41.1
Nitab4.5_0003880g0040 Nicotiana tabacum HOM05D006101 ORTHO05D007422 9.3e-85 318.5 464 40.9
unitig_747.g21973 Utricularia gibba HOM05D006101 ORTHO05D007422 5.3e-80 302.8 360 44.2
Hund08365 Selenicereus undatus HOM05D006101 ORTHO05D007422 2.4e-77 293.9 458 38.9
AUR62014957 Chenopodium quinoa HOM05D006101 ORTHO05D007422 1.6e-73 281.2 379 41.2
Hma1.2p1_0051F.1_g029400 Hydrangea macrophylla HOM05D006101 ORTHO05D007422 2.6e-71 273.9 226 61.1
Zm00001eb118850 Zea mays HOM05D006101 ORTHO05D007422 7.1e-69 265.8 353 43.6
HanXRQChr04g0111151 Helianthus annuus HOM05D006101 ORTHO05D007422 3.7e-65 253.4 345 44.6
VMungo1215G2511 Vigna mungo HOM05D006101 ORTHO05D007422 9.7e-58 228.8 348 38.5
SHI06228 Sapria himalayana HOM05D006101 ORTHO05D007422 1.1e-45 188.7 190 50.0
arahy.Tifrunner.gnm1.ann1.KM9ELV Arachis hypogaea HOM05D006101 ORTHO05D007422 2.6e-39 167.5 269 38.3
Mapoly0094s0062 Marchantia polymorpha HOM05D006101 ORTHO05D007422 2.7e-36 157.5 451 26.6
arahy.Tifrunner.gnm1.ann1.PH2QKZ Arachis hypogaea HOM05D006101 ORTHO05D007422 4.7e-36 156.8 239 39.7
Pp3c4_7040 Physcomitrium patens HOM05D006101 ORTHO05D007422 1.5e-34 151.8 454 27.8
SHI06230 Sapria himalayana HOM05D006101 ORTHO05D007422 7.0e-32 142.9 139 54.7
Actinidia20431 Actinidia chinensis HOM05D006101 ORTHO05D007422 7.7e-31 139.4 115 57.4
SEGI_30921 Sequoiadendron giganteum HOM05D006101 ORTHO05D007422 1.0e-30 139.0 217 34.1
arahy.Tifrunner.gnm1.ann1.EU9JMW Arachis hypogaea HOM05D006101 ORTHO05D007422 8.0e-28 129.4 180 42.2
SEGI_35146 Sequoiadendron giganteum HOM05D006101 ORTHO05D007422 4.8e-25 120.2 131 48.1
arahy.Tifrunner.gnm1.ann1.88XJ4T Arachis hypogaea HOM05D006101 ORTHO05D007422 6.5e-22 109.8 109 51.4
SMO351G0356 Selaginella moellendorffii HOM05D006101 ORTHO05D007422 4.7e-20 103.6 314 25.2
TPR.G36765 Trifolium pratense HOM05D006101 ORTHO05D007422 2.2e-17 94.7 86 57.0
AagrBONN_evm.TU.Sc2ySwM_228.2481 Anthoceros agrestis HOM05D006101 ORTHO05D007422 2.7e-15 87.8 421 23.5
arahy.Tifrunner.gnm1.ann1.AAV4SA Arachis hypogaea HOM05D006101 ORTHO05D007422 2.3e-11 74.7 101 43.6
CBR_g12009 Chara braunii HOM05D006101 ORTHO05D007422 4.0e-11 73.9 506 21.3
Glyma.09G075800 Glycine max HOM05D006101 ORTHO05D007422 1.2e-07 62.4 57 56.1
SHI06229 Sapria himalayana HOM05D006101 ORTHO05D007422 2.7e-07 61.2 52 63.5


User provided reference genes

Program Settings