Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 4.4e-95 351.3 176 100.0
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 1.0e-83 313.5 175 88.0
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.5e-82 309.7 180 86.1
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 1.5e-82 309.7 180 83.9
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 2.5e-82 308.9 180 85.6
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 7.2e-82 307.4 177 87.0
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 1.6e-81 306.2 176 84.1
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 3.6e-81 305.1 176 85.8
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 4.7e-81 304.7 180 84.4
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 4.7e-81 304.7 180 84.4
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 8.0e-81 303.9 176 85.8
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 1.4e-80 303.1 176 84.7
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 1.4e-80 303.1 178 83.7
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 1.4e-80 303.1 177 84.7
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.3e-80 302.4 176 83.0
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 4.0e-80 301.6 199 77.9
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 4.0e-80 301.6 164 89.6
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 4.0e-80 301.6 180 81.7
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 4.0e-80 301.6 176 84.1
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 4.0e-80 301.6 176 84.1
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 4.0e-80 301.6 177 84.7
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 5.2e-80 301.2 176 84.1
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 5.2e-80 301.2 176 84.7
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 5.2e-80 301.2 180 83.3
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 8.8e-80 300.4 176 84.7
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 8.8e-80 300.4 176 84.7
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 1.5e-79 299.7 182 81.9
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 1.5e-79 299.7 180 83.9
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 2.6e-79 298.9 168 86.3
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 3.3e-79 298.5 177 83.6
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 3.3e-79 298.5 180 81.7
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 4.4e-79 298.1 177 85.9
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 1.3e-78 296.6 177 82.5
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.7e-78 296.2 169 87.6
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 4.8e-78 294.7 169 85.2
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 6.3e-78 294.3 164 88.4
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 8.2e-78 293.9 176 81.8
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 1.4e-77 293.1 175 82.3
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 1.4e-77 293.1 176 82.4
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 1.8e-77 292.7 177 79.7
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.8e-77 292.7 177 83.1
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 2.4e-77 292.4 179 80.4
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 2.4e-77 292.4 175 79.4
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 4.1e-77 291.6 169 85.2
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 7.0e-77 290.8 175 81.1
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.6e-76 289.7 175 78.9
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 4.5e-76 288.1 169 85.2
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 7.7e-76 287.3 176 80.1
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 7.7e-76 287.3 178 79.2
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 2.2e-75 285.8 176 78.4
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 2.9e-75 285.4 184 78.3
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 3.8e-75 285.0 180 78.9
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 3.8e-75 285.0 161 85.1
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 3.8e-75 285.0 183 78.1
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 6.5e-75 284.3 180 79.4
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 6.5e-75 284.3 174 79.3
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 1.5e-74 283.1 161 83.9
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.5e-74 283.1 176 77.8
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 1.9e-74 282.7 180 78.9
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 5.5e-74 281.2 179 78.2
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 9.4e-74 280.4 160 85.6
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 9.4e-74 280.4 175 75.4
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 9.4e-74 280.4 159 84.3
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 1.2e-73 280.0 161 82.6
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 2.7e-73 278.9 173 80.3
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 4.7e-73 278.1 179 77.7
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 4.7e-73 278.1 180 77.2
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 6.1e-73 277.7 175 79.4
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 1.4e-72 276.6 185 75.1
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 1.4e-72 276.6 168 81.0
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 1.8e-72 276.2 180 76.1
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 2.3e-72 275.8 164 83.5
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 1.2e-71 273.5 160 81.9
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 2.0e-71 272.7 174 78.2
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.0e-71 272.7 159 82.4
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 2.0e-71 272.7 158 82.9
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 2.0e-71 272.7 160 83.1
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 2.0e-71 272.7 162 81.5
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 2.6e-71 272.3 175 78.3
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 4.4e-71 271.6 166 77.7
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 5.7e-71 271.2 159 81.8
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 7.5e-71 270.8 159 81.8
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 7.5e-71 270.8 160 82.5
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 9.8e-71 270.4 174 77.6
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 9.8e-71 270.4 158 82.3
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 9.8e-71 270.4 172 77.3
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 1.7e-70 269.6 190 72.6
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.8e-70 268.9 145 91.0
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 6.3e-70 267.7 181 75.7
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 1.1e-69 266.9 159 81.8
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 1.4e-69 266.5 145 90.3
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 2.4e-69 265.8 159 80.5
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.4e-69 265.8 159 80.5
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 3.1e-69 265.4 175 76.0
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 5.4e-69 264.6 168 78.6
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 5.4e-69 264.6 180 73.3
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 9.1e-69 263.8 159 79.2
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 2.7e-68 262.3 168 78.0
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 1.7e-67 259.6 175 74.3
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 5.0e-67 258.1 144 87.5
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.5e-66 256.5 181 70.7
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 1.9e-66 256.1 144 86.8
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 2.5e-66 255.8 171 74.9
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 2.5e-66 255.8 145 84.1
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 4.2e-66 255.0 148 85.8
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 5.5e-66 254.6 142 86.6
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 2.8e-65 252.3 172 73.3
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 2.8e-65 252.3 137 90.5
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 3.6e-65 251.9 172 74.4
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 1.4e-64 250.0 158 78.5
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.8e-64 249.6 176 73.3
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.6e-63 245.7 137 89.8
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 5.7e-63 244.6 138 84.1
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 5.7e-63 244.6 176 68.2
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.2e-60 236.9 159 74.8
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 3.3e-58 228.8 154 71.4
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 8.0e-57 224.2 135 77.8
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 2.6e-55 219.2 166 61.4
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 1.1e-53 213.8 135 79.3
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 5.4e-53 211.5 155 71.0
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.9e-50 203.0 109 92.7
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 2.8e-49 199.1 175 53.1
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 4.7e-49 198.4 117 86.3
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 1.5e-47 193.4 143 69.2
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 1.7e-46 189.9 110 81.8
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 1.7e-46 189.9 117 76.9
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 3.0e-43 179.1 126 73.8
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 1.6e-41 173.3 113 76.1
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 5.8e-39 164.9 111 73.0
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 9.9e-39 164.1 150 53.3
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 1.6e-36 156.8 100 76.0
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 7.8e-36 154.5 126 62.7
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.3e-34 149.1 77 89.6
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 4.0e-32 142.1 119 62.2
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.8e-32 141.4 119 62.2
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 2.6e-31 139.4 185 47.6
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.4e-29 133.7 77 79.2
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.1e-29 132.1 68 89.7
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 5.4e-29 131.7 93 68.8
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 7.1e-29 131.3 77 81.8
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.1e-28 129.8 154 49.4
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 2.7e-28 129.4 82 78.0
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 3.6e-25 119.0 120 59.2
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 2.6e-23 112.8 64 87.5
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.3e-19 99.8 77 64.9
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 1.9e-18 96.7 52 86.5
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 6.2e-17 91.7 66 66.7
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 2.2e-14 83.2 58 65.5
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 3.8e-14 82.4 58 69.0
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 2.2e-06 56.6 33 78.8


User provided reference genes

Program Settings