Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 2358.9 1239 100.0
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 2348.5 1239 99.6
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 0.0e+00 1697.9 1211 75.3
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 0.0e+00 1535.4 1210 66.9
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 0.0e+00 1492.2 1178 68.6
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 0.0e+00 1479.5 1217 65.9
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 0.0e+00 1479.5 1210 66.2
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 0.0e+00 1474.5 1175 67.5
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1474.1 1218 65.4
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 0.0e+00 1468.8 1210 64.5
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 0.0e+00 1463.7 1213 66.4
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 0.0e+00 1463.4 1243 65.5
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1444.1 1225 65.1
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 0.0e+00 1442.2 1209 65.8
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1442.2 1213 66.7
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1439.5 1218 64.4
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 0.0e+00 1431.4 1211 67.1
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 0.0e+00 1422.9 1177 66.4
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 0.0e+00 1422.9 1217 63.4
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1411.4 1268 63.6
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1408.7 1173 65.9
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 0.0e+00 1401.0 1139 65.6
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1391.3 1279 61.8
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1389.4 1234 64.1
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 0.0e+00 1342.8 1176 62.2
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 0.0e+00 1333.9 1218 62.8
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 0.0e+00 1332.4 1218 61.5
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1317.4 1173 61.4
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1308.9 1209 63.3
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1307.0 1212 61.1
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 0.0e+00 1307.0 1169 61.8
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1305.0 1212 60.9
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 0.0e+00 1303.9 1243 59.5
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 0.0e+00 1303.5 1165 61.5
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 0.0e+00 1302.0 1165 61.1
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 0.0e+00 1301.6 1228 59.9
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 0.0e+00 1295.8 1207 61.1
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 0.0e+00 1294.6 1228 59.2
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 0.0e+00 1291.6 1216 60.4
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 0.0e+00 1286.2 1217 59.9
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 0.0e+00 1276.5 1165 59.9
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 0.0e+00 1276.2 1174 59.7
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 0.0e+00 1265.4 1082 65.6
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 0.0e+00 1253.0 1284 57.5
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 0.0e+00 1252.7 1181 59.9
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 0.0e+00 1245.3 1238 56.8
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 0.0e+00 1228.0 1184 57.3
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 0.0e+00 1226.1 1246 56.4
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 0.0e+00 1221.1 1236 55.8
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 0.0e+00 1214.5 1235 55.8
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1205.3 1284 55.2
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 0.0e+00 1199.9 1218 57.7
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 0.0e+00 1193.7 1171 56.9
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 0.0e+00 1176.4 1230 55.0
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 0.0e+00 1174.5 1212 56.8
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 0.0e+00 1168.7 1013 64.3
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 0.0e+00 1166.0 1209 54.9
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 0.0e+00 1165.6 1187 56.3
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 0.0e+00 1162.9 1203 55.2
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1140.9 1221 54.0
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1135.6 1219 54.1
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 0.0e+00 1134.0 1204 54.7
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1119.4 1232 54.5
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1108.2 1219 53.9
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 0.0e+00 1105.9 1172 54.4
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 0.0e+00 1096.3 1228 54.9
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1091.3 1275 50.7
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 0.0e+00 1081.2 1218 52.2
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 0.0e+00 1079.3 1211 52.1
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 2.5e-311 1072.4 1186 53.5
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 4.6e-308 1061.6 1237 50.8
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 1.7e-302 1043.1 1211 51.2
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 2.7e-300 1035.8 1180 52.3
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 1.3e-299 1033.5 1170 52.2
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 2.4e-296 1022.7 1223 52.0
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 5.1e-291 1005.0 1112 52.9
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 6.7e-291 1004.6 1060 54.9
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 2.2e-286 989.6 1025 55.4
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 4.6e-284 981.9 1210 47.5
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 6.7e-283 978.0 771 69.5
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 1.3e-262 910.6 1281 46.5
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 2.7e-260 902.9 747 65.6
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 2.4e-248 863.2 1217 44.6
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 1.5e-245 854.0 1165 43.9
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 1.3e-238 830.9 1056 46.9
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 2.5e-237 826.6 801 59.8
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 2.5e-213 746.9 978 46.0
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 5.8e-210 735.7 1205 42.1
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 2.4e-179 634.0 607 54.7
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 5.1e-174 616.3 1169 37.9
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 2.5e-168 597.4 1235 35.4
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 8.8e-150 535.8 1139 36.7
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 5.0e-145 520.0 1290 33.3
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 1.8e-131 474.9 389 63.0
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 1.7e-129 468.4 617 47.3
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 9.5e-112 409.5 387 56.6
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 1.0e-89 336.3 445 49.4
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 2.3e-81 308.5 513 39.4
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 1.7e-68 265.8 389 40.6
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 4.2e-67 261.2 1292 27.4
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.6e-50 206.1 211 55.0
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 8.2e-39 167.2 261 39.8
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 1.1e-38 166.8 272 41.5
Dinv29380 Davidia involucrata HOM05D006963 ORTHO05D008783 6.7e-33 147.5 180 53.3
CSS0014134 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 5.3e-30 137.9 168 49.4
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 2.6e-29 135.6 86 69.8
Nn2g13854 Nelumbo nucifera HOM05D006963 ORTHO05D008783 1.3e-28 133.3 123 54.5
Oeu008361.1 Olea europaea HOM05D006963 ORTHO05D008783 2.5e-27 129.0 142 50.7
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 1.0e-25 123.6 72 79.2
MD11G1148100 Malus domestica HOM05D006963 ORTHO05D008783 1.8e-25 122.9 110 63.6
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 4.4e-24 118.2 93 58.1
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 7.0e-22 110.9 91 52.7
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.3e-15 90.1 83 51.8
TAR629G2211 Trochodendron aralioides HOM05D002089 ORTHO05D022294 2.3e-09 69.3 82 47.6
Pp3c7_26050 Physcomitrium patens HOM05D006963 ORTHO05D008783 6.3e-07 61.2 74 39.2


User provided reference genes

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