Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 0.0e+00 1588.2 799 100.0
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 0.0e+00 1119.8 803 71.5
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 0.0e+00 1107.4 798 71.4
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 0.0e+00 1090.1 797 70.1
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 0.0e+00 1089.7 800 70.1
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 0.0e+00 1077.0 811 67.1
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 0.0e+00 1075.1 812 68.6
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 1.1e-311 1073.2 809 68.9
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 1.1e-311 1073.2 798 69.3
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 5.1e-308 1060.8 797 69.1
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 8.1e-306 1053.5 812 67.1
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 6.8e-305 1050.4 814 66.7
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 3.4e-304 1048.1 805 66.6
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 2.9e-303 1045.0 809 65.9
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 6.4e-303 1043.9 801 67.3
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 4.6e-301 1037.7 809 66.6
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 1.7e-300 1035.8 819 66.8
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 1.1e-299 1033.1 813 66.4
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 2.4e-297 1025.4 801 65.7
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.2e-296 1023.1 811 66.7
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 2.2e-295 1018.8 799 65.2
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 3.8e-295 1018.1 814 66.2
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 7.1e-294 1013.8 819 65.9
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 6.0e-293 1010.7 801 65.0
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 6.0e-293 1010.7 815 64.7
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 4.3e-291 1004.6 802 64.7
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 1.1e-289 1000.0 803 64.6
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 3.1e-289 998.4 793 63.9
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 1.3e-287 993.0 800 63.5
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 1.3e-287 993.0 890 60.4
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 2.2e-287 992.3 800 63.2
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 3.8e-287 991.5 812 64.4
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 4.9e-287 991.1 796 63.6
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 7.1e-286 987.3 818 64.7
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.6e-280 968.8 816 63.6
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 3.8e-279 964.9 807 62.6
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 3.0e-276 955.3 812 63.2
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 2.5e-275 952.2 805 61.7
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 3.7e-274 948.3 800 60.9
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 3.1e-273 945.3 787 63.0
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 4.2e-270 934.9 677 70.3
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 3.5e-269 931.8 803 60.5
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 2.5e-267 925.6 804 61.7
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.1e-266 922.5 796 59.9
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 2.1e-266 922.5 810 59.5
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 4.1e-265 918.3 809 58.8
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 9.0e-265 917.1 814 59.6
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 9.3e-262 907.1 799 58.6
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 4.6e-261 904.8 722 65.2
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 1.0e-260 903.7 818 59.3
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 1.9e-259 899.4 802 60.0
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 1.9e-259 899.4 807 58.7
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 4.3e-259 898.3 815 58.0
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 5.7e-259 897.9 805 59.0
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 1.6e-258 896.3 791 59.3
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 2.2e-258 896.0 800 58.5
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 1.1e-257 893.6 820 59.4
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 3.1e-257 892.1 799 58.3
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 2.6e-256 889.0 800 58.4
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 5.9e-256 887.9 803 60.1
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 7.7e-256 887.5 804 56.5
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 3.8e-255 885.2 800 58.0
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 1.9e-254 882.9 803 59.8
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 9.4e-254 880.6 813 55.0
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 7.4e-251 870.9 789 57.9
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 1.8e-249 866.3 743 62.6
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 3.1e-249 865.5 790 57.7
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 1.0e-247 860.5 828 56.0
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.3e-247 860.1 800 59.0
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 2.2e-247 859.4 719 63.8
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 1.6e-245 853.2 821 56.2
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 9.7e-243 844.0 748 59.5
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 1.3e-242 843.6 799 56.9
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.1e-241 840.5 760 57.6
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 8.0e-237 824.3 794 55.8
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.5e-231 804.7 566 73.1
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 1.5e-230 803.5 802 52.5
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.2e-229 800.4 752 56.9
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 4.4e-227 792.0 803 53.2
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.7e-226 788.9 790 57.0
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 4.8e-226 788.5 797 54.1
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 4.0e-220 768.8 803 52.4
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 6.8e-220 768.1 800 52.0
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 1.2e-216 757.3 806 51.6
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.2e-216 757.3 758 54.0
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 6.6e-215 751.5 773 54.1
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 9.5e-214 747.7 770 53.4
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 1.2e-213 747.3 803 52.1
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 6.8e-212 741.5 495 74.3
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.3e-210 737.3 672 57.7
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 5.4e-209 731.9 800 50.1
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 7.8e-208 728.0 450 81.1
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 3.9e-207 725.7 803 49.3
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 1.5e-206 723.8 952 45.7
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 4.3e-206 722.2 717 54.4
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 1.3e-199 700.7 710 53.9
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 2.9e-186 656.4 819 48.7
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 3.4e-179 632.9 804 44.7
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 3.9e-175 619.4 518 60.4
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 3.1e-172 609.8 482 65.1
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.4e-161 574.3 502 61.0
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 5.3e-156 555.8 417 68.6
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 4.9e-154 549.3 803 43.1
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 8.2e-149 531.9 830 38.0
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 5.3e-132 476.1 487 55.4
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 9.1e-132 475.3 399 64.9
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.2e-131 474.9 519 50.5
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 1.1e-126 458.4 797 37.1
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.2e-112 411.8 287 71.4
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 5.2e-111 406.4 481 46.6
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 6.8e-111 406.0 368 60.1
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 5.4e-108 396.4 331 64.0
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 5.5e-105 386.3 367 59.7
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 1.3e-101 375.2 255 73.3
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 1.7e-101 374.8 366 57.7
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 6.8e-95 352.8 222 76.6
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 6.8e-95 352.8 222 76.6
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 8.9e-95 352.4 977 28.4
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.9e-90 337.0 236 74.6
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 9.5e-89 332.4 280 65.0
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.3e-85 322.0 300 56.7
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 8.3e-85 319.3 353 52.1
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 1.6e-83 315.1 617 37.1
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 2.3e-82 311.2 353 51.6
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 1.9e-81 308.1 261 62.1
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 5.6e-81 306.6 334 52.1
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.6e-80 305.1 465 42.2
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 1.5e-78 298.5 530 35.7
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 4.6e-75 287.0 349 48.1
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 9.9e-70 269.2 236 57.2
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.0e-62 245.0 239 54.0
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 4.3e-57 227.3 194 57.2
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 3.6e-56 224.2 510 31.2
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 9.3e-52 209.5 387 35.7
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 2.1e-48 198.4 470 29.6
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.5e-46 190.7 113 81.4
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 4.0e-39 167.5 137 55.5
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 9.0e-39 166.4 176 51.7
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 9.0e-39 166.4 176 51.7
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.6e-38 164.9 125 65.6
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 1.1e-31 142.9 111 64.0
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 1.5e-30 139.0 171 49.7
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 3.4e-30 137.9 171 49.7
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.1e-28 132.9 230 39.1
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 5.5e-28 130.6 202 41.1
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 6.3e-24 117.1 78 75.6
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 6.9e-23 113.6 79 69.6
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.4e-20 105.9 76 67.1
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 7.2e-20 103.6 155 39.4
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 1.5e-17 95.9 73 63.0
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 1.5e-17 95.9 855 21.2
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 1.1e-15 89.7 85 52.9
Psat5g100440 Pisum sativum HOM05D004183 ORTHO05D005022 1.2e-14 86.3 155 41.3
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 8.5e-13 80.1 74 48.6
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 4.7e-11 74.3 136 39.7
CARHR185280 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.4e-10 72.8 45 73.3
C06p19910 Brassica napus HOM05D016195 ORTHO05D033444 2.4e-07 62.0 46 56.5
C04p45760 Brassica napus HOM05D004183 ORTHO05D005022 5.3e-07 60.8 49 55.1
BolC8t52359H Brassica oleracea HOM05D016195 ORTHO05D033444 7.0e-07 60.5 34 73.5
BolC4t26161H Brassica oleracea HOM05D004183 ORTHO05D005022 2.0e-06 58.9 49 53.1
BcaB06g27300 Brassica carinata HOM05D004183 ORTHO05D005022 4.5e-06 57.8 79 38.0


User provided reference genes

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